Wall clock time and date at job start Tue Mar 31 2020 21:57:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86806 * 120.00088 * 2 1 4 4 H 1.48493 * 109.47306 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47114 * 300.00373 * 3 2 1 6 6 H 1.48504 * 109.46877 * 59.99690 * 3 2 1 7 7 C 1.38812 * 120.00456 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00001 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99424 * 0.02562 * 7 2 1 10 10 C 1.46501 * 119.99818 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47300 * 179.97438 * 10 9 7 12 12 N 1.46501 * 109.47300 * 180.02562 * 11 10 9 13 13 C 1.46499 * 119.99663 * 270.00102 * 12 11 10 14 14 C 1.53003 * 109.47258 * 281.72222 * 13 12 11 15 15 O 1.42898 * 109.46859 * 67.91559 * 14 13 12 16 16 C 1.34778 * 119.99862 * 90.00230 * 12 11 10 17 17 O 1.21276 * 119.99878 * 6.64937 * 16 12 11 18 18 C 1.50700 * 119.99672 * 186.65042 * 16 12 11 19 19 H 1.08995 * 107.91413 * 34.78328 * 18 16 12 20 20 C 1.51009 * 108.05372 * 278.17608 * 18 16 12 21 21 C 1.53634 * 110.89847 * 166.13498 * 20 18 16 22 22 C 1.51807 * 106.92099 * 79.04033 * 21 20 18 23 23 N 1.30315 * 127.90480 * 114.41861 * 22 21 20 24 24 N 1.29272 * 107.46169 * 179.97438 * 23 22 21 25 25 N 1.29150 * 109.43271 * 0.02562 * 24 23 22 26 26 N 1.28399 * 108.35669 * 0.02562 * 25 24 23 27 27 C 1.47659 * 127.75461 * 180.02562 * 26 25 24 28 28 C 1.50877 * 108.05031 * 151.39594 * 18 16 12 29 29 H 0.97001 * 120.00138 * 359.97438 * 1 2 3 30 30 H 0.97004 * 120.00110 * 359.97438 * 9 7 2 31 31 H 1.09002 * 109.47262 * 59.99896 * 10 9 7 32 32 H 1.08996 * 109.47379 * 299.99753 * 10 9 7 33 33 H 1.09002 * 109.46616 * 60.00030 * 11 10 9 34 34 H 1.08996 * 109.47135 * 300.00432 * 11 10 9 35 35 H 1.09002 * 109.47353 * 41.72954 * 13 12 11 36 36 H 1.09007 * 109.46750 * 161.72365 * 13 12 11 37 37 H 1.09005 * 109.46782 * 187.91760 * 14 13 12 38 38 H 1.08997 * 109.46725 * 307.91481 * 14 13 12 39 39 H 0.96694 * 113.99903 * 179.97438 * 15 14 13 40 40 H 1.09003 * 109.19990 * 286.53482 * 20 18 16 41 41 H 1.09003 * 109.19865 * 45.81395 * 20 18 16 42 42 H 1.09001 * 109.97101 * 319.69007 * 21 20 18 43 43 H 1.08998 * 109.97429 * 198.39569 * 21 20 18 44 44 H 1.08996 * 109.91600 * 126.33431 * 27 26 25 45 45 H 1.08997 * 109.91554 * 5.15446 * 27 26 25 46 46 H 1.08996 * 109.13233 * 314.69362 * 28 18 16 47 47 H 1.08997 * 109.12886 * 73.86294 * 28 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6567 0.0005 11 6 1.0639 -4.8197 0.0012 12 7 1.7964 -6.0884 0.0018 13 6 2.1626 -6.7233 -1.2666 14 6 0.9400 -7.4309 -1.8545 15 8 -0.0277 -6.4578 -2.2528 16 6 2.1334 -6.6714 1.1693 17 8 1.7279 -6.2118 2.2158 18 6 3.0140 -7.8943 1.1742 19 1 3.7306 -7.7947 0.3591 20 6 2.1462 -9.0971 0.8901 21 6 3.0049 -10.3220 0.5402 22 6 3.5285 -10.8833 1.8499 23 7 3.2527 -12.0345 2.3947 24 7 3.9133 -12.1070 3.5036 25 7 4.5983 -11.0245 3.6672 26 7 4.3802 -10.2524 2.6647 27 6 4.9452 -8.9109 2.4169 28 6 3.7822 -7.9120 2.4727 29 1 -0.4850 0.8400 0.0004 30 1 0.3555 -2.3880 0.0005 31 1 2.6848 -3.7145 0.8905 32 1 2.6847 -3.7145 -0.8894 33 1 0.4369 -4.7621 -0.8886 34 1 0.4376 -4.7617 0.8913 35 1 2.5137 -5.9638 -1.9652 36 1 2.9551 -7.4513 -1.0930 37 1 1.2423 -8.0187 -2.7213 38 1 0.5050 -8.0894 -1.1027 39 1 -0.8311 -6.8358 -2.6357 40 1 1.5441 -9.3208 1.7707 41 1 1.4854 -8.8725 0.0527 42 1 3.8380 -10.0232 -0.0961 43 1 2.3967 -11.0700 0.0315 44 1 5.4121 -8.8808 1.4325 45 1 5.6800 -8.6699 3.1850 46 1 4.1768 -6.9149 2.6679 47 1 3.1091 -8.1945 3.2821 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724680664.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:57:42 Heat of formation + Delta-G solvation = 53.980676 kcal Electronic energy + Delta-G solvation = -30292.917924 eV Core-core repulsion = 26128.360330 eV Total energy + Delta-G solvation = -4164.557595 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.185 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -44.64789 -40.76591 -37.87729 -37.29749 -35.65586 -35.40514 -34.35354 -33.03367 -31.90043 -31.38920 -29.61224 -28.43081 -26.98276 -25.51452 -24.06939 -23.80410 -23.29858 -22.20299 -21.54309 -21.08591 -19.05076 -18.45876 -17.85148 -17.48637 -17.21548 -16.91677 -16.37620 -15.92898 -15.59846 -15.18730 -14.71429 -14.47734 -14.38047 -14.12217 -13.87390 -13.73136 -13.55177 -13.32268 -13.16693 -12.98750 -12.79774 -12.59726 -12.47686 -12.33048 -12.14265 -11.89328 -11.73147 -11.40556 -11.36768 -11.24212 -11.17375 -10.94686 -10.90725 -10.65957 -10.40681 -10.19441 -10.09040 -9.82343 -9.67059 -8.88164 -8.60901 -6.93265 -5.76455 -3.05660 0.96642 1.61926 1.93011 2.48161 2.81211 3.40188 3.42949 3.48077 3.50663 3.73521 3.80531 3.85583 3.93941 4.18872 4.32895 4.41946 4.49532 4.60355 4.61183 4.65796 4.70413 4.79728 4.83660 4.98222 5.01854 5.15773 5.18992 5.20869 5.26620 5.38875 5.44226 5.54320 5.59171 5.61703 5.76055 5.84537 5.89615 6.03745 6.21526 6.48333 6.71921 6.88774 7.33048 7.45768 7.69172 8.09652 8.30831 8.41893 9.52869 10.09830 10.44613 11.46474 Molecular weight = 338.19amu Principal moments of inertia in cm(-1) A = 0.017552 B = 0.002538 C = 0.002306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.876066 B =11031.252878 C =12137.094989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.014 4.014 3 Si 0.908 3.092 4 H -0.281 1.281 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.238 4.238 8 H 0.070 0.930 9 N -0.729 5.729 10 C 0.145 3.855 11 C 0.106 3.894 12 N -0.597 5.597 13 C 0.100 3.900 14 C 0.056 3.944 15 O -0.560 6.560 16 C 0.511 3.489 17 O -0.527 6.527 18 C -0.114 4.114 19 H 0.098 0.902 20 C -0.121 4.121 21 C -0.034 4.034 22 C 0.180 3.820 23 N -0.302 5.302 24 N -0.085 5.085 25 N -0.091 5.091 26 N -0.301 5.301 27 C 0.116 3.884 28 C -0.123 4.123 29 H 0.255 0.745 30 H 0.384 0.616 31 H 0.017 0.983 32 H 0.016 0.984 33 H 0.096 0.904 34 H 0.081 0.919 35 H 0.091 0.909 36 H 0.095 0.905 37 H 0.056 0.944 38 H 0.049 0.951 39 H 0.379 0.621 40 H 0.080 0.920 41 H 0.095 0.905 42 H 0.100 0.900 43 H 0.115 0.885 44 H 0.113 0.887 45 H 0.123 0.877 46 H 0.109 0.891 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.717 -23.713 -5.096 25.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.210 4.210 3 Si 0.739 3.261 4 H -0.206 1.206 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.369 4.369 8 H 0.088 0.912 9 N -0.374 5.374 10 C 0.017 3.983 11 C -0.016 4.016 12 N -0.330 5.330 13 C -0.024 4.024 14 C -0.023 4.023 15 O -0.366 6.366 16 C 0.297 3.703 17 O -0.402 6.402 18 C -0.135 4.135 19 H 0.116 0.884 20 C -0.160 4.160 21 C -0.074 4.074 22 C -0.099 4.099 23 N -0.150 5.150 24 N -0.078 5.078 25 N -0.077 5.077 26 N -0.104 5.104 27 C -0.005 4.005 28 C -0.162 4.162 29 H 0.065 0.935 30 H 0.218 0.782 31 H 0.034 0.966 32 H 0.034 0.966 33 H 0.114 0.886 34 H 0.099 0.901 35 H 0.109 0.891 36 H 0.113 0.887 37 H 0.074 0.926 38 H 0.067 0.933 39 H 0.226 0.774 40 H 0.099 0.901 41 H 0.113 0.887 42 H 0.119 0.881 43 H 0.134 0.866 44 H 0.131 0.869 45 H 0.142 0.858 46 H 0.127 0.873 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 8.217 -23.906 -3.262 25.488 hybrid contribution -0.172 1.325 -0.846 1.582 sum 8.045 -22.581 -4.108 24.320 Atomic orbital electron populations 1.69670 1.05101 1.25560 1.57723 1.24753 0.95553 0.97704 1.03003 0.86104 0.78718 0.84073 0.77208 1.20598 1.21828 1.21823 1.19230 0.90967 0.83996 1.42684 0.91225 1.42202 1.05909 0.99740 1.89525 1.20870 0.93895 0.85959 0.97597 1.21831 0.94780 0.80794 1.04224 1.47846 1.56810 1.23469 1.04866 1.21815 0.95650 0.98625 0.86306 1.22770 0.90537 0.91085 0.97919 1.86610 1.31029 1.35118 1.83814 1.20442 0.81283 0.84645 0.83904 1.90765 1.53743 1.64531 1.31170 1.20794 0.98128 0.94655 0.99942 0.88427 1.21510 0.98049 0.91884 1.04510 1.20710 1.00512 0.97819 0.88358 1.25966 0.94628 0.90706 0.98555 1.74961 1.20358 1.15639 1.04086 1.78883 1.05507 1.13062 1.10383 1.78879 1.20197 0.98910 1.09717 1.48680 1.30792 1.16842 1.14123 1.22855 0.97534 0.74610 1.05462 1.21529 0.96173 1.00487 0.97977 0.93522 0.78205 0.96555 0.96625 0.88598 0.90104 0.89087 0.88683 0.92555 0.93338 0.77411 0.90110 0.88684 0.88140 0.86632 0.86856 0.85836 0.87281 0.89376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.49 13.06 55.49 0.72 -27.77 16 2 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 3 Si 0.91 22.54 29.55 -169.99 -5.02 17.51 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 7 C -0.24 -6.76 9.99 -15.06 -0.15 -6.91 16 8 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 9 N -0.73 -18.92 5.60 -59.91 -0.34 -19.26 16 10 C 0.15 2.98 6.58 -4.04 -0.03 2.96 16 11 C 0.11 1.76 5.45 -4.04 -0.02 1.74 16 12 N -0.60 -7.09 2.49 -173.68 -0.43 -7.52 16 13 C 0.10 0.75 5.39 -4.04 -0.02 0.73 16 14 C 0.06 0.35 6.97 37.16 0.26 0.61 16 15 O -0.56 -5.19 11.64 -35.23 -0.41 -5.60 16 16 C 0.51 6.10 6.44 -10.98 -0.07 6.03 16 17 O -0.53 -8.98 15.75 5.56 0.09 -8.90 16 18 C -0.11 -0.74 1.29 -93.84 -0.12 -0.86 16 19 H 0.10 0.33 5.78 -51.93 -0.30 0.03 16 20 C -0.12 -0.65 4.61 -27.40 -0.13 -0.77 16 21 C -0.03 -0.13 6.00 -27.01 -0.16 -0.29 16 22 C 0.18 1.51 7.10 -156.72 -1.11 0.40 16 23 N -0.30 -3.60 12.37 32.63 0.40 -3.20 16 24 N -0.08 -1.15 13.45 60.32 0.81 -0.33 16 25 N -0.09 -1.08 13.36 60.35 0.81 -0.27 16 26 N -0.30 -2.54 3.36 -57.35 -0.19 -2.73 16 27 C 0.12 0.53 6.72 -3.19 -0.02 0.51 16 28 C -0.12 -0.84 4.36 -27.58 -0.12 -0.96 16 29 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 30 H 0.38 10.48 7.67 -40.82 -0.31 10.16 16 31 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 33 H 0.10 1.62 6.17 -51.93 -0.32 1.29 16 34 H 0.08 1.55 7.34 -51.93 -0.38 1.17 16 35 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.10 0.34 5.30 -51.93 -0.28 0.06 16 37 H 0.06 0.21 8.14 -51.93 -0.42 -0.22 16 38 H 0.05 0.27 5.99 -51.93 -0.31 -0.04 16 39 H 0.38 1.94 9.12 45.56 0.42 2.35 16 40 H 0.08 0.63 7.92 -51.93 -0.41 0.22 16 41 H 0.09 0.41 4.50 -51.93 -0.23 0.18 16 42 H 0.10 0.10 7.89 -51.93 -0.41 -0.31 16 43 H 0.12 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.11 0.16 7.87 -51.93 -0.41 -0.25 16 45 H 0.12 0.44 8.14 -51.93 -0.42 0.01 16 46 H 0.11 0.80 7.93 -51.93 -0.41 0.39 16 47 H 0.09 0.84 8.08 -51.93 -0.42 0.42 16 LS Contribution 374.92 15.07 5.65 5.65 Total: -1.00 -39.95 374.92 -5.57 -45.52 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: -5.86 Total: 4.25 kcal Atomic # 6 Polarization: 4.46 SS G_CDS: -1.79 Total: 2.66 kcal Atomic # 7 Polarization: -62.87 SS G_CDS: 1.78 Total: -61.09 kcal Atomic # 8 Polarization: -14.18 SS G_CDS: -0.32 Total: -14.50 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -39.95 -5.57 -45.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724680664.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.497 kcal (2) G-P(sol) polarization free energy of solvation -39.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.516 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds