Wall clock time and date at job start Tue Mar 31 2020 21:15:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47319 * 2 1 4 4 C 1.52996 * 109.46807 * 240.00270 * 2 1 3 5 5 N 1.46501 * 109.47075 * 184.99633 * 4 2 1 6 6 C 1.34779 * 120.00128 * 180.02562 * 5 4 2 7 7 O 1.21284 * 120.00041 * 359.97438 * 6 5 4 8 8 C 1.50703 * 120.00121 * 180.02562 * 6 5 4 9 9 C 1.52996 * 109.47068 * 179.97438 * 8 6 5 10 10 C 1.53002 * 109.47026 * 179.97438 * 9 8 6 11 11 O 1.42901 * 109.47080 * 180.02562 * 10 9 8 12 12 C 1.35948 * 116.99947 * 180.02562 * 11 10 9 13 13 C 1.38709 * 120.02817 * 359.71834 * 12 11 10 14 14 C 1.38151 * 119.96613 * 179.79056 * 13 12 11 15 15 C 1.38449 * 120.03082 * 0.48925 * 14 13 12 16 16 F 1.35105 * 119.97161 * 179.72289 * 15 14 13 17 17 C 1.38452 * 120.05984 * 359.74399 * 15 14 13 18 18 C 1.38147 * 120.03544 * 0.02562 * 17 15 14 19 19 N 1.46499 * 109.47163 * 120.00165 * 2 1 3 20 20 C 1.46500 * 120.00027 * 60.00348 * 19 2 1 21 21 C 1.36936 * 119.99665 * 239.99868 * 19 2 1 22 22 H 1.07999 * 120.00417 * 23.11864 * 21 19 2 23 23 C 1.38813 * 119.99639 * 203.12223 * 21 19 2 24 24 N 1.31619 * 120.00088 * 11.68578 * 23 21 19 25 25 Si 1.86797 * 120.00185 * 191.68935 * 23 21 19 26 26 H 1.48493 * 109.47542 * 89.99810 * 25 23 21 27 27 H 1.48504 * 109.47421 * 209.99818 * 25 23 21 28 28 H 1.48504 * 109.46869 * 329.99641 * 25 23 21 29 29 H 1.08992 * 109.47427 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47550 * 59.99369 * 1 2 3 31 31 H 1.09005 * 109.46948 * 299.99839 * 1 2 3 32 32 H 1.08999 * 109.47454 * 304.99739 * 4 2 1 33 33 H 1.09008 * 109.47123 * 65.00088 * 4 2 1 34 34 H 0.97002 * 120.00065 * 0.02562 * 5 4 2 35 35 H 1.08999 * 109.46612 * 299.99875 * 8 6 5 36 36 H 1.08994 * 109.47228 * 59.99595 * 8 6 5 37 37 H 1.08999 * 109.47454 * 299.99546 * 9 8 6 38 38 H 1.09008 * 109.47123 * 59.99895 * 9 8 6 39 39 H 1.08999 * 109.46881 * 300.00200 * 10 9 8 40 40 H 1.08994 * 109.47002 * 59.99945 * 10 9 8 41 41 H 1.07996 * 120.01621 * 0.02562 * 13 12 11 42 42 H 1.07998 * 119.98268 * 180.20795 * 14 13 12 43 43 H 1.08007 * 119.98690 * 180.02562 * 17 15 14 44 44 H 1.07999 * 120.02197 * 179.97438 * 18 17 15 45 45 H 1.08993 * 109.47477 * 93.93311 * 20 19 2 46 46 H 1.08999 * 109.47020 * 213.93589 * 20 19 2 47 47 H 1.09003 * 109.46756 * 333.93087 * 20 19 2 48 48 H 0.97001 * 120.00297 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 3.5000 -0.8263 -1.1907 6 6 4.1730 -1.4281 -2.1914 7 8 3.5698 -1.8831 -3.1401 8 6 5.6749 -1.5367 -2.1308 9 6 6.1848 -2.2578 -3.3802 10 6 7.7097 -2.3675 -3.3190 11 8 8.1860 -3.0405 -4.4862 12 6 9.5294 -3.2220 -4.5889 13 6 10.3711 -2.7566 -3.5895 14 6 11.7357 -2.9456 -3.6931 15 6 12.2640 -3.5903 -4.7986 16 9 13.5992 -3.7696 -4.9013 17 6 11.4253 -4.0511 -5.7992 18 6 10.0599 -3.8677 -5.6960 19 7 2.0183 -0.6906 1.1961 20 6 1.6645 -2.0932 1.4279 21 6 2.8056 -0.0251 2.0975 22 1 2.7707 1.0529 2.1525 23 6 3.6487 -0.7361 2.9404 24 7 3.8673 -2.0162 2.7259 25 14 4.4729 0.1237 4.3794 26 1 3.6016 0.0284 5.5781 27 1 5.7777 -0.5263 4.6631 28 1 4.6949 1.5525 4.0411 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 0.5138 0.8900 32 1 1.6053 -1.7197 -1.2952 33 1 1.7515 -0.1581 -2.1370 34 1 3.9823 -0.4627 -0.4317 35 1 6.1097 -0.5383 -2.0842 36 1 5.9629 -2.1003 -1.2435 37 1 5.7500 -3.2562 -3.4264 38 1 5.8967 -1.6945 -4.2679 39 1 8.1442 -1.3689 -3.2730 40 1 7.9981 -2.9305 -2.4314 41 1 9.9597 -2.2500 -2.7290 42 1 12.3911 -2.5863 -2.9135 43 1 11.8386 -4.5543 -6.6609 44 1 9.4060 -4.2269 -6.4768 45 1 2.4507 -2.7364 1.0328 46 1 1.5554 -2.2683 2.4982 47 1 0.7239 -2.3185 0.9252 48 1 4.4567 -2.5130 3.3147 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725172520.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:05 Heat of formation + Delta-G solvation = -100.136124 kcal Electronic energy + Delta-G solvation = -28365.575100 eV Core-core repulsion = 24142.121786 eV Total energy + Delta-G solvation = -4223.453313 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -49.83104 -41.14839 -40.62928 -38.49393 -38.24624 -35.34021 -34.78128 -33.69503 -32.24532 -31.13194 -30.46849 -28.65250 -27.97821 -26.58870 -24.91482 -24.34167 -23.34876 -22.39187 -21.19261 -20.75729 -19.31529 -18.80734 -18.43643 -17.93481 -17.46287 -17.39860 -17.09289 -16.80051 -16.57165 -16.28286 -15.78251 -15.70357 -15.37363 -14.84337 -14.81598 -14.58080 -14.47535 -14.29614 -14.02645 -13.81449 -13.61293 -13.53602 -13.27172 -13.11215 -13.03729 -12.78934 -12.59180 -12.45325 -12.43715 -12.25597 -12.20237 -12.05571 -11.74254 -11.71807 -11.53764 -11.45489 -10.82897 -10.57824 -10.19979 -9.85657 -9.12974 -8.73646 -7.74269 -5.23588 0.14993 0.18319 1.51094 1.55517 1.61019 1.75357 2.00370 2.53947 2.55460 2.60285 3.31526 3.39307 3.64811 3.68265 3.78960 3.81640 3.91799 4.04690 4.09740 4.11414 4.25363 4.36056 4.40709 4.42880 4.45186 4.63889 4.64485 4.67882 4.75125 4.86191 4.89330 4.90332 5.06042 5.10561 5.11388 5.13125 5.18490 5.25511 5.29792 5.32751 5.50776 5.67393 5.70097 5.74475 5.77698 6.35685 6.39080 6.75527 7.21617 7.38139 7.92581 8.38965 9.27038 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.012979 B = 0.002073 C = 0.001836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2156.879887 B =13503.085798 C =15249.239820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.157 3.843 3 H 0.075 0.925 4 C 0.114 3.886 5 N -0.704 5.704 6 C 0.505 3.495 7 O -0.597 6.597 8 C -0.129 4.129 9 C -0.092 4.092 10 C 0.060 3.940 11 O -0.326 6.326 12 C 0.110 3.890 13 C -0.185 4.185 14 C -0.114 4.114 15 C 0.037 3.963 16 F -0.150 7.150 17 C -0.111 4.111 18 C -0.133 4.133 19 N -0.601 5.601 20 C 0.182 3.818 21 C -0.257 4.257 22 H 0.073 0.927 23 C -0.041 4.041 24 N -0.929 5.929 25 Si 0.959 3.041 26 H -0.298 1.298 27 H -0.298 1.298 28 H -0.268 1.268 29 H 0.046 0.954 30 H 0.076 0.924 31 H 0.053 0.947 32 H 0.037 0.963 33 H 0.067 0.933 34 H 0.412 0.588 35 H 0.122 0.878 36 H 0.102 0.898 37 H 0.060 0.940 38 H 0.071 0.929 39 H 0.087 0.913 40 H 0.077 0.923 41 H 0.155 0.845 42 H 0.154 0.846 43 H 0.162 0.838 44 H 0.152 0.848 45 H 0.001 0.999 46 H 0.013 0.987 47 H 0.020 0.980 48 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.568 0.867 -13.501 17.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.049 3.951 3 H 0.093 0.907 4 C -0.012 4.012 5 N -0.353 5.353 6 C 0.293 3.707 7 O -0.479 6.479 8 C -0.168 4.168 9 C -0.130 4.130 10 C -0.014 4.014 11 O -0.240 6.240 12 C 0.064 3.936 13 C -0.204 4.204 14 C -0.133 4.133 15 C 0.018 3.982 16 F -0.129 7.129 17 C -0.129 4.129 18 C -0.152 4.152 19 N -0.325 5.325 20 C 0.037 3.963 21 C -0.387 4.387 22 H 0.091 0.909 23 C -0.237 4.237 24 N -0.575 5.575 25 Si 0.789 3.211 26 H -0.226 1.226 27 H -0.225 1.225 28 H -0.192 1.192 29 H 0.065 0.935 30 H 0.094 0.906 31 H 0.072 0.928 32 H 0.056 0.944 33 H 0.086 0.914 34 H 0.248 0.752 35 H 0.140 0.860 36 H 0.121 0.879 37 H 0.079 0.921 38 H 0.090 0.910 39 H 0.105 0.895 40 H 0.095 0.905 41 H 0.173 0.827 42 H 0.172 0.828 43 H 0.179 0.821 44 H 0.170 0.830 45 H 0.020 0.980 46 H 0.032 0.968 47 H 0.038 0.962 48 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 11.109 0.406 -14.178 18.016 hybrid contribution 0.815 0.114 1.641 1.835 sum 11.924 0.520 -12.537 17.310 Atomic orbital electron populations 1.22070 0.95361 1.01540 1.01974 1.20832 0.94086 0.95626 0.84516 0.90700 1.21819 0.80421 0.99893 0.99117 1.45949 1.08172 1.58167 1.23058 1.21083 0.91292 0.76769 0.81590 1.90630 1.71685 1.50233 1.35377 1.21471 0.90442 1.04725 1.00182 1.21065 0.92677 1.01508 0.97753 1.22939 0.94353 0.97757 0.86395 1.86064 1.19316 1.74402 1.44238 1.19320 0.82815 0.96152 0.95288 1.21385 0.93257 1.05000 1.00727 1.21183 0.95764 0.98712 0.97625 1.17831 0.77403 1.04919 0.98072 1.91471 1.30961 1.94016 1.96423 1.21176 0.92327 1.00166 0.99247 1.20529 0.94736 1.01863 0.98043 1.44056 1.57719 1.09260 1.21425 1.20404 0.93957 0.84903 0.97012 1.19486 1.15200 0.91447 1.12559 0.90940 1.25602 0.99024 0.96661 1.02408 1.70228 1.39896 1.08483 1.38891 0.85400 0.77129 0.78426 0.80163 1.22614 1.22538 1.19228 0.93483 0.90561 0.92793 0.94425 0.91435 0.75208 0.85995 0.87929 0.92143 0.90991 0.89533 0.90526 0.82742 0.82849 0.82084 0.83001 0.98036 0.96788 0.96209 0.94543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.49 9.18 71.98 0.66 -3.83 16 2 C 0.16 5.52 2.87 44.99 0.13 5.65 16 3 H 0.07 2.56 7.87 -2.39 -0.02 2.54 16 4 C 0.11 3.98 4.97 86.38 0.43 4.41 16 5 N -0.70 -24.88 5.39 -463.05 -2.49 -27.38 16 6 C 0.50 17.23 7.83 87.66 0.69 17.92 16 7 O -0.60 -24.21 15.98 -3.04 -0.05 -24.26 16 8 C -0.13 -3.16 5.70 29.85 0.17 -2.99 16 9 C -0.09 -2.18 4.87 30.59 0.15 -2.03 16 10 C 0.06 1.12 4.74 71.98 0.34 1.46 16 11 O -0.33 -7.19 10.14 -92.97 -0.94 -8.13 16 12 C 0.11 2.16 6.69 22.50 0.15 2.31 16 13 C -0.19 -3.14 9.04 22.36 0.20 -2.93 16 14 C -0.11 -1.88 10.02 22.30 0.22 -1.66 16 15 C 0.04 0.67 7.30 22.37 0.16 0.83 16 16 F -0.15 -2.94 17.27 44.97 0.78 -2.17 16 17 C -0.11 -1.74 10.02 22.30 0.22 -1.52 16 18 C -0.13 -2.30 9.99 22.36 0.22 -2.07 16 19 N -0.60 -26.41 2.29 -702.80 -1.61 -28.02 16 20 C 0.18 8.50 8.11 127.77 1.04 9.54 16 21 C -0.26 -12.32 9.32 84.03 0.78 -11.53 16 22 H 0.07 3.37 7.82 -2.91 -0.02 3.35 16 23 C -0.04 -2.05 5.12 84.86 0.43 -1.62 16 24 N -0.93 -49.74 10.65 21.65 0.23 -49.51 16 25 Si 0.96 41.27 29.57 68.60 2.03 43.30 16 26 H -0.30 -13.23 7.11 99.48 0.71 -12.52 16 27 H -0.30 -13.09 7.11 99.48 0.71 -12.39 16 28 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 29 H 0.05 1.45 6.66 -2.39 -0.02 1.43 16 30 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 32 H 0.04 1.46 7.84 -2.39 -0.02 1.44 16 33 H 0.07 2.16 8.14 -2.38 -0.02 2.14 16 34 H 0.41 15.17 7.89 -92.71 -0.73 14.43 16 35 H 0.12 2.29 8.14 -2.39 -0.02 2.27 16 36 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16 37 H 0.06 1.68 8.10 -2.39 -0.02 1.66 16 38 H 0.07 1.81 8.10 -2.38 -0.02 1.80 16 39 H 0.09 1.24 7.65 -2.39 -0.02 1.22 16 40 H 0.08 1.28 7.67 -2.39 -0.02 1.26 16 41 H 0.16 2.05 6.30 -2.91 -0.02 2.03 16 42 H 0.15 1.93 8.06 -2.91 -0.02 1.90 16 43 H 0.16 1.75 8.06 -2.91 -0.02 1.73 16 44 H 0.15 2.18 8.06 -2.91 -0.02 2.16 16 45 H 0.00 0.07 7.41 -2.39 -0.02 0.05 16 46 H 0.01 0.70 7.23 -2.39 -0.02 0.68 16 47 H 0.02 0.81 6.43 -2.39 -0.02 0.80 16 48 H 0.25 13.04 8.31 -92.71 -0.77 12.27 16 Total: -1.00 -62.34 398.52 4.18 -58.17 By element: Atomic # 1 Polarization: 25.83 SS G_CDS: 0.23 Total: 26.06 kcal Atomic # 6 Polarization: 5.92 SS G_CDS: 6.00 Total: 11.93 kcal Atomic # 7 Polarization: -101.03 SS G_CDS: -3.87 Total: -104.90 kcal Atomic # 8 Polarization: -31.40 SS G_CDS: -0.99 Total: -32.39 kcal Atomic # 9 Polarization: -2.94 SS G_CDS: 0.78 Total: -2.17 kcal Atomic # 14 Polarization: 41.27 SS G_CDS: 2.03 Total: 43.30 kcal Total: -62.34 4.18 -58.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725172520.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.971 kcal (2) G-P(sol) polarization free energy of solvation -62.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds