Wall clock time and date at job start Tue Mar 31 2020 22:07:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50703 * 1
3 3 N 1.30371 * 125.96473 * 2 1
4 4 N 1.39917 * 109.02297 * 180.27913 * 3 2 1
5 5 C 1.46503 * 125.74638 * 179.75892 * 4 3 2
6 6 C 1.34421 * 108.51342 * 359.72900 * 4 3 2
7 7 F 1.35089 * 126.34390 * 180.02562 * 6 4 3
8 8 C 1.38505 * 107.30620 * 0.02562 * 6 4 3
9 9 C 1.47174 * 126.45289 * 179.97438 * 8 6 4
10 10 O 1.21636 * 119.99982 * 90.01898 * 9 8 6
11 11 N 1.34778 * 119.99566 * 270.01852 * 9 8 6
12 12 C 1.46924 * 120.62737 * 180.02562 * 11 9 8
13 13 C 1.53195 * 108.77304 * 233.58908 * 12 11 9
14 14 C 1.53045 * 109.31295 * 305.36079 * 13 12 11
15 15 C 1.52992 * 109.46210 * 181.38497 * 14 13 12
16 16 H 1.08998 * 109.46862 * 59.98235 * 15 14 13
17 17 C 1.52997 * 109.47482 * 299.97670 * 15 14 13
18 18 N 1.46506 * 109.46999 * 179.97438 * 15 14 13
19 19 C 1.36936 * 119.99838 * 205.00251 * 18 15 14
20 20 H 1.07999 * 120.00085 * 359.97438 * 19 18 15
21 21 C 1.38815 * 119.99824 * 180.02562 * 19 18 15
22 22 N 1.31616 * 119.99954 * 359.97438 * 21 19 18
23 23 Si 1.86794 * 119.99939 * 180.02562 * 21 19 18
24 24 H 1.48503 * 109.47287 * 59.99716 * 23 21 19
25 25 H 1.48506 * 109.47344 * 179.97438 * 23 21 19
26 26 H 1.48500 * 109.47040 * 299.99712 * 23 21 19
27 27 C 1.53049 * 109.52175 * 61.37157 * 14 13 12
28 28 C 1.46923 * 120.63258 * 359.97438 * 11 9 8
29 29 H 1.08998 * 109.47570 * 270.15501 * 1 2 3
30 30 H 1.09001 * 109.47045 * 30.16140 * 1 2 3
31 31 H 1.09002 * 109.46512 * 150.15304 * 1 2 3
32 32 H 1.09003 * 109.46957 * 269.97129 * 5 4 3
33 33 H 1.08996 * 109.47141 * 29.96880 * 5 4 3
34 34 H 1.08994 * 109.47118 * 149.97380 * 5 4 3
35 35 H 1.09000 * 109.59217 * 113.79934 * 12 11 9
36 36 H 1.08996 * 109.70505 * 353.43822 * 12 11 9
37 37 H 1.09003 * 109.49560 * 185.41713 * 13 12 11
38 38 H 1.08997 * 109.53049 * 65.32859 * 13 12 11
39 39 H 1.09000 * 109.45986 * 301.36470 * 14 13 12
40 40 H 1.09002 * 109.47153 * 59.99783 * 17 15 14
41 41 H 1.09001 * 109.46832 * 299.99974 * 17 15 14
42 42 H 1.09004 * 109.47261 * 179.97438 * 17 15 14
43 43 H 0.96992 * 120.00062 * 25.00521 * 18 15 14
44 44 H 0.97001 * 119.99945 * 180.02562 * 22 21 19
45 45 H 1.09000 * 109.49264 * 58.58408 * 27 14 13
46 46 H 1.09005 * 109.49254 * 178.67752 * 27 14 13
47 47 H 1.08996 * 109.58821 * 246.20018 * 28 11 9
48 48 H 1.08998 * 109.58700 * 6.48712 * 28 11 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2727 1.0552 0.0000
4 7 3.6111 0.6475 -0.0064
5 6 4.7763 1.5355 -0.0135
6 6 3.6480 -0.6962 -0.0044
7 9 4.7577 -1.4666 -0.0085
8 6 2.3375 -1.1444 0.0027
9 6 1.8931 -2.5474 0.0067
10 8 1.7144 -3.1258 1.0617
11 7 1.6842 -3.1913 -1.1588
12 6 1.2399 -4.5917 -1.1710
13 6 2.2026 -5.4067 -2.0405
14 6 2.2985 -4.7656 -3.4269
15 6 3.2324 -5.5964 -4.3092
16 1 2.8386 -6.6084 -4.4029
17 6 4.6232 -5.6470 -3.6738
18 7 3.3238 -4.9832 -5.6366
19 6 3.6488 -5.7496 -6.7239
20 1 3.8381 -6.8059 -6.6028
21 6 3.7360 -5.1685 -7.9815
22 7 3.5059 -3.8810 -8.1289
23 14 4.1786 -6.2140 -9.4648
24 1 3.1655 -7.2864 -9.6346
25 1 4.2054 -5.3620 -10.6809
26 1 5.5163 -6.8249 -9.2584
27 6 2.8511 -3.3444 -3.2961
28 6 1.8952 -2.5058 -2.4410
29 1 -0.3634 0.0028 1.0276
30 1 -0.3633 0.8885 -0.5163
31 1 -0.3632 -0.8914 -0.5115
32 1 5.0602 1.7541 -1.0429
33 1 4.5283 2.4644 0.5000
34 1 5.6072 1.0487 0.4970
35 1 0.2334 -4.6523 -1.5848
36 1 1.2418 -4.9868 -0.1552
37 1 1.8310 -6.4269 -2.1365
38 1 3.1891 -5.4208 -1.5772
39 1 1.3077 -4.7296 -3.8797
40 1 4.5552 -6.1032 -2.6862
41 1 5.0169 -4.6349 -3.5801
42 1 5.2884 -6.2393 -4.3022
43 1 3.1543 -4.0344 -5.7452
44 1 3.5664 -3.4750 -9.0078
45 1 3.8313 -3.3776 -2.8205
46 1 2.9413 -2.8966 -4.2858
47 1 0.9419 -2.3966 -2.9582
48 1 2.3289 -1.5219 -2.2624
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001732002509.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:07:09
Heat of formation + Delta-G solvation = 10.511568 kcal
Electronic energy + Delta-G solvation = -30625.482728 eV
Core-core repulsion = 26439.120210 eV
Total energy + Delta-G solvation = -4186.362518 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 338.186 amu
Computer time = 0.75 seconds
Orbital eigenvalues (eV)
-49.53059 -41.69950 -39.88864 -37.90375 -35.34653 -34.49848 -32.91598 -31.44669
-30.56334 -30.42277 -29.68249 -28.17138 -26.52219 -25.24679 -23.93932 -23.10535
-22.60242 -21.34699 -20.78304 -19.67542 -18.64803 -17.80139 -17.38065 -17.11417
-16.75080 -16.28383 -16.02831 -14.96444 -14.96068 -14.79469 -14.45544 -14.36197
-13.92645 -13.86916 -13.79510 -13.68163 -13.52679 -13.15539 -13.02614 -12.82915
-12.70516 -12.58538 -12.40837 -12.13989 -11.91843 -11.56231 -11.34353 -11.15859
-11.02743 -10.83054 -10.57326 -10.32981 -10.26137 -10.11755 -9.99764 -9.68676
-9.63249 -9.52885 -8.92797 -8.89180 -8.58198 -6.94298 -5.76333 -3.03889
1.10266 1.62721 1.99078 2.44948 3.07104 3.43781 3.48505 3.49072
3.55660 4.02266 4.45751 4.59137 4.61357 4.70672 4.79084 4.92282
4.94983 4.98851 5.10167 5.16230 5.25511 5.32407 5.42529 5.43797
5.52277 5.55544 5.57062 5.67934 5.83198 5.86376 5.99521 6.01894
6.04385 6.16536 6.23988 6.30074 6.33541 6.38878 6.51379 6.59919
6.70186 6.78515 6.94598 7.07552 7.17834 7.38411 7.70835 8.12703
8.43364 9.54296 10.13120 10.47642 11.46585
Molecular weight = 338.19amu
Principal moments of inertia in cm(-1)
A = 0.014563 B = 0.002971 C = 0.002775
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1922.238802 B = 9423.068754 C =10088.560050
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.078 4.078
2 C 0.131 3.869
3 N -0.270 5.270
4 N -0.374 5.374
5 C 0.092 3.908
6 C 0.294 3.706
7 F -0.086 7.086
8 C -0.284 4.284
9 C 0.599 3.401
10 O -0.538 6.538
11 N -0.595 5.595
12 C 0.113 3.887
13 C -0.129 4.129
14 C -0.089 4.089
15 C 0.178 3.822
16 H 0.046 0.954
17 C -0.167 4.167
18 N -0.724 5.724
19 C -0.236 4.236
20 H 0.069 0.931
21 C -0.014 4.014
22 N -0.935 5.935
23 Si 0.905 3.095
24 H -0.287 1.287
25 H -0.292 1.292
26 H -0.287 1.287
27 C -0.128 4.128
28 C 0.110 3.890
29 H 0.086 0.914
30 H 0.083 0.917
31 H 0.082 0.918
32 H 0.086 0.914
33 H 0.100 0.900
34 H 0.091 0.909
35 H 0.069 0.931
36 H 0.090 0.910
37 H 0.075 0.925
38 H 0.069 0.931
39 H 0.072 0.928
40 H 0.037 0.963
41 H 0.047 0.953
42 H 0.049 0.951
43 H 0.383 0.617
44 H 0.255 0.745
45 H 0.066 0.934
46 H 0.085 0.915
47 H 0.072 0.928
48 H 0.076 0.924
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.949 9.765 18.366 21.009
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.136 4.136
2 C -0.035 4.035
3 N -0.093 5.093
4 N -0.158 5.158
5 C -0.048 4.048
6 C 0.147 3.853
7 F -0.065 7.065
8 C -0.300 4.300
9 C 0.385 3.615
10 O -0.415 6.415
11 N -0.328 5.328
12 C -0.009 4.009
13 C -0.167 4.167
14 C -0.109 4.109
15 C 0.068 3.932
16 H 0.064 0.936
17 C -0.227 4.227
18 N -0.367 5.367
19 C -0.367 4.367
20 H 0.087 0.913
21 C -0.210 4.210
22 N -0.584 5.584
23 Si 0.736 3.264
24 H -0.213 1.213
25 H -0.218 1.218
26 H -0.214 1.214
27 C -0.166 4.166
28 C -0.012 4.012
29 H 0.105 0.895
30 H 0.102 0.898
31 H 0.101 0.899
32 H 0.105 0.895
33 H 0.119 0.881
34 H 0.110 0.890
35 H 0.087 0.913
36 H 0.108 0.892
37 H 0.094 0.906
38 H 0.088 0.912
39 H 0.090 0.910
40 H 0.056 0.944
41 H 0.066 0.934
42 H 0.068 0.932
43 H 0.218 0.782
44 H 0.064 0.936
45 H 0.085 0.915
46 H 0.104 0.896
47 H 0.090 0.910
48 H 0.094 0.906
Dipole moment (debyes) X Y Z Total
from point charges -2.789 10.648 18.774 21.763
hybrid contribution 0.924 -1.126 -1.097 1.823
sum -1.866 9.521 17.677 20.165
Atomic orbital electron populations
1.20318 0.85173 1.04168 1.03955 1.22180 0.97196 0.87948 0.96221
1.77306 0.84129 1.21130 1.26726 1.48670 1.07314 1.02601 1.57263
1.22094 0.83554 0.94577 1.04615 1.17776 0.83401 0.81852 1.02287
1.91677 1.49617 1.71516 1.93716 1.19608 0.90387 0.95667 1.24362
1.17057 0.76897 0.84021 0.83492 1.90774 1.52128 1.67629 1.30929
1.48096 1.65948 1.12938 1.05800 1.21677 0.97586 0.79909 1.01769
1.22022 1.00005 0.98993 0.95702 1.21391 1.00246 0.94680 0.94555
1.20191 0.92096 0.95215 0.85690 0.93590 1.22529 1.00488 1.00916
0.98721 1.42483 1.83707 1.09140 1.01335 1.19211 1.38808 0.92210
0.86475 0.91349 1.24701 1.02881 0.95907 0.97503 1.69637 1.56395
1.09657 1.22701 0.86299 0.78248 0.79179 0.82651 1.21331 1.21758
1.21382 1.21985 0.98461 0.95808 1.00325 1.21813 1.00297 0.95865
0.83269 0.89512 0.89773 0.89909 0.89523 0.88126 0.88997 0.91295
0.89169 0.90650 0.91194 0.90955 0.94374 0.93430 0.93196 0.78223
0.93560 0.91488 0.89646 0.90961 0.90561
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -0.65 10.28 36.01 0.37 -0.28 16
2 C 0.13 1.51 7.26 -82.01 -0.60 0.92 16
3 N -0.27 -3.16 12.49 33.91 0.42 -2.73 16
4 N -0.37 -4.01 3.98 -67.94 -0.27 -4.28 16
5 C 0.09 0.57 11.43 59.85 0.68 1.25 16
6 C 0.29 3.67 8.59 -16.32 -0.14 3.53 16
7 F -0.09 -1.09 17.31 2.25 0.04 -1.05 16
8 C -0.28 -3.73 3.87 -104.97 -0.41 -4.14 16
9 C 0.60 8.71 7.24 -12.63 -0.09 8.62 16
10 O -0.54 -9.36 16.52 5.25 0.09 -9.27 16
11 N -0.60 -7.82 2.97 -174.11 -0.52 -8.33 16
12 C 0.11 1.39 6.43 -3.71 -0.02 1.36 16
13 C -0.13 -1.67 4.97 -26.61 -0.13 -1.80 16
14 C -0.09 -1.37 2.14 -90.58 -0.19 -1.57 16
15 C 0.18 3.39 2.72 -67.93 -0.18 3.20 16
16 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16
17 C -0.17 -2.99 8.79 37.16 0.33 -2.66 16
18 N -0.72 -17.47 5.04 -53.43 -0.27 -17.74 16
19 C -0.24 -6.43 9.93 -15.06 -0.15 -6.57 16
20 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16
21 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16
22 N -0.94 -27.68 13.06 55.49 0.72 -26.95 16
23 Si 0.90 22.21 29.55 -169.99 -5.02 17.18 16
24 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16
25 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16
26 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16
27 C -0.13 -1.90 4.82 -26.59 -0.13 -2.03 16
28 C 0.11 1.39 6.34 -3.69 -0.02 1.37 16
29 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16
30 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16
31 H 0.08 0.68 8.01 -51.93 -0.42 0.26 16
32 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16
33 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16
34 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16
35 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16
36 H 0.09 1.16 7.01 -51.93 -0.36 0.79 16
37 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16
38 H 0.07 0.96 6.51 -51.93 -0.34 0.62 16
39 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16
40 H 0.04 0.59 6.46 -51.93 -0.34 0.25 16
41 H 0.05 0.86 6.46 -51.93 -0.34 0.53 16
42 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16
43 H 0.38 9.66 6.04 -40.82 -0.25 9.42 16
44 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16
45 H 0.07 1.04 6.51 -51.93 -0.34 0.70 16
46 H 0.09 1.45 6.46 -51.93 -0.34 1.11 16
47 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16
48 H 0.08 0.95 6.25 -51.93 -0.32 0.63 16
LS Contribution 387.89 15.07 5.85 5.85
Total: -1.00 -33.34 387.89 -6.97 -40.32
By element:
Atomic # 1 Polarization: 13.53 SS G_CDS: -7.23 Total: 6.31 kcal
Atomic # 6 Polarization: 1.49 SS G_CDS: -0.78 Total: 0.71 kcal
Atomic # 7 Polarization: -60.12 SS G_CDS: 0.09 Total: -60.03 kcal
Atomic # 8 Polarization: -9.36 SS G_CDS: 0.09 Total: -9.27 kcal
Atomic # 9 Polarization: -1.09 SS G_CDS: 0.04 Total: -1.05 kcal
Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.18 kcal
Total LS contribution 5.85 Total: 5.85 kcal
Total: -33.34 -6.97 -40.32 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001732002509.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 50.827 kcal
(2) G-P(sol) polarization free energy of solvation -33.343 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.484 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.972 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.315 kcal
(6) G-S(sol) free energy of system = (1) + (5) 10.512 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.75 seconds