Wall clock time and date at job start Tue Mar 31 2020 22:07:08
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50703 * 1
3 3 N 1.30371 * 125.96473 * 2 1
4 4 N 1.39917 * 109.02297 * 180.27913 * 3 2 1
5 5 C 1.46503 * 125.74638 * 179.75892 * 4 3 2
6 6 C 1.34421 * 108.51342 * 359.72900 * 4 3 2
7 7 F 1.35089 * 126.34390 * 180.02562 * 6 4 3
8 8 C 1.38505 * 107.30620 * 0.02562 * 6 4 3
9 9 C 1.47174 * 126.45289 * 179.97438 * 8 6 4
10 10 O 1.21636 * 119.99982 * 90.01898 * 9 8 6
11 11 N 1.34778 * 119.99566 * 270.01852 * 9 8 6
12 12 C 1.46924 * 120.62737 * 180.02562 * 11 9 8
13 13 C 1.53195 * 108.77304 * 233.58908 * 12 11 9
14 14 C 1.53045 * 109.31295 * 305.36079 * 13 12 11
15 15 C 1.52992 * 109.46210 * 181.38497 * 14 13 12
16 16 H 1.08998 * 109.46862 * 59.98235 * 15 14 13
17 17 C 1.52997 * 109.47482 * 299.97670 * 15 14 13
18 18 N 1.46506 * 109.46999 * 179.97438 * 15 14 13
19 19 C 1.36936 * 119.99838 * 205.00251 * 18 15 14
20 20 H 1.07999 * 120.00085 * 359.97438 * 19 18 15
21 21 C 1.38815 * 119.99824 * 180.02562 * 19 18 15
22 22 N 1.31616 * 119.99954 * 359.97438 * 21 19 18
23 23 Si 1.86794 * 119.99939 * 180.02562 * 21 19 18
24 24 H 1.48503 * 109.47287 * 59.99716 * 23 21 19
25 25 H 1.48506 * 109.47344 * 179.97438 * 23 21 19
26 26 H 1.48500 * 109.47040 * 299.99712 * 23 21 19
27 27 C 1.53049 * 109.52175 * 61.37157 * 14 13 12
28 28 C 1.46923 * 120.63258 * 359.97438 * 11 9 8
29 29 H 1.08998 * 109.47570 * 270.15501 * 1 2 3
30 30 H 1.09001 * 109.47045 * 30.16140 * 1 2 3
31 31 H 1.09002 * 109.46512 * 150.15304 * 1 2 3
32 32 H 1.09003 * 109.46957 * 269.97129 * 5 4 3
33 33 H 1.08996 * 109.47141 * 29.96880 * 5 4 3
34 34 H 1.08994 * 109.47118 * 149.97380 * 5 4 3
35 35 H 1.09000 * 109.59217 * 113.79934 * 12 11 9
36 36 H 1.08996 * 109.70505 * 353.43822 * 12 11 9
37 37 H 1.09003 * 109.49560 * 185.41713 * 13 12 11
38 38 H 1.08997 * 109.53049 * 65.32859 * 13 12 11
39 39 H 1.09000 * 109.45986 * 301.36470 * 14 13 12
40 40 H 1.09002 * 109.47153 * 59.99783 * 17 15 14
41 41 H 1.09001 * 109.46832 * 299.99974 * 17 15 14
42 42 H 1.09004 * 109.47261 * 179.97438 * 17 15 14
43 43 H 0.96992 * 120.00062 * 25.00521 * 18 15 14
44 44 H 0.97001 * 119.99945 * 180.02562 * 22 21 19
45 45 H 1.09000 * 109.49264 * 58.58408 * 27 14 13
46 46 H 1.09005 * 109.49254 * 178.67752 * 27 14 13
47 47 H 1.08996 * 109.58821 * 246.20018 * 28 11 9
48 48 H 1.08998 * 109.58700 * 6.48712 * 28 11 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2727 1.0552 0.0000
4 7 3.6111 0.6475 -0.0064
5 6 4.7763 1.5355 -0.0135
6 6 3.6480 -0.6962 -0.0044
7 9 4.7577 -1.4666 -0.0085
8 6 2.3375 -1.1444 0.0027
9 6 1.8931 -2.5474 0.0067
10 8 1.7144 -3.1258 1.0617
11 7 1.6842 -3.1913 -1.1588
12 6 1.2399 -4.5917 -1.1710
13 6 2.2026 -5.4067 -2.0405
14 6 2.2985 -4.7656 -3.4269
15 6 3.2324 -5.5964 -4.3092
16 1 2.8386 -6.6084 -4.4029
17 6 4.6232 -5.6470 -3.6738
18 7 3.3238 -4.9832 -5.6366
19 6 3.6488 -5.7496 -6.7239
20 1 3.8381 -6.8059 -6.6028
21 6 3.7360 -5.1685 -7.9815
22 7 3.5059 -3.8810 -8.1289
23 14 4.1786 -6.2140 -9.4648
24 1 3.1655 -7.2864 -9.6346
25 1 4.2054 -5.3620 -10.6809
26 1 5.5163 -6.8249 -9.2584
27 6 2.8511 -3.3444 -3.2961
28 6 1.8952 -2.5058 -2.4410
29 1 -0.3634 0.0028 1.0276
30 1 -0.3633 0.8885 -0.5163
31 1 -0.3632 -0.8914 -0.5115
32 1 5.0602 1.7541 -1.0429
33 1 4.5283 2.4644 0.5000
34 1 5.6072 1.0487 0.4970
35 1 0.2334 -4.6523 -1.5848
36 1 1.2418 -4.9868 -0.1552
37 1 1.8310 -6.4269 -2.1365
38 1 3.1891 -5.4208 -1.5772
39 1 1.3077 -4.7296 -3.8797
40 1 4.5552 -6.1032 -2.6862
41 1 5.0169 -4.6349 -3.5801
42 1 5.2884 -6.2393 -4.3022
43 1 3.1543 -4.0344 -5.7452
44 1 3.5664 -3.4750 -9.0078
45 1 3.8313 -3.3776 -2.8205
46 1 2.9413 -2.8966 -4.2858
47 1 0.9419 -2.3966 -2.9582
48 1 2.3289 -1.5219 -2.2624
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001732002509.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:07:08
Heat of formation + Delta-G solvation = -10.253019 kcal
Electronic energy + Delta-G solvation = -30626.383148 eV
Core-core repulsion = 26439.120210 eV
Total energy + Delta-G solvation = -4187.262938 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 338.186 amu
Computer time = 0.80 seconds
Orbital eigenvalues (eV)
-50.48731 -42.58335 -41.00250 -39.20706 -36.82740 -35.27523 -34.61815 -32.71403
-31.96149 -31.36511 -30.49241 -29.78179 -27.36775 -26.55776 -25.56423 -24.31805
-23.73954 -22.48073 -21.72589 -20.82500 -19.84972 -19.25644 -18.74613 -18.20515
-17.71357 -17.18476 -17.12982 -16.68583 -16.06795 -15.81046 -15.76326 -15.52635
-15.40711 -15.18108 -14.77828 -14.51574 -14.41333 -14.28886 -14.19997 -14.04731
-13.72535 -13.61158 -13.29683 -13.13135 -13.00215 -12.96791 -12.87764 -12.74715
-12.63392 -12.19166 -12.05676 -11.97955 -11.76108 -11.59362 -11.28071 -11.16798
-11.01472 -10.85803 -10.44214 -9.84496 -9.70187 -8.94832 -7.90354 -5.16675
0.19794 0.85593 1.11113 1.35753 1.48638 1.50425 1.56353 2.03043
2.59009 2.72481 3.19478 3.43003 3.61572 3.73248 3.77834 3.82904
3.94237 4.07733 4.15671 4.21483 4.27870 4.28170 4.33612 4.39582
4.55387 4.56619 4.66881 4.71651 4.73914 4.75372 4.80585 4.87020
4.89160 4.96091 5.01332 5.09181 5.13734 5.26169 5.30861 5.33874
5.43679 5.54506 5.58784 5.59998 5.72011 6.22349 6.29794 6.33139
7.02845 7.39610 8.18258 8.41354 9.32932
Molecular weight = 338.19amu
Principal moments of inertia in cm(-1)
A = 0.014563 B = 0.002971 C = 0.002775
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1922.238802 B = 9423.068754 C =10088.560050
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.078 4.078
2 C 0.129 3.871
3 N -0.280 5.280
4 N -0.369 5.369
5 C 0.080 3.920
6 C 0.284 3.716
7 F -0.091 7.091
8 C -0.306 4.306
9 C 0.602 3.398
10 O -0.571 6.571
11 N -0.591 5.591
12 C 0.113 3.887
13 C -0.119 4.119
14 C -0.079 4.079
15 C 0.172 3.828
16 H 0.042 0.958
17 C -0.156 4.156
18 N -0.735 5.735
19 C -0.236 4.236
20 H 0.071 0.929
21 C -0.074 4.074
22 N -0.968 5.968
23 Si 0.966 3.034
24 H -0.279 1.279
25 H -0.297 1.297
26 H -0.282 1.282
27 C -0.120 4.120
28 C 0.120 3.880
29 H 0.096 0.904
30 H 0.100 0.900
31 H 0.084 0.916
32 H 0.098 0.902
33 H 0.117 0.883
34 H 0.106 0.894
35 H 0.088 0.912
36 H 0.088 0.912
37 H 0.092 0.908
38 H 0.064 0.936
39 H 0.069 0.931
40 H 0.066 0.934
41 H 0.041 0.959
42 H 0.029 0.971
43 H 0.375 0.625
44 H 0.249 0.751
45 H 0.059 0.941
46 H 0.062 0.938
47 H 0.087 0.913
48 H 0.080 0.920
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.396 9.776 19.135 21.755
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.136 4.136
2 C -0.037 4.037
3 N -0.103 5.103
4 N -0.153 5.153
5 C -0.058 4.058
6 C 0.136 3.864
7 F -0.070 7.070
8 C -0.322 4.322
9 C 0.389 3.611
10 O -0.451 6.451
11 N -0.322 5.322
12 C -0.008 4.008
13 C -0.157 4.157
14 C -0.098 4.098
15 C 0.064 3.936
16 H 0.060 0.940
17 C -0.216 4.216
18 N -0.376 5.376
19 C -0.368 4.368
20 H 0.089 0.911
21 C -0.266 4.266
22 N -0.619 5.619
23 Si 0.796 3.204
24 H -0.205 1.205
25 H -0.223 1.223
26 H -0.209 1.209
27 C -0.158 4.158
28 C -0.002 4.002
29 H 0.114 0.886
30 H 0.118 0.882
31 H 0.103 0.897
32 H 0.116 0.884
33 H 0.136 0.864
34 H 0.125 0.875
35 H 0.106 0.894
36 H 0.107 0.893
37 H 0.110 0.890
38 H 0.082 0.918
39 H 0.088 0.912
40 H 0.085 0.915
41 H 0.060 0.940
42 H 0.048 0.952
43 H 0.208 0.792
44 H 0.058 0.942
45 H 0.077 0.923
46 H 0.081 0.919
47 H 0.105 0.895
48 H 0.098 0.902
Dipole moment (debyes) X Y Z Total
from point charges -3.226 10.644 19.565 22.505
hybrid contribution 1.108 -1.130 -1.275 2.033
sum -2.118 9.514 18.290 20.725
Atomic orbital electron populations
1.20443 0.83300 1.05030 1.04814 1.22596 0.98397 0.87181 0.95516
1.77281 0.84621 1.21329 1.27079 1.49022 1.07988 1.02373 1.55907
1.22494 0.82641 0.94778 1.05911 1.17872 0.83176 0.82694 1.02707
1.91658 1.49777 1.71789 1.93806 1.19652 0.91134 0.95433 1.25964
1.17223 0.76214 0.84463 0.83180 1.90751 1.53759 1.68546 1.32017
1.48131 1.65282 1.13266 1.05568 1.21745 0.98267 0.79236 1.01593
1.21941 1.00128 0.99819 0.93855 1.21249 0.98940 0.94439 0.95199
1.20418 0.93529 0.95347 0.84313 0.93973 1.22382 0.99028 1.00475
0.99707 1.42674 1.83555 1.08741 1.02650 1.19572 1.37167 0.92592
0.87503 0.91097 1.25431 1.04038 0.97018 1.00127 1.69785 1.58269
1.11121 1.22749 0.85322 0.78138 0.77699 0.79277 1.20538 1.22309
1.20862 1.21854 0.98737 0.95841 0.99407 1.21722 1.00384 0.95413
0.82701 0.88591 0.88167 0.89740 0.88355 0.86405 0.87517 0.89371
0.89333 0.88978 0.91753 0.91227 0.91474 0.93986 0.95212 0.79157
0.94196 0.92270 0.91933 0.89491 0.90209
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -1.18 10.28 71.24 0.73 -0.44 16
2 C 0.13 2.82 7.26 43.55 0.32 3.14 16
3 N -0.28 -6.16 12.49 -46.64 -0.58 -6.75 16
4 N -0.37 -7.45 3.98 -368.86 -1.47 -8.92 16
5 C 0.08 0.86 11.43 127.77 1.46 2.32 16
6 C 0.28 6.89 8.59 84.36 0.72 7.62 16
7 F -0.09 -2.27 17.31 44.97 0.78 -1.49 16
8 C -0.31 -7.79 3.87 -20.09 -0.08 -7.86 16
9 C 0.60 16.99 7.24 86.59 0.63 17.62 16
10 O -0.57 -19.58 16.52 -4.14 -0.07 -19.65 16
11 N -0.59 -14.69 2.97 -823.00 -2.45 -17.14 16
12 C 0.11 2.56 6.43 86.36 0.56 3.12 16
13 C -0.12 -2.85 4.97 30.67 0.15 -2.70 16
14 C -0.08 -2.34 2.14 -10.76 -0.02 -2.36 16
15 C 0.17 6.44 2.72 44.99 0.12 6.57 16
16 H 0.04 1.62 8.08 -2.39 -0.02 1.60 16
17 C -0.16 -5.49 8.79 71.98 0.63 -4.85 16
18 N -0.73 -35.63 5.04 -322.95 -1.63 -37.25 16
19 C -0.24 -12.89 9.93 84.03 0.83 -12.05 16
20 H 0.07 3.75 7.83 -2.91 -0.02 3.73 16
21 C -0.07 -4.18 5.50 84.86 0.47 -3.71 16
22 N -0.97 -58.08 13.06 21.65 0.28 -57.80 16
23 Si 0.97 45.79 29.55 68.60 2.03 47.82 16
24 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16
25 H -0.30 -14.20 7.11 99.48 0.71 -13.50 16
26 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16
27 C -0.12 -3.52 4.82 30.69 0.15 -3.37 16
28 C 0.12 2.90 6.34 86.38 0.55 3.45 16
29 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16
30 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16
31 H 0.08 1.25 8.01 -2.39 -0.02 1.23 16
32 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16
33 H 0.12 0.86 8.14 -2.39 -0.02 0.84 16
34 H 0.11 0.82 8.14 -2.39 -0.02 0.81 16
35 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16
36 H 0.09 2.11 7.01 -2.39 -0.02 2.10 16
37 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16
38 H 0.06 1.63 6.51 -2.39 -0.02 1.62 16
39 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16
40 H 0.07 1.95 6.46 -2.39 -0.02 1.94 16
41 H 0.04 1.50 6.46 -2.39 -0.02 1.49 16
42 H 0.03 1.13 8.14 -2.38 -0.02 1.12 16
43 H 0.37 19.25 6.04 -92.71 -0.56 18.69 16
44 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16
45 H 0.06 1.82 6.51 -2.39 -0.02 1.80 16
46 H 0.06 2.15 6.46 -2.38 -0.02 2.13 16
47 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16
48 H 0.08 1.91 6.25 -2.39 -0.01 1.90 16
Total: -1.00 -71.45 387.89 4.54 -66.91
By element:
Atomic # 1 Polarization: 27.36 SS G_CDS: 0.43 Total: 27.79 kcal
Atomic # 6 Polarization: -0.74 SS G_CDS: 7.22 Total: 6.48 kcal
Atomic # 7 Polarization: -122.01 SS G_CDS: -5.84 Total: -127.86 kcal
Atomic # 8 Polarization: -19.58 SS G_CDS: -0.07 Total: -19.65 kcal
Atomic # 9 Polarization: -2.27 SS G_CDS: 0.78 Total: -1.49 kcal
Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.82 kcal
Total: -71.45 4.54 -66.91 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001732002509.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 56.661 kcal
(2) G-P(sol) polarization free energy of solvation -71.453 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.792 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.539 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.914 kcal
(6) G-S(sol) free energy of system = (1) + (5) -10.253 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.80 seconds