Wall clock time and date at job start Tue Mar 31 2020 21:15:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47319 * 2 1 4 4 C 1.52996 * 109.46807 * 240.00270 * 2 1 3 5 5 N 1.46501 * 109.47075 * 184.99633 * 4 2 1 6 6 C 1.34779 * 120.00128 * 180.02562 * 5 4 2 7 7 O 1.21284 * 120.00041 * 359.97438 * 6 5 4 8 8 C 1.50703 * 120.00121 * 180.02562 * 6 5 4 9 9 C 1.52996 * 109.47068 * 179.97438 * 8 6 5 10 10 C 1.53002 * 109.47026 * 179.97438 * 9 8 6 11 11 O 1.42901 * 109.47080 * 180.02562 * 10 9 8 12 12 C 1.35948 * 116.99947 * 180.02562 * 11 10 9 13 13 C 1.38709 * 120.02817 * 359.71834 * 12 11 10 14 14 C 1.38151 * 119.96613 * 179.79056 * 13 12 11 15 15 C 1.38449 * 120.03082 * 0.48925 * 14 13 12 16 16 F 1.35105 * 119.97161 * 179.72289 * 15 14 13 17 17 C 1.38452 * 120.05984 * 359.74399 * 15 14 13 18 18 C 1.38147 * 120.03544 * 0.02562 * 17 15 14 19 19 N 1.46499 * 109.47163 * 120.00165 * 2 1 3 20 20 C 1.46500 * 120.00027 * 60.00348 * 19 2 1 21 21 C 1.36936 * 119.99665 * 239.99868 * 19 2 1 22 22 H 1.07999 * 120.00417 * 23.11864 * 21 19 2 23 23 C 1.38813 * 119.99639 * 203.12223 * 21 19 2 24 24 N 1.31619 * 120.00088 * 11.68578 * 23 21 19 25 25 Si 1.86797 * 120.00185 * 191.68935 * 23 21 19 26 26 H 1.48493 * 109.47542 * 89.99810 * 25 23 21 27 27 H 1.48504 * 109.47421 * 209.99818 * 25 23 21 28 28 H 1.48504 * 109.46869 * 329.99641 * 25 23 21 29 29 H 1.08992 * 109.47427 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47550 * 59.99369 * 1 2 3 31 31 H 1.09005 * 109.46948 * 299.99839 * 1 2 3 32 32 H 1.08999 * 109.47454 * 304.99739 * 4 2 1 33 33 H 1.09008 * 109.47123 * 65.00088 * 4 2 1 34 34 H 0.97002 * 120.00065 * 0.02562 * 5 4 2 35 35 H 1.08999 * 109.46612 * 299.99875 * 8 6 5 36 36 H 1.08994 * 109.47228 * 59.99595 * 8 6 5 37 37 H 1.08999 * 109.47454 * 299.99546 * 9 8 6 38 38 H 1.09008 * 109.47123 * 59.99895 * 9 8 6 39 39 H 1.08999 * 109.46881 * 300.00200 * 10 9 8 40 40 H 1.08994 * 109.47002 * 59.99945 * 10 9 8 41 41 H 1.07996 * 120.01621 * 0.02562 * 13 12 11 42 42 H 1.07998 * 119.98268 * 180.20795 * 14 13 12 43 43 H 1.08007 * 119.98690 * 180.02562 * 17 15 14 44 44 H 1.07999 * 120.02197 * 179.97438 * 18 17 15 45 45 H 1.08993 * 109.47477 * 93.93311 * 20 19 2 46 46 H 1.08999 * 109.47020 * 213.93589 * 20 19 2 47 47 H 1.09003 * 109.46756 * 333.93087 * 20 19 2 48 48 H 0.97001 * 120.00297 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 3.5000 -0.8263 -1.1907 6 6 4.1730 -1.4281 -2.1914 7 8 3.5698 -1.8831 -3.1401 8 6 5.6749 -1.5367 -2.1308 9 6 6.1848 -2.2578 -3.3802 10 6 7.7097 -2.3675 -3.3190 11 8 8.1860 -3.0405 -4.4862 12 6 9.5294 -3.2220 -4.5889 13 6 10.3711 -2.7566 -3.5895 14 6 11.7357 -2.9456 -3.6931 15 6 12.2640 -3.5903 -4.7986 16 9 13.5992 -3.7696 -4.9013 17 6 11.4253 -4.0511 -5.7992 18 6 10.0599 -3.8677 -5.6960 19 7 2.0183 -0.6906 1.1961 20 6 1.6645 -2.0932 1.4279 21 6 2.8056 -0.0251 2.0975 22 1 2.7707 1.0529 2.1525 23 6 3.6487 -0.7361 2.9404 24 7 3.8673 -2.0162 2.7259 25 14 4.4729 0.1237 4.3794 26 1 3.6016 0.0284 5.5781 27 1 5.7777 -0.5263 4.6631 28 1 4.6949 1.5525 4.0411 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 0.5138 0.8900 32 1 1.6053 -1.7197 -1.2952 33 1 1.7515 -0.1581 -2.1370 34 1 3.9823 -0.4627 -0.4317 35 1 6.1097 -0.5383 -2.0842 36 1 5.9629 -2.1003 -1.2435 37 1 5.7500 -3.2562 -3.4264 38 1 5.8967 -1.6945 -4.2679 39 1 8.1442 -1.3689 -3.2730 40 1 7.9981 -2.9305 -2.4314 41 1 9.9597 -2.2500 -2.7290 42 1 12.3911 -2.5863 -2.9135 43 1 11.8386 -4.5543 -6.6609 44 1 9.4060 -4.2269 -6.4768 45 1 2.4507 -2.7364 1.0328 46 1 1.5554 -2.2683 2.4982 47 1 0.7239 -2.3185 0.9252 48 1 4.4567 -2.5130 3.3147 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725172520.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:06 Heat of formation + Delta-G solvation = -84.827943 kcal Electronic energy + Delta-G solvation = -28364.911287 eV Core-core repulsion = 24142.121786 eV Total energy + Delta-G solvation = -4222.789501 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.08097 -40.37938 -39.25276 -37.60366 -36.76412 -33.84928 -33.60114 -32.05670 -31.56582 -29.77843 -29.35414 -27.61096 -26.08444 -25.36120 -23.65742 -23.07030 -22.53852 -21.50144 -19.78324 -19.27408 -18.53428 -17.65011 -17.00565 -16.95526 -16.57704 -16.32057 -15.79700 -15.50551 -15.31925 -15.02792 -14.92647 -14.49921 -14.15481 -13.95874 -13.54173 -13.48806 -13.29017 -12.90649 -12.82168 -12.60909 -12.50465 -12.22916 -12.06145 -11.99627 -11.63881 -11.59415 -11.27953 -11.11022 -11.00772 -10.87165 -10.74712 -10.67240 -10.45481 -10.34060 -9.92859 -9.84025 -9.53556 -9.39982 -8.66200 -8.39082 -8.38167 -6.87352 -5.82720 -3.30948 0.81487 0.90534 2.83070 3.12819 3.24946 3.29173 3.36614 3.37768 3.84679 4.00874 4.34431 4.38310 4.44020 4.74922 4.77835 4.80964 4.96023 4.99957 5.14619 5.30213 5.32093 5.33669 5.36642 5.48692 5.53929 5.58156 5.72209 5.79224 5.80899 5.91484 5.93187 6.04485 6.06133 6.12860 6.20867 6.33193 6.36445 6.39780 6.65961 6.77138 6.86797 7.10079 7.12443 7.34366 7.66769 7.72759 8.18996 8.28739 8.79047 9.12968 9.75936 10.25998 11.20159 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.012979 B = 0.002073 C = 0.001836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2156.879887 B =13503.085798 C =15249.239820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.158 3.842 3 H 0.068 0.932 4 C 0.108 3.892 5 N -0.700 5.700 6 C 0.511 3.489 7 O -0.564 6.564 8 C -0.138 4.138 9 C -0.100 4.100 10 C 0.057 3.943 11 O -0.309 6.309 12 C 0.128 3.872 13 C -0.182 4.182 14 C -0.111 4.111 15 C 0.052 3.948 16 F -0.143 7.143 17 C -0.113 4.113 18 C -0.127 4.127 19 N -0.594 5.594 20 C 0.164 3.836 21 C -0.260 4.260 22 H 0.067 0.933 23 C 0.005 3.995 24 N -0.902 5.902 25 Si 0.902 3.098 26 H -0.289 1.289 27 H -0.292 1.292 28 H -0.280 1.280 29 H 0.051 0.949 30 H 0.045 0.955 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.052 0.948 34 H 0.415 0.585 35 H 0.092 0.908 36 H 0.099 0.901 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.065 0.935 40 H 0.067 0.933 41 H 0.140 0.860 42 H 0.138 0.862 43 H 0.141 0.859 44 H 0.142 0.858 45 H 0.028 0.972 46 H 0.041 0.959 47 H -0.002 1.002 48 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.958 -0.561 -13.141 17.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.049 3.951 3 H 0.086 0.914 4 C -0.018 4.018 5 N -0.350 5.350 6 C 0.297 3.703 7 O -0.444 6.444 8 C -0.178 4.178 9 C -0.138 4.138 10 C -0.018 4.018 11 O -0.222 6.222 12 C 0.082 3.918 13 C -0.201 4.201 14 C -0.130 4.130 15 C 0.033 3.967 16 F -0.122 7.122 17 C -0.132 4.132 18 C -0.145 4.145 19 N -0.317 5.317 20 C 0.019 3.981 21 C -0.389 4.389 22 H 0.085 0.915 23 C -0.194 4.194 24 N -0.546 5.546 25 Si 0.732 3.268 26 H -0.216 1.216 27 H -0.218 1.218 28 H -0.206 1.206 29 H 0.070 0.930 30 H 0.064 0.936 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.252 0.748 35 H 0.110 0.890 36 H 0.117 0.883 37 H 0.100 0.900 38 H 0.099 0.901 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.158 0.842 42 H 0.155 0.845 43 H 0.159 0.841 44 H 0.159 0.841 45 H 0.047 0.953 46 H 0.060 0.940 47 H 0.016 0.984 48 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 10.508 -1.054 -13.800 17.378 hybrid contribution 1.058 0.547 1.588 1.986 sum 11.567 -0.507 -12.212 16.828 Atomic orbital electron populations 1.22172 0.97539 1.01455 1.00636 1.20651 0.92586 0.95866 0.86011 0.91384 1.21918 0.80213 1.00908 0.98810 1.45857 1.08136 1.58020 1.23023 1.20348 0.89538 0.77930 0.82520 1.90650 1.70559 1.49006 1.34202 1.21485 0.93659 1.02851 0.99809 1.21200 0.90997 1.03062 0.98499 1.22971 0.96051 0.96430 0.86335 1.86107 1.18509 1.73900 1.43686 1.19078 0.83143 0.95242 0.94380 1.21212 0.93268 1.05104 1.00520 1.20962 0.95555 0.99092 0.97379 1.17580 0.77516 1.04252 0.97338 1.91488 1.30490 1.93897 1.96343 1.20952 0.92680 1.00711 0.98866 1.20316 0.94285 1.02002 0.97920 1.43938 1.57874 1.09657 1.20227 1.20745 0.93920 0.84489 0.98930 1.19222 1.15962 0.91136 1.12622 0.91483 1.25014 0.97919 0.96142 1.00292 1.70077 1.38992 1.07349 1.38231 0.86303 0.78650 0.78751 0.83055 1.21584 1.21810 1.20555 0.92958 0.93573 0.92458 0.92492 0.92974 0.74829 0.88979 0.88264 0.89968 0.90147 0.91677 0.91472 0.84197 0.84450 0.84130 0.84057 0.95321 0.93979 0.98359 0.93730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.55 9.18 37.16 0.34 -2.21 16 2 C 0.16 2.91 2.87 -67.93 -0.19 2.71 16 3 H 0.07 1.24 7.87 -51.93 -0.41 0.83 16 4 C 0.11 1.94 4.97 -4.04 -0.02 1.92 16 5 N -0.70 -12.61 5.39 -60.29 -0.32 -12.94 16 6 C 0.51 8.83 7.83 -10.98 -0.09 8.75 16 7 O -0.56 -11.41 15.98 5.55 0.09 -11.32 16 8 C -0.14 -1.78 5.70 -27.88 -0.16 -1.94 16 9 C -0.10 -1.21 4.87 -26.73 -0.13 -1.34 16 10 C 0.06 0.57 4.74 37.16 0.18 0.75 16 11 O -0.31 -3.54 10.14 -19.58 -0.20 -3.73 16 12 C 0.13 1.32 6.69 -39.23 -0.26 1.06 16 13 C -0.18 -1.69 9.04 -39.44 -0.36 -2.04 16 14 C -0.11 -1.00 10.02 -39.54 -0.40 -1.39 16 15 C 0.05 0.50 7.30 -39.42 -0.29 0.22 16 16 F -0.14 -1.48 17.27 2.25 0.04 -1.44 16 17 C -0.11 -0.97 10.02 -39.54 -0.40 -1.36 16 18 C -0.13 -1.16 9.99 -39.44 -0.39 -1.55 16 19 N -0.59 -13.25 2.29 -173.49 -0.40 -13.64 16 20 C 0.16 3.79 8.11 59.85 0.49 4.27 16 21 C -0.26 -6.36 9.32 -15.06 -0.14 -6.50 16 22 H 0.07 1.62 7.82 -52.49 -0.41 1.21 16 23 C 0.01 0.13 5.12 -17.43 -0.09 0.04 16 24 N -0.90 -23.89 10.65 55.49 0.59 -23.30 16 25 Si 0.90 20.22 29.57 -169.99 -5.03 15.20 16 26 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 27 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 28 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 29 H 0.05 0.86 6.66 -51.93 -0.35 0.51 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.06 1.12 7.84 -51.93 -0.41 0.71 16 33 H 0.05 0.88 8.14 -51.92 -0.42 0.46 16 34 H 0.41 7.81 7.89 -40.82 -0.32 7.49 16 35 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 37 H 0.08 1.12 8.10 -51.93 -0.42 0.70 16 38 H 0.08 1.03 8.10 -51.92 -0.42 0.61 16 39 H 0.07 0.55 7.65 -51.93 -0.40 0.15 16 40 H 0.07 0.62 7.67 -51.93 -0.40 0.22 16 41 H 0.14 1.08 6.30 -52.49 -0.33 0.75 16 42 H 0.14 0.99 8.06 -52.49 -0.42 0.56 16 43 H 0.14 0.88 8.06 -52.48 -0.42 0.46 16 44 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 45 H 0.03 0.72 7.41 -51.93 -0.38 0.34 16 46 H 0.04 1.06 7.23 -51.93 -0.38 0.69 16 47 H 0.00 -0.04 6.43 -51.93 -0.33 -0.38 16 48 H 0.25 6.61 8.31 -40.82 -0.34 6.27 16 LS Contribution 398.52 15.07 6.01 6.01 Total: -1.00 -29.02 398.52 -8.60 -37.62 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: -7.47 Total: 6.16 kcal Atomic # 6 Polarization: 3.30 SS G_CDS: -1.91 Total: 1.39 kcal Atomic # 7 Polarization: -49.75 SS G_CDS: -0.13 Total: -49.88 kcal Atomic # 8 Polarization: -14.94 SS G_CDS: -0.11 Total: -15.05 kcal Atomic # 9 Polarization: -1.48 SS G_CDS: 0.04 Total: -1.44 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.03 Total: 15.20 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -29.02 -8.60 -37.62 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725172520.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.203 kcal (2) G-P(sol) polarization free energy of solvation -29.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds