Wall clock time and date at job start Tue Mar 31 2020 21:07:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.47034 * 2 1 4 4 C 1.53001 * 109.47165 * 120.00780 * 2 1 3 5 5 N 1.46499 * 109.47025 * 174.99700 * 4 2 1 6 6 C 1.46491 * 120.00034 * 269.99625 * 5 4 2 7 7 C 1.34779 * 119.99872 * 90.00054 * 5 4 2 8 8 O 1.21286 * 120.00040 * 359.97438 * 7 5 4 9 9 C 1.50698 * 120.00201 * 179.97438 * 7 5 4 10 10 C 1.52992 * 109.47592 * 179.97438 * 9 7 5 11 11 C 1.52997 * 109.47482 * 179.97438 * 10 9 7 12 12 O 1.42898 * 109.47319 * 180.02562 * 11 10 9 13 13 C 1.35897 * 117.00481 * 180.02562 * 12 11 10 14 14 C 1.38774 * 120.03441 * 359.72088 * 13 12 11 15 15 C 1.38138 * 119.99122 * 179.74971 * 14 13 12 16 16 C 1.38257 * 120.07872 * 0.53010 * 15 14 13 17 17 C 1.38476 * 120.08328 * 359.74048 * 16 15 14 18 18 F 1.35105 * 119.99874 * 179.97438 * 17 16 15 19 19 C 1.38392 * 120.00736 * 359.97438 * 17 16 15 20 20 N 1.46503 * 109.46688 * 240.00252 * 2 1 3 21 21 C 1.36939 * 119.99673 * 85.00382 * 20 2 1 22 22 H 1.08003 * 120.00140 * 359.97438 * 21 20 2 23 23 C 1.38819 * 119.99842 * 179.97438 * 21 20 2 24 24 N 1.31618 * 119.99798 * 180.02562 * 23 21 20 25 25 Si 1.86798 * 120.00065 * 0.02562 * 23 21 20 26 26 H 1.48507 * 109.47035 * 89.99391 * 25 23 21 27 27 H 1.48496 * 109.47305 * 209.99658 * 25 23 21 28 28 H 1.48501 * 109.47151 * 329.99933 * 25 23 21 29 29 H 1.09007 * 109.47441 * 59.99333 * 1 2 3 30 30 H 1.08997 * 109.47601 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47184 * 299.99665 * 1 2 3 32 32 H 1.09000 * 109.47156 * 54.99783 * 4 2 1 33 33 H 1.09002 * 109.46731 * 294.99946 * 4 2 1 34 34 H 1.08999 * 109.47474 * 270.00311 * 6 5 4 35 35 H 1.08996 * 109.47479 * 30.00370 * 6 5 4 36 36 H 1.09007 * 109.47434 * 150.00229 * 6 5 4 37 37 H 1.09002 * 109.47210 * 59.99599 * 9 7 5 38 38 H 1.09001 * 109.46665 * 299.99857 * 9 7 5 39 39 H 1.09002 * 109.47103 * 59.99616 * 10 9 7 40 40 H 1.08998 * 109.46862 * 300.00428 * 10 9 7 41 41 H 1.09002 * 109.47153 * 59.99783 * 11 10 9 42 42 H 1.09001 * 109.46832 * 299.99974 * 11 10 9 43 43 H 1.07996 * 120.00577 * 0.02562 * 14 13 12 44 44 H 1.07993 * 119.96226 * 180.27412 * 15 14 13 45 45 H 1.07999 * 119.95967 * 179.77480 * 16 15 14 46 46 H 1.07997 * 120.03638 * 180.02562 * 19 17 16 47 47 H 0.96996 * 120.00419 * 264.99741 * 20 2 1 48 48 H 0.97004 * 119.99903 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 1.2491 5 7 3.5000 -0.8266 1.1904 6 6 4.1257 -1.9921 0.5610 7 6 4.2676 0.1489 1.7155 8 8 3.7495 1.1141 2.2363 9 6 5.7694 0.0405 1.6556 10 6 6.3963 1.2696 2.3168 11 6 7.9211 1.1592 2.2566 12 8 8.5066 2.3069 2.8747 13 6 9.8639 2.3662 2.9054 14 6 10.6167 1.3376 2.3568 15 6 11.9964 1.4013 2.3838 16 6 12.6288 2.4838 2.9668 17 6 11.8807 3.5093 3.5202 18 9 12.5005 4.5661 4.0898 19 6 10.4983 3.4519 3.4897 20 7 2.0182 -0.6906 -1.1963 21 6 2.1490 -0.0073 -2.3758 22 1 1.8918 1.0405 -2.4243 23 6 2.6121 -0.6615 -3.5092 24 7 2.7383 -0.0047 -4.6427 25 14 3.0562 -2.4740 -3.4255 26 1 1.8589 -3.2923 -3.7454 27 1 4.1319 -2.7659 -4.4067 28 1 3.5307 -2.8048 -2.0578 29 1 -0.3634 0.5140 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6053 -1.7200 1.2949 33 1 1.7516 -0.1585 2.1369 34 1 4.2821 -2.7690 1.3093 35 1 3.4756 -2.3722 -0.2270 36 1 5.0850 -1.7022 0.1322 37 1 6.0886 -0.0141 0.6148 38 1 6.0900 -0.8587 2.1817 39 1 6.0772 1.3247 3.3576 40 1 6.0756 2.1685 1.7905 41 1 8.2406 1.1038 1.2159 42 1 8.2414 0.2602 2.7833 43 1 10.1241 0.4895 1.9048 44 1 12.5817 0.6026 1.9528 45 1 13.7075 2.5298 2.9901 46 1 9.9145 4.2517 3.9208 47 1 2.2489 -1.6317 -1.1528 48 1 3.0616 -0.4619 -5.4348 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717754994.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:07:03 Heat of formation + Delta-G solvation = -79.669866 kcal Electronic energy + Delta-G solvation = -28597.870313 eV Core-core repulsion = 24375.304483 eV Total energy + Delta-G solvation = -4222.565830 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.25398 -40.46771 -39.77721 -37.71164 -36.61109 -34.40020 -33.95242 -32.09169 -31.21776 -30.15028 -29.61112 -27.91483 -26.92818 -25.35643 -23.58462 -23.28858 -22.77133 -21.55504 -20.24562 -19.22098 -18.67331 -17.69229 -17.16573 -16.73396 -16.71550 -16.43241 -16.32854 -15.96009 -15.81209 -15.47515 -14.88363 -14.61496 -14.30825 -14.12811 -13.79484 -13.55148 -13.23228 -13.02399 -12.81293 -12.65761 -12.40693 -12.39901 -12.33223 -12.29692 -11.94105 -11.76436 -11.58228 -11.51801 -11.43132 -11.17689 -10.97541 -10.82389 -10.70740 -10.60159 -10.10428 -9.65880 -9.54023 -9.27063 -9.00346 -8.66836 -8.33900 -7.29880 -5.80361 -3.15552 0.74304 0.91327 2.62808 2.84236 3.18298 3.20934 3.29602 3.30409 3.37013 3.98077 4.32169 4.51053 4.51546 4.58227 4.63679 4.65312 4.81798 4.82685 4.99752 5.06590 5.10915 5.16810 5.19739 5.29356 5.41004 5.46398 5.51538 5.56151 5.61120 5.68258 5.69729 5.82706 5.88959 5.93342 5.96834 6.03669 6.09127 6.14873 6.19049 6.34635 6.44748 6.66676 6.77924 7.01003 7.03566 7.59667 7.97206 8.37755 8.39439 9.16266 9.87942 10.08226 11.38347 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.014339 B = 0.002110 C = 0.001971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1952.228062 B =13269.471791 C =14200.477204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.160 3.840 3 H 0.060 0.940 4 C 0.107 3.893 5 N -0.599 5.599 6 C 0.074 3.926 7 C 0.517 3.483 8 O -0.545 6.545 9 C -0.137 4.137 10 C -0.103 4.103 11 C 0.059 3.941 12 O -0.307 6.307 13 C 0.165 3.835 14 C -0.221 4.221 15 C -0.050 4.050 16 C -0.196 4.196 17 C 0.138 3.862 18 F -0.135 7.135 19 C -0.193 4.193 20 N -0.745 5.745 21 C -0.235 4.235 22 H 0.089 0.911 23 C 0.001 3.999 24 N -0.935 5.935 25 Si 0.881 3.119 26 H -0.286 1.286 27 H -0.292 1.292 28 H -0.274 1.274 29 H 0.060 0.940 30 H 0.045 0.955 31 H 0.042 0.958 32 H 0.071 0.929 33 H 0.084 0.916 34 H 0.049 0.951 35 H 0.083 0.917 36 H 0.070 0.930 37 H 0.099 0.901 38 H 0.092 0.908 39 H 0.081 0.919 40 H 0.085 0.915 41 H 0.068 0.932 42 H 0.065 0.935 43 H 0.136 0.864 44 H 0.136 0.864 45 H 0.136 0.864 46 H 0.144 0.856 47 H 0.357 0.643 48 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.029 -2.579 17.460 23.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.050 3.950 3 H 0.078 0.922 4 C -0.016 4.016 5 N -0.331 5.331 6 C -0.069 4.069 7 C 0.305 3.695 8 O -0.422 6.422 9 C -0.177 4.177 10 C -0.141 4.141 11 C -0.016 4.016 12 O -0.220 6.220 13 C 0.119 3.881 14 C -0.239 4.239 15 C -0.068 4.068 16 C -0.215 4.215 17 C 0.119 3.881 18 F -0.114 7.114 19 C -0.212 4.212 20 N -0.389 5.389 21 C -0.365 4.365 22 H 0.106 0.894 23 C -0.194 4.194 24 N -0.583 5.583 25 Si 0.712 3.288 26 H -0.213 1.213 27 H -0.219 1.219 28 H -0.201 1.201 29 H 0.079 0.921 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.089 0.911 33 H 0.103 0.897 34 H 0.068 0.932 35 H 0.101 0.899 36 H 0.089 0.911 37 H 0.118 0.882 38 H 0.110 0.890 39 H 0.100 0.900 40 H 0.104 0.896 41 H 0.087 0.913 42 H 0.083 0.917 43 H 0.154 0.846 44 H 0.154 0.846 45 H 0.154 0.846 46 H 0.162 0.838 47 H 0.191 0.809 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 15.625 -1.729 17.642 23.630 hybrid contribution 0.488 -1.463 -0.400 1.594 sum 16.113 -3.193 17.242 23.814 Atomic orbital electron populations 1.22339 0.98274 1.00844 1.00863 1.20632 0.92163 0.96592 0.85660 0.92185 1.21885 0.78853 1.01119 0.99734 1.47604 1.06807 1.21393 1.57273 1.22039 0.99663 0.87496 0.97741 1.20344 0.89085 0.82176 0.77855 1.90685 1.75183 1.30984 1.45387 1.21537 0.93027 0.99561 1.03556 1.21231 0.90536 0.99026 1.03304 1.22959 0.94439 0.86632 0.97579 1.86093 1.16403 1.44429 1.75048 1.18640 0.82927 0.93193 0.93364 1.21397 0.95025 1.00551 1.06971 1.20805 0.93721 0.96821 0.95437 1.21050 1.00812 0.95179 1.04507 1.17294 0.89892 0.85071 0.95890 1.91520 1.82717 1.54782 1.82351 1.20285 0.92672 1.00658 1.07608 1.42814 1.79813 1.09110 1.07163 1.19083 1.36367 0.95599 0.85483 0.89350 1.24674 1.01821 0.97321 0.95597 1.69700 1.52950 1.35410 1.00253 0.86691 0.78162 0.87112 0.76808 1.21281 1.21875 1.20068 0.92077 0.93598 0.93935 0.91094 0.89732 0.93200 0.89898 0.91097 0.88229 0.88959 0.90015 0.89622 0.91337 0.91650 0.84575 0.84619 0.84643 0.83828 0.80902 0.93127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.79 9.49 37.16 0.35 -2.44 16 2 C 0.16 3.04 3.20 -67.93 -0.22 2.82 16 3 H 0.06 1.31 8.08 -51.93 -0.42 0.89 16 4 C 0.11 1.67 5.05 -4.04 -0.02 1.65 16 5 N -0.60 -9.04 2.73 -181.58 -0.50 -9.54 16 6 C 0.07 0.96 9.86 59.84 0.59 1.55 16 7 C 0.52 7.96 7.67 -10.99 -0.08 7.88 16 8 O -0.54 -10.17 15.56 5.55 0.09 -10.09 16 9 C -0.14 -1.50 4.25 -27.89 -0.12 -1.62 16 10 C -0.10 -1.14 4.87 -26.74 -0.13 -1.27 16 11 C 0.06 0.53 4.74 37.16 0.18 0.70 16 12 O -0.31 -3.41 10.14 -19.42 -0.20 -3.60 16 13 C 0.17 1.68 6.68 -39.23 -0.26 1.42 16 14 C -0.22 -1.82 9.04 -39.42 -0.36 -2.18 16 15 C -0.05 -0.36 10.04 -39.61 -0.40 -0.75 16 16 C -0.20 -1.56 10.02 -39.49 -0.40 -1.95 16 17 C 0.14 1.32 7.30 -39.44 -0.29 1.03 16 18 F -0.14 -1.37 17.27 2.25 0.04 -1.33 16 19 C -0.19 -1.94 9.97 -39.37 -0.39 -2.33 16 20 N -0.74 -16.50 4.37 -53.42 -0.23 -16.74 16 21 C -0.24 -6.40 10.41 -15.06 -0.16 -6.56 16 22 H 0.09 2.66 8.06 -52.48 -0.42 2.24 16 23 C 0.00 0.03 5.50 -17.43 -0.10 -0.06 16 24 N -0.93 -28.76 13.97 55.49 0.78 -27.99 16 25 Si 0.88 20.59 27.74 -169.99 -4.71 15.88 16 26 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 27 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 28 H -0.27 -5.53 4.90 56.52 0.28 -5.25 16 29 H 0.06 1.17 8.14 -51.92 -0.42 0.75 16 30 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.07 0.96 8.07 -51.93 -0.42 0.54 16 33 H 0.08 1.29 7.42 -51.93 -0.39 0.91 16 34 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.08 1.27 3.94 -51.93 -0.20 1.06 16 36 H 0.07 0.85 6.44 -51.93 -0.33 0.51 16 37 H 0.10 1.05 7.40 -51.93 -0.38 0.67 16 38 H 0.09 0.75 8.11 -51.93 -0.42 0.32 16 39 H 0.08 0.95 8.10 -51.93 -0.42 0.53 16 40 H 0.09 1.12 8.10 -51.93 -0.42 0.70 16 41 H 0.07 0.56 7.67 -51.93 -0.40 0.16 16 42 H 0.07 0.46 7.65 -51.93 -0.40 0.06 16 43 H 0.14 0.88 6.30 -52.49 -0.33 0.55 16 44 H 0.14 0.61 8.06 -52.49 -0.42 0.19 16 45 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 46 H 0.14 1.35 8.06 -52.49 -0.42 0.93 16 47 H 0.36 7.50 3.49 -40.82 -0.14 7.36 16 48 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 392.86 15.07 5.92 5.92 Total: -1.00 -33.33 392.86 -7.94 -41.27 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: -7.32 Total: 8.32 kcal Atomic # 6 Polarization: -0.31 SS G_CDS: -1.80 Total: -2.10 kcal Atomic # 7 Polarization: -54.31 SS G_CDS: 0.05 Total: -54.26 kcal Atomic # 8 Polarization: -13.58 SS G_CDS: -0.11 Total: -13.69 kcal Atomic # 9 Polarization: -1.37 SS G_CDS: 0.04 Total: -1.33 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -4.71 Total: 15.88 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.33 -7.94 -41.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717754994.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.401 kcal (2) G-P(sol) polarization free energy of solvation -33.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds