Wall clock time and date at job start Tue Mar 31 2020 21:07:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.47034 * 2 1 4 4 C 1.53001 * 109.47165 * 120.00780 * 2 1 3 5 5 N 1.46499 * 109.47025 * 174.99700 * 4 2 1 6 6 C 1.46491 * 120.00034 * 269.99625 * 5 4 2 7 7 C 1.34779 * 119.99872 * 90.00054 * 5 4 2 8 8 O 1.21286 * 120.00040 * 359.97438 * 7 5 4 9 9 C 1.50698 * 120.00201 * 179.97438 * 7 5 4 10 10 C 1.52992 * 109.47592 * 179.97438 * 9 7 5 11 11 C 1.52997 * 109.47482 * 179.97438 * 10 9 7 12 12 O 1.42898 * 109.47319 * 180.02562 * 11 10 9 13 13 C 1.35897 * 117.00481 * 180.02562 * 12 11 10 14 14 C 1.38774 * 120.03441 * 359.72088 * 13 12 11 15 15 C 1.38138 * 119.99122 * 179.74971 * 14 13 12 16 16 C 1.38257 * 120.07872 * 0.53010 * 15 14 13 17 17 C 1.38476 * 120.08328 * 359.74048 * 16 15 14 18 18 F 1.35105 * 119.99874 * 179.97438 * 17 16 15 19 19 C 1.38392 * 120.00736 * 359.97438 * 17 16 15 20 20 N 1.46503 * 109.46688 * 240.00252 * 2 1 3 21 21 C 1.36939 * 119.99673 * 85.00382 * 20 2 1 22 22 H 1.08003 * 120.00140 * 359.97438 * 21 20 2 23 23 C 1.38819 * 119.99842 * 179.97438 * 21 20 2 24 24 N 1.31618 * 119.99798 * 180.02562 * 23 21 20 25 25 Si 1.86798 * 120.00065 * 0.02562 * 23 21 20 26 26 H 1.48507 * 109.47035 * 89.99391 * 25 23 21 27 27 H 1.48496 * 109.47305 * 209.99658 * 25 23 21 28 28 H 1.48501 * 109.47151 * 329.99933 * 25 23 21 29 29 H 1.09007 * 109.47441 * 59.99333 * 1 2 3 30 30 H 1.08997 * 109.47601 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47184 * 299.99665 * 1 2 3 32 32 H 1.09000 * 109.47156 * 54.99783 * 4 2 1 33 33 H 1.09002 * 109.46731 * 294.99946 * 4 2 1 34 34 H 1.08999 * 109.47474 * 270.00311 * 6 5 4 35 35 H 1.08996 * 109.47479 * 30.00370 * 6 5 4 36 36 H 1.09007 * 109.47434 * 150.00229 * 6 5 4 37 37 H 1.09002 * 109.47210 * 59.99599 * 9 7 5 38 38 H 1.09001 * 109.46665 * 299.99857 * 9 7 5 39 39 H 1.09002 * 109.47103 * 59.99616 * 10 9 7 40 40 H 1.08998 * 109.46862 * 300.00428 * 10 9 7 41 41 H 1.09002 * 109.47153 * 59.99783 * 11 10 9 42 42 H 1.09001 * 109.46832 * 299.99974 * 11 10 9 43 43 H 1.07996 * 120.00577 * 0.02562 * 14 13 12 44 44 H 1.07993 * 119.96226 * 180.27412 * 15 14 13 45 45 H 1.07999 * 119.95967 * 179.77480 * 16 15 14 46 46 H 1.07997 * 120.03638 * 180.02562 * 19 17 16 47 47 H 0.96996 * 120.00419 * 264.99741 * 20 2 1 48 48 H 0.97004 * 119.99903 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 1.2491 5 7 3.5000 -0.8266 1.1904 6 6 4.1257 -1.9921 0.5610 7 6 4.2676 0.1489 1.7155 8 8 3.7495 1.1141 2.2363 9 6 5.7694 0.0405 1.6556 10 6 6.3963 1.2696 2.3168 11 6 7.9211 1.1592 2.2566 12 8 8.5066 2.3069 2.8747 13 6 9.8639 2.3662 2.9054 14 6 10.6167 1.3376 2.3568 15 6 11.9964 1.4013 2.3838 16 6 12.6288 2.4838 2.9668 17 6 11.8807 3.5093 3.5202 18 9 12.5005 4.5661 4.0898 19 6 10.4983 3.4519 3.4897 20 7 2.0182 -0.6906 -1.1963 21 6 2.1490 -0.0073 -2.3758 22 1 1.8918 1.0405 -2.4243 23 6 2.6121 -0.6615 -3.5092 24 7 2.7383 -0.0047 -4.6427 25 14 3.0562 -2.4740 -3.4255 26 1 1.8589 -3.2923 -3.7454 27 1 4.1319 -2.7659 -4.4067 28 1 3.5307 -2.8048 -2.0578 29 1 -0.3634 0.5140 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6053 -1.7200 1.2949 33 1 1.7516 -0.1585 2.1369 34 1 4.2821 -2.7690 1.3093 35 1 3.4756 -2.3722 -0.2270 36 1 5.0850 -1.7022 0.1322 37 1 6.0886 -0.0141 0.6148 38 1 6.0900 -0.8587 2.1817 39 1 6.0772 1.3247 3.3576 40 1 6.0756 2.1685 1.7905 41 1 8.2406 1.1038 1.2159 42 1 8.2414 0.2602 2.7833 43 1 10.1241 0.4895 1.9048 44 1 12.5817 0.6026 1.9528 45 1 13.7075 2.5298 2.9901 46 1 9.9145 4.2517 3.9208 47 1 2.2489 -1.6317 -1.1528 48 1 3.0616 -0.4619 -5.4348 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717754994.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:07:03 Heat of formation + Delta-G solvation = -100.402220 kcal Electronic energy + Delta-G solvation = -28598.769335 eV Core-core repulsion = 24375.304483 eV Total energy + Delta-G solvation = -4223.464852 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.98961 -41.21949 -40.89984 -38.43725 -38.05475 -35.84227 -34.91408 -33.96085 -31.90000 -31.42588 -30.77668 -28.91705 -27.99777 -26.53159 -25.28539 -24.12444 -23.59465 -22.38678 -21.77522 -20.35127 -19.65698 -19.43109 -18.14189 -17.53240 -17.50725 -17.24503 -17.10872 -16.87959 -16.75352 -16.61315 -16.48135 -15.75453 -15.46798 -15.21897 -14.78736 -14.72019 -14.62789 -14.18674 -13.93227 -13.73457 -13.72341 -13.40651 -13.31354 -13.16426 -13.10744 -12.98158 -12.75595 -12.70913 -12.47152 -12.36343 -12.29102 -12.15114 -11.88584 -11.76870 -11.65053 -11.58209 -11.01035 -10.79440 -9.93367 -9.61048 -9.33328 -9.23107 -7.98116 -5.32482 0.09089 0.26901 1.34626 1.46284 1.53193 1.67795 1.87885 2.27435 2.52633 2.57250 3.31524 3.33146 3.53817 3.58784 3.75292 3.90106 3.97213 3.98285 4.03773 4.11146 4.11523 4.25409 4.33958 4.38106 4.40572 4.43723 4.46863 4.60055 4.63321 4.70389 4.73131 4.86061 4.92589 4.98797 5.03546 5.07481 5.08881 5.17574 5.22788 5.23754 5.33037 5.37684 5.66853 5.71400 5.79814 6.23300 6.33543 6.47447 7.11240 7.23882 7.83555 8.08802 9.24040 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.014339 B = 0.002110 C = 0.001971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1952.228062 B =13269.471791 C =14200.477204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.156 3.844 3 H 0.018 0.982 4 C 0.114 3.886 5 N -0.605 5.605 6 C 0.067 3.933 7 C 0.504 3.496 8 O -0.590 6.590 9 C -0.127 4.127 10 C -0.098 4.098 11 C 0.061 3.939 12 O -0.332 6.332 13 C 0.146 3.854 14 C -0.219 4.219 15 C -0.045 4.045 16 C -0.194 4.194 17 C 0.120 3.880 18 F -0.144 7.144 19 C -0.213 4.213 20 N -0.738 5.738 21 C -0.225 4.225 22 H 0.038 0.962 23 C -0.071 4.071 24 N -0.991 5.991 25 Si 0.955 3.045 26 H -0.286 1.286 27 H -0.300 1.300 28 H -0.219 1.219 29 H 0.029 0.971 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.103 0.897 33 H 0.086 0.914 34 H 0.091 0.909 35 H 0.063 0.937 36 H 0.083 0.917 37 H 0.109 0.891 38 H 0.135 0.865 39 H 0.070 0.930 40 H 0.051 0.949 41 H 0.080 0.920 42 H 0.095 0.905 43 H 0.159 0.841 44 H 0.170 0.830 45 H 0.156 0.844 46 H 0.136 0.864 47 H 0.369 0.631 48 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.923 -6.907 18.887 26.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.047 3.953 3 H 0.037 0.963 4 C -0.010 4.010 5 N -0.335 5.335 6 C -0.075 4.075 7 C 0.294 3.706 8 O -0.471 6.471 9 C -0.167 4.167 10 C -0.137 4.137 11 C -0.013 4.013 12 O -0.246 6.246 13 C 0.100 3.900 14 C -0.237 4.237 15 C -0.062 4.062 16 C -0.213 4.213 17 C 0.100 3.900 18 F -0.123 7.123 19 C -0.232 4.232 20 N -0.384 5.384 21 C -0.356 4.356 22 H 0.056 0.944 23 C -0.261 4.261 24 N -0.642 5.642 25 Si 0.782 3.218 26 H -0.213 1.213 27 H -0.227 1.227 28 H -0.143 1.143 29 H 0.048 0.952 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.121 0.879 33 H 0.104 0.896 34 H 0.110 0.890 35 H 0.081 0.919 36 H 0.101 0.899 37 H 0.127 0.873 38 H 0.153 0.847 39 H 0.089 0.911 40 H 0.070 0.930 41 H 0.098 0.902 42 H 0.113 0.887 43 H 0.177 0.823 44 H 0.188 0.812 45 H 0.174 0.826 46 H 0.154 0.846 47 H 0.205 0.795 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 17.517 -6.079 19.130 26.641 hybrid contribution -0.157 0.023 -0.832 0.847 sum 17.361 -6.057 18.298 25.940 Atomic orbital electron populations 1.22210 0.96619 1.02027 1.00644 1.20753 0.93357 0.94829 0.86389 0.96340 1.21765 0.79787 1.02189 0.97215 1.47787 1.06576 1.22115 1.57057 1.22254 0.99393 0.87478 0.98411 1.21195 0.91012 0.81392 0.76969 1.90665 1.76345 1.32691 1.47407 1.21557 0.89527 1.00977 1.04590 1.21121 0.92454 0.97974 1.02113 1.23002 0.92551 0.87123 0.98646 1.86048 1.17235 1.45638 1.75660 1.18814 0.82690 0.94025 0.94463 1.21708 0.95563 1.00369 1.06075 1.21227 0.93552 0.97121 0.94335 1.21380 1.01880 0.94602 1.03444 1.17521 0.89906 0.85650 0.96881 1.91492 1.82769 1.55354 1.82669 1.20381 0.93214 1.01081 1.08537 1.42638 1.80022 1.09427 1.06316 1.18895 1.35228 0.93812 0.87661 0.94408 1.25616 1.02284 1.03439 0.94771 1.69933 1.54829 1.38109 1.01344 0.85506 0.77483 0.79363 0.79494 1.21304 1.22698 1.14273 0.95155 0.91593 0.91363 0.87918 0.89612 0.89037 0.91869 0.89859 0.87332 0.84749 0.91124 0.93013 0.90184 0.88665 0.82347 0.81218 0.82610 0.84643 0.79529 0.93536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.21 9.49 71.98 0.68 -4.53 16 2 C 0.16 5.91 3.20 44.99 0.14 6.05 16 3 H 0.02 0.85 8.08 -2.39 -0.02 0.83 16 4 C 0.11 3.29 5.05 86.38 0.44 3.73 16 5 N -0.60 -16.59 2.73 -846.77 -2.31 -18.90 16 6 C 0.07 1.40 9.86 127.77 1.26 2.66 16 7 C 0.50 14.85 7.67 87.66 0.67 15.52 16 8 O -0.59 -22.44 15.56 -3.05 -0.05 -22.49 16 9 C -0.13 -2.45 4.25 29.84 0.13 -2.32 16 10 C -0.10 -2.11 4.87 30.59 0.15 -1.96 16 11 C 0.06 0.98 4.74 71.98 0.34 1.32 16 12 O -0.33 -7.29 10.14 -92.39 -0.94 -8.23 16 13 C 0.15 2.87 6.68 22.50 0.15 3.02 16 14 C -0.22 -3.02 9.04 22.37 0.20 -2.82 16 15 C -0.04 -0.49 10.04 22.25 0.22 -0.27 16 16 C -0.19 -2.68 10.02 22.33 0.22 -2.46 16 17 C 0.12 2.27 7.30 22.36 0.16 2.43 16 18 F -0.14 -2.98 17.27 44.97 0.78 -2.20 16 19 C -0.21 -4.42 9.97 22.41 0.22 -4.19 16 20 N -0.74 -32.16 4.37 -322.93 -1.41 -33.57 16 21 C -0.22 -12.59 10.41 84.03 0.87 -11.72 16 22 H 0.04 2.45 8.06 -2.91 -0.02 2.42 16 23 C -0.07 -4.04 5.50 84.86 0.47 -3.57 16 24 N -0.99 -63.14 13.97 21.65 0.30 -62.84 16 25 Si 0.96 41.46 27.74 68.60 1.90 43.36 16 26 H -0.29 -12.48 7.11 99.48 0.71 -11.77 16 27 H -0.30 -13.42 7.11 99.48 0.71 -12.71 16 28 H -0.22 -7.46 4.90 99.48 0.49 -6.98 16 29 H 0.03 1.17 8.14 -2.38 -0.02 1.16 16 30 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.10 2.34 8.07 -2.39 -0.02 2.32 16 33 H 0.09 2.49 7.42 -2.39 -0.02 2.47 16 34 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.06 1.59 3.94 -2.39 -0.01 1.58 16 36 H 0.08 1.55 6.44 -2.38 -0.02 1.53 16 37 H 0.11 1.95 7.40 -2.39 -0.02 1.93 16 38 H 0.13 1.48 8.11 -2.39 -0.02 1.46 16 39 H 0.07 1.65 8.10 -2.39 -0.02 1.63 16 40 H 0.05 1.43 8.10 -2.39 -0.02 1.42 16 41 H 0.08 1.09 7.67 -2.39 -0.02 1.07 16 42 H 0.10 0.96 7.65 -2.39 -0.02 0.94 16 43 H 0.16 1.40 6.30 -2.91 -0.02 1.38 16 44 H 0.17 0.71 8.06 -2.91 -0.02 0.69 16 45 H 0.16 1.44 8.06 -2.91 -0.02 1.42 16 46 H 0.14 2.83 8.06 -2.91 -0.02 2.81 16 47 H 0.37 14.40 3.49 -92.71 -0.32 14.07 16 48 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 Total: -1.00 -79.58 392.86 5.04 -74.54 By element: Atomic # 1 Polarization: 29.01 SS G_CDS: 0.42 Total: 29.43 kcal Atomic # 6 Polarization: -5.44 SS G_CDS: 6.34 Total: 0.90 kcal Atomic # 7 Polarization: -111.89 SS G_CDS: -3.42 Total: -115.31 kcal Atomic # 8 Polarization: -29.74 SS G_CDS: -0.98 Total: -30.72 kcal Atomic # 9 Polarization: -2.98 SS G_CDS: 0.78 Total: -2.20 kcal Atomic # 14 Polarization: 41.46 SS G_CDS: 1.90 Total: 43.36 kcal Total: -79.58 5.04 -74.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717754994.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.862 kcal (2) G-P(sol) polarization free energy of solvation -79.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds