Wall clock time and date at job start Tue Mar 31 2020 21:14:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08991 * 109.47940 * 2 1 4 4 C 1.53004 * 109.46947 * 239.99740 * 2 1 3 5 5 N 1.46505 * 109.47180 * 185.00451 * 4 2 1 6 6 C 1.34768 * 120.00160 * 180.02562 * 5 4 2 7 7 O 1.21278 * 120.00210 * 0.02562 * 6 5 4 8 8 C 1.50702 * 119.99997 * 180.02562 * 6 5 4 9 9 C 1.52999 * 109.47207 * 179.97438 * 8 6 5 10 10 C 1.52996 * 109.47238 * 179.97438 * 9 8 6 11 11 O 1.42901 * 109.47194 * 180.02562 * 10 9 8 12 12 C 1.35905 * 117.00051 * 180.02562 * 11 10 9 13 13 C 1.38762 * 120.04343 * 359.72159 * 12 11 10 14 14 C 1.38133 * 119.99678 * 179.74902 * 13 12 11 15 15 C 1.38249 * 120.07521 * 0.52497 * 14 13 12 16 16 C 1.38470 * 120.08754 * 359.75009 * 15 14 13 17 17 F 1.35099 * 119.99850 * 179.97438 * 16 15 14 18 18 C 1.38381 * 120.00674 * 359.97427 * 16 15 14 19 19 N 1.46501 * 109.46899 * 120.00419 * 2 1 3 20 20 C 1.46499 * 120.00267 * 59.99534 * 19 2 1 21 21 C 1.36941 * 119.99915 * 239.99760 * 19 2 1 22 22 H 1.07996 * 119.99728 * 23.11953 * 21 19 2 23 23 C 1.38816 * 120.00061 * 203.11752 * 21 19 2 24 24 N 1.31624 * 119.99926 * 11.68617 * 23 21 19 25 25 Si 1.86790 * 119.99946 * 191.68584 * 23 21 19 26 26 H 1.48505 * 109.47027 * 90.00058 * 25 23 21 27 27 H 1.48506 * 109.47349 * 209.99961 * 25 23 21 28 28 H 1.48502 * 109.47531 * 330.00062 * 25 23 21 29 29 H 1.09001 * 109.46546 * 59.99718 * 1 2 3 30 30 H 1.09000 * 109.47495 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47112 * 300.00537 * 1 2 3 32 32 H 1.08994 * 109.47141 * 65.01076 * 4 2 1 33 33 H 1.08993 * 109.47253 * 305.00388 * 4 2 1 34 34 H 0.97000 * 119.99365 * 0.02562 * 5 4 2 35 35 H 1.08992 * 109.47561 * 59.99518 * 8 6 5 36 36 H 1.09003 * 109.46816 * 299.99691 * 8 6 5 37 37 H 1.09003 * 109.46877 * 59.99735 * 9 8 6 38 38 H 1.09000 * 109.47303 * 300.00118 * 9 8 6 39 39 H 1.09002 * 109.47273 * 59.99740 * 10 9 8 40 40 H 1.09004 * 109.47572 * 299.99718 * 10 9 8 41 41 H 1.08003 * 120.00224 * 359.97438 * 13 12 11 42 42 H 1.08002 * 119.96162 * 180.27876 * 14 13 12 43 43 H 1.08009 * 119.95292 * 179.76746 * 15 14 13 44 44 H 1.07999 * 120.04582 * 180.02562 * 18 16 15 45 45 H 1.08995 * 109.47282 * 93.93930 * 20 19 2 46 46 H 1.09003 * 109.47216 * 213.94224 * 20 19 2 47 47 H 1.09003 * 109.47096 * 333.93691 * 20 19 2 48 48 H 0.96996 * 119.99963 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 3.5000 -0.8266 -1.1906 6 6 4.1730 -1.4285 -2.1911 7 8 3.5700 -1.8827 -3.1403 8 6 5.6749 -1.5373 -2.1304 9 6 6.1849 -2.2585 -3.3797 10 6 7.7097 -2.3683 -3.3184 11 8 8.1861 -3.0414 -4.4855 12 6 9.5290 -3.2230 -4.5880 13 6 10.3713 -2.7576 -3.5884 14 6 11.7357 -2.9474 -3.6911 15 6 12.2646 -3.5911 -4.7943 16 6 11.4276 -4.0519 -5.7966 17 9 11.9463 -4.6803 -6.8742 18 6 10.0597 -3.8687 -5.6946 19 7 2.0183 -0.6907 1.1961 20 6 1.6643 -2.0933 1.4280 21 6 2.8056 -0.0253 2.0976 22 1 2.7706 1.0527 2.1526 23 6 3.6485 -0.7363 2.9407 24 7 3.8671 -2.0165 2.7261 25 14 4.4727 0.1235 4.3796 26 1 3.6012 0.0283 5.5782 27 1 5.7774 -0.5265 4.6634 28 1 4.6948 1.5523 4.0413 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.7518 -0.1584 -2.1369 33 1 1.6053 -1.7198 -1.2952 34 1 3.9823 -0.4630 -0.4315 35 1 5.9629 -2.1008 -1.2430 36 1 6.1098 -0.5389 -2.0838 37 1 5.8969 -1.6952 -4.2674 38 1 5.7499 -3.2568 -3.4259 39 1 7.9980 -2.9313 -2.4307 40 1 8.1444 -1.3698 -3.2725 41 1 9.9599 -2.2503 -2.7283 42 1 12.3904 -2.5888 -2.9105 43 1 13.3320 -3.7351 -4.8744 44 1 9.4063 -4.2282 -6.4757 45 1 2.4505 -2.7365 1.0330 46 1 1.5550 -2.2683 2.4983 47 1 0.7237 -2.3185 0.9252 48 1 4.4563 -2.5132 3.3150 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717498052.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:57 Heat of formation + Delta-G solvation = -84.800984 kcal Electronic energy + Delta-G solvation = -28390.616162 eV Core-core repulsion = 24167.827830 eV Total energy + Delta-G solvation = -4222.788332 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.22223 -40.39264 -39.25435 -37.63832 -36.76675 -33.88126 -33.61273 -32.06087 -31.16149 -30.08164 -29.38654 -27.69097 -26.08482 -25.34992 -23.44564 -23.12639 -22.71163 -21.43403 -19.79040 -19.29281 -18.75065 -17.04244 -16.96916 -16.63027 -16.61209 -16.31439 -16.14953 -15.87580 -15.46888 -15.29793 -14.94920 -14.61781 -14.16042 -14.08073 -13.53577 -13.46654 -12.98901 -12.89977 -12.66541 -12.52379 -12.30592 -12.27894 -12.08685 -12.01852 -11.68803 -11.64465 -11.34496 -11.11981 -11.09608 -10.87351 -10.74836 -10.71089 -10.45539 -10.34184 -9.92948 -9.84105 -9.40040 -9.22646 -8.66306 -8.61597 -8.38211 -6.87434 -5.82856 -3.31073 0.78968 0.96039 2.72249 3.12814 3.25739 3.28903 3.36359 3.37457 3.80898 4.05137 4.38035 4.39470 4.63756 4.68147 4.76833 4.78924 4.94995 4.98523 5.05338 5.28048 5.30118 5.33075 5.36055 5.47108 5.58051 5.61202 5.71457 5.74382 5.88095 5.93149 5.98894 6.04151 6.06090 6.12895 6.20336 6.33240 6.36501 6.40067 6.65959 6.77159 6.86803 7.07211 7.12309 7.34324 7.66685 7.72684 8.19005 8.28652 8.79081 9.12839 9.75808 10.25892 11.20045 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.013694 B = 0.002058 C = 0.001839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.131911 B =13602.517187 C =15219.586139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.158 3.842 3 H 0.068 0.932 4 C 0.108 3.892 5 N -0.700 5.700 6 C 0.511 3.489 7 O -0.564 6.564 8 C -0.138 4.138 9 C -0.100 4.100 10 C 0.058 3.942 11 O -0.308 6.308 12 C 0.166 3.834 13 C -0.220 4.220 14 C -0.050 4.050 15 C -0.197 4.197 16 C 0.137 3.863 17 F -0.136 7.136 18 C -0.194 4.194 19 N -0.594 5.594 20 C 0.164 3.836 21 C -0.260 4.260 22 H 0.067 0.933 23 C 0.005 3.995 24 N -0.902 5.902 25 Si 0.902 3.098 26 H -0.289 1.289 27 H -0.292 1.292 28 H -0.280 1.280 29 H 0.045 0.955 30 H 0.051 0.949 31 H 0.056 0.944 32 H 0.052 0.948 33 H 0.057 0.943 34 H 0.415 0.585 35 H 0.099 0.901 36 H 0.092 0.908 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.068 0.932 40 H 0.066 0.934 41 H 0.137 0.863 42 H 0.136 0.864 43 H 0.135 0.865 44 H 0.143 0.857 45 H 0.028 0.972 46 H 0.041 0.959 47 H -0.002 1.002 48 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.922 -0.008 -11.937 16.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.049 3.951 3 H 0.086 0.914 4 C -0.019 4.019 5 N -0.350 5.350 6 C 0.297 3.703 7 O -0.444 6.444 8 C -0.178 4.178 9 C -0.138 4.138 10 C -0.017 4.017 11 O -0.221 6.221 12 C 0.119 3.881 13 C -0.239 4.239 14 C -0.068 4.068 15 C -0.216 4.216 16 C 0.118 3.882 17 F -0.114 7.114 18 C -0.213 4.213 19 N -0.317 5.317 20 C 0.019 3.981 21 C -0.389 4.389 22 H 0.085 0.915 23 C -0.194 4.194 24 N -0.547 5.547 25 Si 0.733 3.267 26 H -0.216 1.216 27 H -0.218 1.218 28 H -0.206 1.206 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.252 0.748 35 H 0.118 0.882 36 H 0.110 0.890 37 H 0.099 0.901 38 H 0.101 0.899 39 H 0.087 0.913 40 H 0.085 0.915 41 H 0.155 0.845 42 H 0.154 0.846 43 H 0.153 0.847 44 H 0.161 0.839 45 H 0.047 0.953 46 H 0.060 0.940 47 H 0.016 0.984 48 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 11.437 -0.520 -12.639 17.053 hybrid contribution 0.883 0.438 1.357 1.677 sum 12.320 -0.082 -11.282 16.706 Atomic orbital electron populations 1.22173 0.97538 1.01457 1.00637 1.20651 0.92586 0.95863 0.86007 0.91382 1.21918 0.80212 1.00913 0.98814 1.45853 1.08139 1.58010 1.23028 1.20340 0.89532 0.77940 0.82530 1.90650 1.70560 1.49026 1.34163 1.21482 0.93673 1.02848 0.99773 1.21207 0.90955 1.03104 0.98548 1.22996 0.96044 0.96469 0.86189 1.86092 1.18457 1.73675 1.43830 1.18651 0.83151 0.93138 0.93162 1.21421 0.94417 1.07160 1.00902 1.20811 0.94477 0.94979 0.96498 1.21042 1.00428 1.04877 0.95258 1.17284 0.91058 0.95226 0.84661 1.91514 1.87053 1.79737 1.53128 1.20276 0.93714 1.06985 1.00326 1.43940 1.57870 1.09662 1.20228 1.20747 0.93924 0.84490 0.98930 1.19224 1.15959 0.91137 1.12611 0.91483 1.25016 0.97927 0.96144 1.00296 1.70080 1.39003 1.07345 1.38229 0.86301 0.78646 0.78742 0.83054 1.21584 1.21812 1.20560 0.93572 0.92955 0.92456 0.92970 0.92490 0.74830 0.88248 0.88959 0.90124 0.89946 0.91340 0.91545 0.84480 0.84606 0.84678 0.83880 0.95320 0.93978 0.98356 0.93731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.55 9.18 37.16 0.34 -2.21 16 2 C 0.16 2.91 2.87 -67.93 -0.19 2.71 16 3 H 0.07 1.24 7.86 -51.93 -0.41 0.83 16 4 C 0.11 1.94 4.97 -4.04 -0.02 1.92 16 5 N -0.70 -12.61 5.39 -60.30 -0.32 -12.94 16 6 C 0.51 8.85 7.83 -10.99 -0.09 8.76 16 7 O -0.56 -11.44 15.98 5.56 0.09 -11.35 16 8 C -0.14 -1.78 5.70 -27.88 -0.16 -1.94 16 9 C -0.10 -1.23 4.87 -26.73 -0.13 -1.36 16 10 C 0.06 0.58 4.74 37.16 0.18 0.76 16 11 O -0.31 -3.63 10.14 -19.44 -0.20 -3.83 16 12 C 0.17 1.79 6.68 -39.23 -0.26 1.52 16 13 C -0.22 -1.99 9.04 -39.43 -0.36 -2.35 16 14 C -0.05 -0.39 10.04 -39.62 -0.40 -0.78 16 15 C -0.20 -1.65 10.02 -39.49 -0.40 -2.05 16 16 C 0.14 1.37 7.30 -39.44 -0.29 1.08 16 17 F -0.14 -1.42 17.27 2.25 0.04 -1.38 16 18 C -0.19 -2.03 9.97 -39.37 -0.39 -2.43 16 19 N -0.59 -13.24 2.29 -173.48 -0.40 -13.64 16 20 C 0.16 3.79 8.11 59.85 0.49 4.27 16 21 C -0.26 -6.35 9.32 -15.06 -0.14 -6.49 16 22 H 0.07 1.62 7.82 -52.49 -0.41 1.21 16 23 C 0.01 0.13 5.12 -17.43 -0.09 0.04 16 24 N -0.90 -23.87 10.65 55.49 0.59 -23.27 16 25 Si 0.90 20.17 29.57 -169.99 -5.03 15.15 16 26 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 27 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 28 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.05 0.86 6.66 -51.93 -0.35 0.51 16 31 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.06 1.12 7.84 -51.93 -0.41 0.71 16 34 H 0.41 7.80 7.89 -40.82 -0.32 7.48 16 35 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 36 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.08 1.04 8.10 -51.93 -0.42 0.62 16 38 H 0.08 1.13 8.10 -51.93 -0.42 0.71 16 39 H 0.07 0.63 7.67 -51.93 -0.40 0.23 16 40 H 0.07 0.56 7.65 -51.93 -0.40 0.16 16 41 H 0.14 1.03 6.30 -52.48 -0.33 0.70 16 42 H 0.14 0.71 8.06 -52.49 -0.42 0.29 16 43 H 0.14 0.87 8.06 -52.48 -0.42 0.44 16 44 H 0.14 1.39 8.06 -52.49 -0.42 0.97 16 45 H 0.03 0.72 7.41 -51.93 -0.38 0.34 16 46 H 0.04 1.06 7.23 -51.93 -0.38 0.69 16 47 H 0.00 -0.04 6.43 -51.93 -0.33 -0.38 16 48 H 0.25 6.60 8.31 -40.82 -0.34 6.26 16 LS Contribution 398.51 15.07 6.01 6.01 Total: -1.00 -28.97 398.51 -8.60 -37.57 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: -7.47 Total: 6.21 kcal Atomic # 6 Polarization: 3.39 SS G_CDS: -1.91 Total: 1.48 kcal Atomic # 7 Polarization: -49.72 SS G_CDS: -0.13 Total: -49.85 kcal Atomic # 8 Polarization: -15.07 SS G_CDS: -0.11 Total: -15.18 kcal Atomic # 9 Polarization: -1.42 SS G_CDS: 0.04 Total: -1.38 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.03 Total: 15.15 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -28.97 -8.60 -37.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717498052.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.232 kcal (2) G-P(sol) polarization free energy of solvation -28.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds