Wall clock time and date at job start Tue Mar 31 2020 21:09:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47289 * 2 1 4 4 C 1.52997 * 109.47232 * 119.99925 * 2 1 3 5 5 N 1.46510 * 109.47089 * 175.00079 * 4 2 1 6 6 C 1.36935 * 119.99877 * 179.97438 * 5 4 2 7 7 H 1.08000 * 119.99830 * 0.02562 * 6 5 4 8 8 C 1.38808 * 119.99865 * 179.97438 * 6 5 4 9 9 N 1.31618 * 120.00351 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99891 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47256 * 90.00250 * 10 8 6 12 12 H 1.48504 * 109.46790 * 210.00015 * 10 8 6 13 13 H 1.48502 * 109.47224 * 329.99889 * 10 8 6 14 14 N 1.46506 * 109.47289 * 239.99872 * 2 1 3 15 15 C 1.46499 * 119.99936 * 299.99999 * 14 2 1 16 16 C 1.34773 * 119.99969 * 119.71964 * 14 2 1 17 17 O 1.21281 * 120.00220 * 0.02562 * 16 14 2 18 18 C 1.50706 * 120.00080 * 180.02562 * 16 14 2 19 19 C 1.52992 * 109.47274 * 180.02562 * 18 16 14 20 20 C 1.52996 * 109.47231 * 180.02562 * 19 18 16 21 21 O 1.42901 * 109.47396 * 179.97438 * 20 19 18 22 22 C 1.35949 * 117.00145 * 180.02562 * 21 20 19 23 23 C 1.38704 * 120.02817 * 359.72247 * 22 21 20 24 24 C 1.38151 * 119.96848 * 179.79263 * 23 22 21 25 25 C 1.38452 * 120.03015 * 0.48659 * 24 23 22 26 26 F 1.35101 * 119.97299 * 179.72113 * 25 24 23 27 27 C 1.38456 * 120.05748 * 359.74645 * 25 24 23 28 28 C 1.38151 * 120.03281 * 0.02562 * 27 25 24 29 29 H 1.09001 * 109.46832 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47153 * 300.00084 * 1 2 3 31 31 H 1.08996 * 109.46952 * 60.00255 * 1 2 3 32 32 H 1.09001 * 109.46992 * 294.99548 * 4 2 1 33 33 H 1.09002 * 109.47223 * 55.00179 * 4 2 1 34 34 H 0.96998 * 119.99795 * 359.97438 * 5 4 2 35 35 H 0.96996 * 120.00415 * 180.02562 * 9 8 6 36 36 H 1.09003 * 109.47269 * 89.99349 * 15 14 2 37 37 H 1.08994 * 109.47173 * 210.00167 * 15 14 2 38 38 H 1.09005 * 109.47077 * 330.00338 * 15 14 2 39 39 H 1.09004 * 109.46762 * 300.00389 * 18 16 14 40 40 H 1.08998 * 109.46924 * 59.99727 * 18 16 14 41 41 H 1.09004 * 109.47116 * 299.99649 * 19 18 16 42 42 H 1.08993 * 109.47352 * 59.99893 * 19 18 16 43 43 H 1.08999 * 109.47343 * 300.00090 * 20 19 18 44 44 H 1.09010 * 109.47369 * 59.99437 * 20 19 18 45 45 H 1.08007 * 120.01933 * 0.02562 * 23 22 21 46 46 H 1.08008 * 119.98738 * 180.20380 * 24 23 22 47 47 H 1.08003 * 119.98299 * 180.02562 * 27 25 24 48 48 H 1.07994 * 120.01262 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5001 -0.8263 1.1905 6 6 4.1840 -1.4378 2.2072 7 1 3.6469 -1.8430 3.0520 8 6 5.5673 -1.5379 2.1513 9 7 6.2218 -1.0446 1.1214 10 14 6.5001 -2.3727 3.5378 11 1 6.6318 -3.8222 3.2434 12 1 7.8508 -1.7678 3.6602 13 1 5.7594 -2.1917 4.8121 14 7 2.0184 -0.6907 -1.1962 15 6 1.6645 -2.0932 -1.4280 16 6 2.7885 -0.0340 -2.0862 17 8 3.0777 1.1284 -1.8966 18 6 3.2905 -0.7443 -3.3169 19 6 4.1353 0.2191 -4.1529 20 6 4.6443 -0.5018 -5.4027 21 8 5.4329 0.3982 -6.1838 22 6 5.9642 -0.0880 -7.3369 23 6 5.7355 -1.4056 -7.7050 24 6 6.2724 -1.8973 -8.8791 25 6 7.0468 -1.0783 -9.6832 26 9 7.5759 -1.5619 -10.8283 27 6 7.2798 0.2358 -9.3145 28 6 6.7402 0.7313 -8.1432 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.7517 -0.1582 2.1369 33 1 1.6054 -1.7198 1.2951 34 1 3.9824 -0.4627 0.4315 35 1 7.1884 -1.1148 1.0822 36 1 0.7375 -2.1445 -1.9992 37 1 2.4629 -2.5819 -1.9862 38 1 1.5295 -2.5969 -0.4707 39 1 3.8999 -1.5981 -3.0205 40 1 2.4425 -1.0909 -3.9076 41 1 3.5262 1.0731 -4.4493 42 1 4.9832 0.5652 -3.5620 43 1 5.2533 -1.3560 -5.1068 44 1 3.7960 -0.8477 -5.9935 45 1 5.1349 -2.0460 -7.0759 46 1 6.0919 -2.9223 -9.1677 47 1 7.8837 0.8737 -9.9428 48 1 6.9225 1.7562 -7.8557 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732433679.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:09:11 Heat of formation + Delta-G solvation = -85.799944 kcal Electronic energy + Delta-G solvation = -28605.713452 eV Core-core repulsion = 24382.881802 eV Total energy + Delta-G solvation = -4222.831650 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.06654 -40.36936 -39.73613 -37.60115 -36.46256 -34.06415 -33.76120 -31.88264 -31.52278 -30.12920 -29.62657 -27.26720 -26.60478 -25.61708 -23.84211 -22.85038 -22.49666 -21.75282 -20.51847 -18.81741 -18.39445 -17.62632 -17.12733 -17.07785 -16.59977 -16.56962 -15.79569 -15.72616 -15.38055 -15.01254 -14.73296 -14.38519 -14.05029 -13.93531 -13.62429 -13.53060 -13.22924 -13.22581 -12.87256 -12.82900 -12.52215 -12.33428 -12.24705 -12.12875 -11.90236 -11.85975 -11.56332 -11.46369 -11.28456 -10.97941 -10.85250 -10.78043 -10.64829 -10.45703 -10.05785 -9.70646 -9.51520 -9.41305 -8.87769 -8.36672 -8.26015 -6.90693 -5.74347 -3.03657 0.83495 0.92775 2.82608 3.01319 3.27101 3.39722 3.42610 3.47938 3.50031 4.02409 4.35340 4.45201 4.57876 4.65014 4.77091 4.79224 4.91838 4.97902 5.09408 5.16704 5.24701 5.31803 5.34944 5.39522 5.41747 5.54024 5.55645 5.59027 5.63203 5.67717 5.80051 5.83683 5.91193 5.93263 6.03086 6.08407 6.10256 6.18511 6.26544 6.36660 6.42164 6.50665 6.72086 6.99176 7.13453 7.69183 7.74854 8.43334 8.55871 9.54893 10.13535 10.49092 11.47751 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011307 B = 0.002213 C = 0.001957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2475.692261 B =12647.315416 C =14302.297791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.125 3.875 3 H 0.100 0.900 4 C 0.143 3.857 5 N -0.728 5.728 6 C -0.241 4.241 7 H 0.069 0.931 8 C -0.013 4.013 9 N -0.929 5.929 10 Si 0.906 3.094 11 H -0.291 1.291 12 H -0.291 1.291 13 H -0.282 1.282 14 N -0.598 5.598 15 C 0.082 3.918 16 C 0.519 3.481 17 O -0.539 6.539 18 C -0.134 4.134 19 C -0.104 4.104 20 C 0.059 3.941 21 O -0.307 6.307 22 C 0.129 3.871 23 C -0.183 4.183 24 C -0.112 4.112 25 C 0.052 3.948 26 F -0.144 7.144 27 C -0.113 4.113 28 C -0.126 4.126 29 H 0.056 0.944 30 H 0.066 0.934 31 H 0.054 0.946 32 H 0.028 0.972 33 H 0.020 0.980 34 H 0.386 0.614 35 H 0.254 0.746 36 H 0.047 0.953 37 H 0.068 0.932 38 H 0.077 0.923 39 H 0.099 0.901 40 H 0.090 0.910 41 H 0.080 0.920 42 H 0.088 0.912 43 H 0.067 0.933 44 H 0.063 0.937 45 H 0.139 0.861 46 H 0.137 0.863 47 H 0.141 0.859 48 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.257 -1.732 -20.053 21.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.021 3.979 3 H 0.118 0.882 4 C 0.015 3.985 5 N -0.372 5.372 6 C -0.372 4.372 7 H 0.087 0.913 8 C -0.209 4.209 9 N -0.577 5.577 10 Si 0.737 3.263 11 H -0.218 1.218 12 H -0.218 1.218 13 H -0.208 1.208 14 N -0.331 5.331 15 C -0.061 4.061 16 C 0.307 3.693 17 O -0.416 6.416 18 C -0.174 4.174 19 C -0.142 4.142 20 C -0.016 4.016 21 O -0.220 6.220 22 C 0.082 3.918 23 C -0.202 4.202 24 C -0.130 4.130 25 C 0.033 3.967 26 F -0.122 7.122 27 C -0.132 4.132 28 C -0.144 4.144 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.073 0.927 32 H 0.045 0.955 33 H 0.038 0.962 34 H 0.220 0.780 35 H 0.064 0.936 36 H 0.066 0.934 37 H 0.087 0.913 38 H 0.096 0.904 39 H 0.118 0.882 40 H 0.108 0.892 41 H 0.098 0.902 42 H 0.107 0.893 43 H 0.085 0.915 44 H 0.081 0.919 45 H 0.157 0.843 46 H 0.155 0.845 47 H 0.159 0.841 48 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -7.035 -1.020 -19.729 20.971 hybrid contribution 0.771 -0.946 0.410 1.287 sum -6.264 -1.966 -19.319 20.404 Atomic orbital electron populations 1.22045 0.95245 1.01973 1.01977 1.21378 0.93186 0.98569 0.84721 0.88225 1.21003 0.87132 0.96703 0.93696 1.42299 0.99671 1.70127 1.25117 1.19205 0.89436 1.29399 0.99162 0.91317 1.24743 0.96439 1.01673 0.98055 1.69679 1.07149 1.50689 1.30208 0.86216 0.79498 0.78933 0.81671 1.21824 1.21780 1.20822 1.47664 1.50955 1.12116 1.22364 1.21696 0.99671 0.82076 1.02704 1.20347 0.77793 0.86935 0.84219 1.90700 1.57023 1.17125 1.76746 1.21509 1.00825 0.99964 0.95073 1.21233 1.01130 0.98333 0.93473 1.22937 0.93846 0.92684 0.92100 1.86125 1.64231 1.40390 1.31275 1.19080 0.93745 0.92146 0.86781 1.21182 1.04974 0.95228 0.98784 1.20944 0.97472 1.00314 0.94320 1.17576 1.00564 0.93401 0.85197 1.91485 1.84890 1.88408 1.47461 1.20959 1.00835 0.94084 0.97276 1.20332 0.99318 1.00833 0.93965 0.92464 0.91486 0.92727 0.95476 0.96225 0.77953 0.93561 0.93402 0.91291 0.90404 0.88232 0.89203 0.90165 0.89346 0.91474 0.91900 0.84286 0.84510 0.84118 0.83997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.19 37.16 0.34 -1.58 16 2 C 0.12 2.09 2.80 -67.93 -0.19 1.90 16 3 H 0.10 1.94 6.90 -51.93 -0.36 1.58 16 4 C 0.14 2.85 5.50 -4.04 -0.02 2.82 16 5 N -0.73 -18.57 5.43 -59.90 -0.33 -18.90 16 6 C -0.24 -6.75 9.99 -15.06 -0.15 -6.90 16 7 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 8 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 9 N -0.93 -28.38 13.06 55.49 0.72 -27.65 16 10 Si 0.91 22.48 29.55 -169.99 -5.02 17.46 16 11 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 12 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 13 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 14 N -0.60 -9.42 2.24 -173.93 -0.39 -9.81 16 15 C 0.08 1.01 9.29 59.85 0.56 1.56 16 16 C 0.52 8.75 7.39 -10.98 -0.08 8.67 16 17 O -0.54 -11.25 15.31 5.56 0.09 -11.17 16 18 C -0.13 -1.63 4.25 -27.88 -0.12 -1.75 16 19 C -0.10 -1.31 4.87 -26.74 -0.13 -1.44 16 20 C 0.06 0.60 4.74 37.16 0.18 0.77 16 21 O -0.31 -3.67 10.14 -19.58 -0.20 -3.86 16 22 C 0.13 1.37 6.69 -39.24 -0.26 1.11 16 23 C -0.18 -1.68 9.04 -39.44 -0.36 -2.03 16 24 C -0.11 -0.99 10.02 -39.53 -0.40 -1.39 16 25 C 0.05 0.50 7.30 -39.42 -0.29 0.22 16 26 F -0.14 -1.49 17.27 2.25 0.04 -1.45 16 27 C -0.11 -0.99 10.02 -39.53 -0.40 -1.39 16 28 C -0.13 -1.20 9.98 -39.44 -0.39 -1.60 16 29 H 0.06 0.64 7.67 -51.93 -0.40 0.24 16 30 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.02 0.38 6.88 -51.93 -0.36 0.02 16 34 H 0.39 10.69 7.08 -40.82 -0.29 10.40 16 35 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 36 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.07 0.78 6.45 -51.93 -0.33 0.44 16 38 H 0.08 1.04 6.53 -51.93 -0.34 0.70 16 39 H 0.10 1.19 7.41 -51.93 -0.38 0.80 16 40 H 0.09 0.80 8.10 -51.93 -0.42 0.37 16 41 H 0.08 1.04 8.10 -51.93 -0.42 0.62 16 42 H 0.09 1.37 8.10 -51.93 -0.42 0.94 16 43 H 0.07 0.63 7.65 -51.93 -0.40 0.23 16 44 H 0.06 0.49 7.67 -51.92 -0.40 0.10 16 45 H 0.14 1.02 6.30 -52.48 -0.33 0.69 16 46 H 0.14 0.94 8.06 -52.48 -0.42 0.52 16 47 H 0.14 0.93 8.06 -52.48 -0.42 0.51 16 48 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 LS Contribution 398.63 15.07 6.01 6.01 Total: -1.00 -34.42 398.63 -8.24 -42.66 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: -7.36 Total: 8.20 kcal Atomic # 6 Polarization: 0.32 SS G_CDS: -1.81 Total: -1.48 kcal Atomic # 7 Polarization: -56.37 SS G_CDS: 0.01 Total: -56.36 kcal Atomic # 8 Polarization: -14.92 SS G_CDS: -0.11 Total: -15.03 kcal Atomic # 9 Polarization: -1.49 SS G_CDS: 0.04 Total: -1.45 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -34.42 -8.24 -42.66 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732433679.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.140 kcal (2) G-P(sol) polarization free energy of solvation -34.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds