Wall clock time and date at job start Tue Mar 31 2020 21:14:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08991 * 109.47940 * 2 1 4 4 C 1.53004 * 109.46947 * 239.99740 * 2 1 3 5 5 N 1.46505 * 109.47180 * 185.00451 * 4 2 1 6 6 C 1.34768 * 120.00160 * 180.02562 * 5 4 2 7 7 O 1.21278 * 120.00210 * 0.02562 * 6 5 4 8 8 C 1.50702 * 119.99997 * 180.02562 * 6 5 4 9 9 C 1.52999 * 109.47207 * 179.97438 * 8 6 5 10 10 C 1.52996 * 109.47238 * 179.97438 * 9 8 6 11 11 O 1.42901 * 109.47194 * 180.02562 * 10 9 8 12 12 C 1.35905 * 117.00051 * 180.02562 * 11 10 9 13 13 C 1.38762 * 120.04343 * 359.72159 * 12 11 10 14 14 C 1.38133 * 119.99678 * 179.74902 * 13 12 11 15 15 C 1.38249 * 120.07521 * 0.52497 * 14 13 12 16 16 C 1.38470 * 120.08754 * 359.75009 * 15 14 13 17 17 F 1.35099 * 119.99850 * 179.97438 * 16 15 14 18 18 C 1.38381 * 120.00674 * 359.97427 * 16 15 14 19 19 N 1.46501 * 109.46899 * 120.00419 * 2 1 3 20 20 C 1.46499 * 120.00267 * 59.99534 * 19 2 1 21 21 C 1.36941 * 119.99915 * 239.99760 * 19 2 1 22 22 H 1.07996 * 119.99728 * 23.11953 * 21 19 2 23 23 C 1.38816 * 120.00061 * 203.11752 * 21 19 2 24 24 N 1.31624 * 119.99926 * 11.68617 * 23 21 19 25 25 Si 1.86790 * 119.99946 * 191.68584 * 23 21 19 26 26 H 1.48505 * 109.47027 * 90.00058 * 25 23 21 27 27 H 1.48506 * 109.47349 * 209.99961 * 25 23 21 28 28 H 1.48502 * 109.47531 * 330.00062 * 25 23 21 29 29 H 1.09001 * 109.46546 * 59.99718 * 1 2 3 30 30 H 1.09000 * 109.47495 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47112 * 300.00537 * 1 2 3 32 32 H 1.08994 * 109.47141 * 65.01076 * 4 2 1 33 33 H 1.08993 * 109.47253 * 305.00388 * 4 2 1 34 34 H 0.97000 * 119.99365 * 0.02562 * 5 4 2 35 35 H 1.08992 * 109.47561 * 59.99518 * 8 6 5 36 36 H 1.09003 * 109.46816 * 299.99691 * 8 6 5 37 37 H 1.09003 * 109.46877 * 59.99735 * 9 8 6 38 38 H 1.09000 * 109.47303 * 300.00118 * 9 8 6 39 39 H 1.09002 * 109.47273 * 59.99740 * 10 9 8 40 40 H 1.09004 * 109.47572 * 299.99718 * 10 9 8 41 41 H 1.08003 * 120.00224 * 359.97438 * 13 12 11 42 42 H 1.08002 * 119.96162 * 180.27876 * 14 13 12 43 43 H 1.08009 * 119.95292 * 179.76746 * 15 14 13 44 44 H 1.07999 * 120.04582 * 180.02562 * 18 16 15 45 45 H 1.08995 * 109.47282 * 93.93930 * 20 19 2 46 46 H 1.09003 * 109.47216 * 213.94224 * 20 19 2 47 47 H 1.09003 * 109.47096 * 333.93691 * 20 19 2 48 48 H 0.96996 * 119.99963 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 3.5000 -0.8266 -1.1906 6 6 4.1730 -1.4285 -2.1911 7 8 3.5700 -1.8827 -3.1403 8 6 5.6749 -1.5373 -2.1304 9 6 6.1849 -2.2585 -3.3797 10 6 7.7097 -2.3683 -3.3184 11 8 8.1861 -3.0414 -4.4855 12 6 9.5290 -3.2230 -4.5880 13 6 10.3713 -2.7576 -3.5884 14 6 11.7357 -2.9474 -3.6911 15 6 12.2646 -3.5911 -4.7943 16 6 11.4276 -4.0519 -5.7966 17 9 11.9463 -4.6803 -6.8742 18 6 10.0597 -3.8687 -5.6946 19 7 2.0183 -0.6907 1.1961 20 6 1.6643 -2.0933 1.4280 21 6 2.8056 -0.0253 2.0976 22 1 2.7706 1.0527 2.1526 23 6 3.6485 -0.7363 2.9407 24 7 3.8671 -2.0165 2.7261 25 14 4.4727 0.1235 4.3796 26 1 3.6012 0.0283 5.5782 27 1 5.7774 -0.5265 4.6634 28 1 4.6948 1.5523 4.0413 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.7518 -0.1584 -2.1369 33 1 1.6053 -1.7198 -1.2952 34 1 3.9823 -0.4630 -0.4315 35 1 5.9629 -2.1008 -1.2430 36 1 6.1098 -0.5389 -2.0838 37 1 5.8969 -1.6952 -4.2674 38 1 5.7499 -3.2568 -3.4259 39 1 7.9980 -2.9313 -2.4307 40 1 8.1444 -1.3698 -3.2725 41 1 9.9599 -2.2503 -2.7283 42 1 12.3904 -2.5888 -2.9105 43 1 13.3320 -3.7351 -4.8744 44 1 9.4063 -4.2282 -6.4757 45 1 2.4505 -2.7365 1.0330 46 1 1.5550 -2.2683 2.4983 47 1 0.7237 -2.3185 0.9252 48 1 4.4563 -2.5132 3.3150 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717498052.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:56 Heat of formation + Delta-G solvation = -100.215658 kcal Electronic energy + Delta-G solvation = -28391.284592 eV Core-core repulsion = 24167.827830 eV Total energy + Delta-G solvation = -4223.456762 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -49.98973 -41.17171 -40.63581 -38.50505 -38.27013 -35.34384 -34.82081 -33.69831 -31.88754 -31.12160 -30.76583 -28.74926 -27.97675 -26.59256 -24.89609 -24.13564 -23.60549 -22.32008 -21.19754 -20.76373 -19.57688 -18.80511 -18.04893 -17.50165 -17.49140 -17.15256 -17.08955 -17.01535 -16.73359 -16.64459 -16.28091 -15.77668 -15.48178 -14.84426 -14.83884 -14.72507 -14.48715 -14.29790 -13.82216 -13.72993 -13.59254 -13.27355 -13.23254 -13.04563 -12.99383 -12.79152 -12.59246 -12.49386 -12.43496 -12.27641 -12.23352 -12.05282 -11.89279 -11.71595 -11.59229 -11.45540 -10.83424 -10.57493 -9.93750 -9.86047 -9.33870 -8.73490 -7.73894 -5.23341 0.08664 0.26450 1.51597 1.56038 1.61597 1.75011 1.90643 2.52820 2.56715 2.58133 3.32481 3.39642 3.65940 3.70195 3.81136 3.90861 3.97308 4.00243 4.09846 4.11342 4.17188 4.36971 4.39642 4.42426 4.44070 4.49968 4.64013 4.66905 4.74812 4.86087 4.89236 4.98275 5.04896 5.06929 5.10390 5.17607 5.23172 5.29619 5.32695 5.33042 5.50597 5.67270 5.70913 5.74621 5.77669 6.32195 6.39405 6.75409 7.21849 7.38035 7.92704 8.39228 9.27486 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.013694 B = 0.002058 C = 0.001839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.131911 B =13602.517187 C =15219.586139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.157 3.843 3 H 0.075 0.925 4 C 0.114 3.886 5 N -0.703 5.703 6 C 0.504 3.496 7 O -0.598 6.598 8 C -0.128 4.128 9 C -0.093 4.093 10 C 0.061 3.939 11 O -0.329 6.329 12 C 0.146 3.854 13 C -0.221 4.221 14 C -0.045 4.045 15 C -0.193 4.193 16 C 0.121 3.879 17 F -0.143 7.143 18 C -0.210 4.210 19 N -0.601 5.601 20 C 0.182 3.818 21 C -0.257 4.257 22 H 0.073 0.927 23 C -0.041 4.041 24 N -0.929 5.929 25 Si 0.959 3.041 26 H -0.299 1.299 27 H -0.298 1.298 28 H -0.268 1.268 29 H 0.075 0.925 30 H 0.046 0.954 31 H 0.053 0.947 32 H 0.067 0.933 33 H 0.037 0.963 34 H 0.412 0.588 35 H 0.104 0.896 36 H 0.123 0.877 37 H 0.070 0.930 38 H 0.059 0.941 39 H 0.080 0.920 40 H 0.090 0.910 41 H 0.155 0.845 42 H 0.169 0.831 43 H 0.157 0.843 44 H 0.138 0.862 45 H 0.001 0.999 46 H 0.013 0.987 47 H 0.019 0.981 48 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.176 1.791 -11.490 17.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.050 3.950 3 H 0.093 0.907 4 C -0.013 4.013 5 N -0.353 5.353 6 C 0.292 3.708 7 O -0.480 6.480 8 C -0.167 4.167 9 C -0.131 4.131 10 C -0.013 4.013 11 O -0.243 6.243 12 C 0.100 3.900 13 C -0.239 4.239 14 C -0.063 4.063 15 C -0.212 4.212 16 C 0.102 3.898 17 F -0.122 7.122 18 C -0.230 4.230 19 N -0.325 5.325 20 C 0.037 3.963 21 C -0.387 4.387 22 H 0.091 0.909 23 C -0.237 4.237 24 N -0.575 5.575 25 Si 0.789 3.211 26 H -0.226 1.226 27 H -0.225 1.225 28 H -0.192 1.192 29 H 0.094 0.906 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.085 0.915 33 H 0.055 0.945 34 H 0.248 0.752 35 H 0.122 0.878 36 H 0.141 0.859 37 H 0.089 0.911 38 H 0.077 0.923 39 H 0.098 0.902 40 H 0.108 0.892 41 H 0.172 0.828 42 H 0.186 0.814 43 H 0.175 0.825 44 H 0.156 0.844 45 H 0.020 0.980 46 H 0.032 0.968 47 H 0.038 0.962 48 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 12.681 1.311 -12.209 17.652 hybrid contribution 0.449 -0.106 1.170 1.258 sum 13.130 1.205 -11.039 17.196 Atomic orbital electron populations 1.22073 0.95383 1.01530 1.01975 1.20830 0.94071 0.95631 0.84503 0.90671 1.21819 0.80440 0.99880 0.99132 1.45940 1.08160 1.58139 1.23059 1.21090 0.91321 0.76769 0.81592 1.90631 1.71711 1.50290 1.35382 1.21464 0.90401 1.04768 1.00085 1.21075 0.92737 1.01477 0.97838 1.22978 0.94273 0.97877 0.86179 1.86041 1.19363 1.74303 1.44594 1.18820 0.82941 0.94255 0.93997 1.21695 0.94868 1.06631 1.00740 1.21208 0.94388 0.93890 0.96811 1.21369 1.01388 1.03808 0.94654 1.17489 0.91155 0.96009 0.85167 1.91491 1.87063 1.80007 1.53607 1.20374 0.94222 1.07704 1.00665 1.44057 1.57725 1.09257 1.21420 1.20405 0.93945 0.84919 0.97014 1.19490 1.15219 0.91452 1.12565 0.90930 1.25610 0.99019 0.96663 1.02418 1.70231 1.39901 1.08490 1.38896 0.85391 0.77136 0.78420 0.80110 1.22648 1.22474 1.19221 0.90581 0.93501 0.92769 0.91467 0.94459 0.75172 0.87801 0.85862 0.91111 0.92261 0.90206 0.89215 0.82775 0.81397 0.82536 0.84392 0.98036 0.96772 0.96244 0.94526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.51 9.18 71.98 0.66 -3.85 16 2 C 0.16 5.54 2.87 44.99 0.13 5.67 16 3 H 0.08 2.57 7.86 -2.39 -0.02 2.55 16 4 C 0.11 3.99 4.97 86.38 0.43 4.42 16 5 N -0.70 -24.89 5.39 -463.07 -2.49 -27.38 16 6 C 0.50 17.29 7.83 87.66 0.69 17.98 16 7 O -0.60 -24.46 15.98 -3.02 -0.05 -24.51 16 8 C -0.13 -3.14 5.70 29.85 0.17 -2.97 16 9 C -0.09 -2.24 4.87 30.59 0.15 -2.09 16 10 C 0.06 1.15 4.74 71.98 0.34 1.49 16 11 O -0.33 -7.69 10.14 -92.48 -0.94 -8.63 16 12 C 0.15 3.06 6.68 22.50 0.15 3.21 16 13 C -0.22 -3.50 9.04 22.37 0.20 -3.30 16 14 C -0.05 -0.57 10.04 22.25 0.22 -0.35 16 15 C -0.19 -2.85 10.02 22.33 0.22 -2.63 16 16 C 0.12 2.36 7.30 22.36 0.16 2.52 16 17 F -0.14 -2.98 17.27 44.97 0.78 -2.21 16 18 C -0.21 -4.48 9.97 22.41 0.22 -4.26 16 19 N -0.60 -26.39 2.29 -702.78 -1.61 -28.00 16 20 C 0.18 8.51 8.11 127.77 1.04 9.54 16 21 C -0.26 -12.31 9.32 84.03 0.78 -11.52 16 22 H 0.07 3.37 7.82 -2.91 -0.02 3.34 16 23 C -0.04 -2.05 5.12 84.86 0.43 -1.62 16 24 N -0.93 -49.61 10.65 21.65 0.23 -49.38 16 25 Si 0.96 41.06 29.57 68.60 2.03 43.09 16 26 H -0.30 -13.19 7.11 99.48 0.71 -12.48 16 27 H -0.30 -12.96 7.11 99.48 0.71 -12.25 16 28 H -0.27 -10.78 7.11 99.48 0.71 -10.08 16 29 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.05 1.45 6.66 -2.39 -0.02 1.43 16 31 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 33 H 0.04 1.46 7.84 -2.39 -0.02 1.44 16 34 H 0.41 15.14 7.89 -92.71 -0.73 14.41 16 35 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16 36 H 0.12 2.29 8.14 -2.39 -0.02 2.27 16 37 H 0.07 1.83 8.10 -2.39 -0.02 1.81 16 38 H 0.06 1.68 8.10 -2.39 -0.02 1.66 16 39 H 0.08 1.31 7.67 -2.39 -0.02 1.30 16 40 H 0.09 1.27 7.65 -2.38 -0.02 1.25 16 41 H 0.15 1.84 6.30 -2.91 -0.02 1.82 16 42 H 0.17 1.04 8.06 -2.91 -0.02 1.01 16 43 H 0.16 1.57 8.06 -2.91 -0.02 1.55 16 44 H 0.14 2.89 8.06 -2.91 -0.02 2.87 16 45 H 0.00 0.07 7.41 -2.39 -0.02 0.05 16 46 H 0.01 0.70 7.23 -2.39 -0.02 0.69 16 47 H 0.02 0.80 6.43 -2.39 -0.02 0.79 16 48 H 0.25 13.00 8.31 -92.71 -0.77 12.23 16 Total: -1.00 -63.19 398.51 4.19 -59.01 By element: Atomic # 1 Polarization: 25.54 SS G_CDS: 0.23 Total: 25.77 kcal Atomic # 6 Polarization: 6.24 SS G_CDS: 6.01 Total: 12.24 kcal Atomic # 7 Polarization: -100.89 SS G_CDS: -3.87 Total: -104.76 kcal Atomic # 8 Polarization: -32.15 SS G_CDS: -0.99 Total: -33.14 kcal Atomic # 9 Polarization: -2.98 SS G_CDS: 0.78 Total: -2.21 kcal Atomic # 14 Polarization: 41.06 SS G_CDS: 2.03 Total: 43.09 kcal Total: -63.19 4.19 -59.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717498052.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.209 kcal (2) G-P(sol) polarization free energy of solvation -63.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds