Wall clock time and date at job start Tue Mar 31 2020 21:09:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47289 * 2 1 4 4 C 1.52997 * 109.47232 * 119.99925 * 2 1 3 5 5 N 1.46510 * 109.47089 * 175.00079 * 4 2 1 6 6 C 1.36935 * 119.99877 * 179.97438 * 5 4 2 7 7 H 1.08000 * 119.99830 * 0.02562 * 6 5 4 8 8 C 1.38808 * 119.99865 * 179.97438 * 6 5 4 9 9 N 1.31618 * 120.00351 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99891 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47256 * 90.00250 * 10 8 6 12 12 H 1.48504 * 109.46790 * 210.00015 * 10 8 6 13 13 H 1.48502 * 109.47224 * 329.99889 * 10 8 6 14 14 N 1.46506 * 109.47289 * 239.99872 * 2 1 3 15 15 C 1.46499 * 119.99936 * 299.99999 * 14 2 1 16 16 C 1.34773 * 119.99969 * 119.71964 * 14 2 1 17 17 O 1.21281 * 120.00220 * 0.02562 * 16 14 2 18 18 C 1.50706 * 120.00080 * 180.02562 * 16 14 2 19 19 C 1.52992 * 109.47274 * 180.02562 * 18 16 14 20 20 C 1.52996 * 109.47231 * 180.02562 * 19 18 16 21 21 O 1.42901 * 109.47396 * 179.97438 * 20 19 18 22 22 C 1.35949 * 117.00145 * 180.02562 * 21 20 19 23 23 C 1.38704 * 120.02817 * 359.72247 * 22 21 20 24 24 C 1.38151 * 119.96848 * 179.79263 * 23 22 21 25 25 C 1.38452 * 120.03015 * 0.48659 * 24 23 22 26 26 F 1.35101 * 119.97299 * 179.72113 * 25 24 23 27 27 C 1.38456 * 120.05748 * 359.74645 * 25 24 23 28 28 C 1.38151 * 120.03281 * 0.02562 * 27 25 24 29 29 H 1.09001 * 109.46832 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47153 * 300.00084 * 1 2 3 31 31 H 1.08996 * 109.46952 * 60.00255 * 1 2 3 32 32 H 1.09001 * 109.46992 * 294.99548 * 4 2 1 33 33 H 1.09002 * 109.47223 * 55.00179 * 4 2 1 34 34 H 0.96998 * 119.99795 * 359.97438 * 5 4 2 35 35 H 0.96996 * 120.00415 * 180.02562 * 9 8 6 36 36 H 1.09003 * 109.47269 * 89.99349 * 15 14 2 37 37 H 1.08994 * 109.47173 * 210.00167 * 15 14 2 38 38 H 1.09005 * 109.47077 * 330.00338 * 15 14 2 39 39 H 1.09004 * 109.46762 * 300.00389 * 18 16 14 40 40 H 1.08998 * 109.46924 * 59.99727 * 18 16 14 41 41 H 1.09004 * 109.47116 * 299.99649 * 19 18 16 42 42 H 1.08993 * 109.47352 * 59.99893 * 19 18 16 43 43 H 1.08999 * 109.47343 * 300.00090 * 20 19 18 44 44 H 1.09010 * 109.47369 * 59.99437 * 20 19 18 45 45 H 1.08007 * 120.01933 * 0.02562 * 23 22 21 46 46 H 1.08008 * 119.98738 * 180.20380 * 24 23 22 47 47 H 1.08003 * 119.98299 * 180.02562 * 27 25 24 48 48 H 1.07994 * 120.01262 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5001 -0.8263 1.1905 6 6 4.1840 -1.4378 2.2072 7 1 3.6469 -1.8430 3.0520 8 6 5.5673 -1.5379 2.1513 9 7 6.2218 -1.0446 1.1214 10 14 6.5001 -2.3727 3.5378 11 1 6.6318 -3.8222 3.2434 12 1 7.8508 -1.7678 3.6602 13 1 5.7594 -2.1917 4.8121 14 7 2.0184 -0.6907 -1.1962 15 6 1.6645 -2.0932 -1.4280 16 6 2.7885 -0.0340 -2.0862 17 8 3.0777 1.1284 -1.8966 18 6 3.2905 -0.7443 -3.3169 19 6 4.1353 0.2191 -4.1529 20 6 4.6443 -0.5018 -5.4027 21 8 5.4329 0.3982 -6.1838 22 6 5.9642 -0.0880 -7.3369 23 6 5.7355 -1.4056 -7.7050 24 6 6.2724 -1.8973 -8.8791 25 6 7.0468 -1.0783 -9.6832 26 9 7.5759 -1.5619 -10.8283 27 6 7.2798 0.2358 -9.3145 28 6 6.7402 0.7313 -8.1432 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.7517 -0.1582 2.1369 33 1 1.6054 -1.7198 1.2951 34 1 3.9824 -0.4627 0.4315 35 1 7.1884 -1.1148 1.0822 36 1 0.7375 -2.1445 -1.9992 37 1 2.4629 -2.5819 -1.9862 38 1 1.5295 -2.5969 -0.4707 39 1 3.8999 -1.5981 -3.0205 40 1 2.4425 -1.0909 -3.9076 41 1 3.5262 1.0731 -4.4493 42 1 4.9832 0.5652 -3.5620 43 1 5.2533 -1.3560 -5.1068 44 1 3.7960 -0.8477 -5.9935 45 1 5.1349 -2.0460 -7.0759 46 1 6.0919 -2.9223 -9.1677 47 1 7.8837 0.8737 -9.9428 48 1 6.9225 1.7562 -7.8557 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732433679.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:09:11 Heat of formation + Delta-G solvation = -106.818556 kcal Electronic energy + Delta-G solvation = -28606.624888 eV Core-core repulsion = 24382.881802 eV Total energy + Delta-G solvation = -4223.743085 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -49.82266 -41.21586 -40.92946 -38.39616 -37.86494 -35.81327 -34.90295 -33.42687 -32.24088 -31.80598 -30.40447 -28.19409 -27.66709 -27.36104 -24.77226 -24.37746 -23.51331 -22.68388 -21.73608 -20.00964 -19.25241 -19.09526 -18.44997 -18.17248 -17.50137 -17.47002 -17.05013 -16.66486 -16.55640 -16.41386 -15.70260 -15.49834 -15.31538 -15.19287 -14.75260 -14.73401 -14.56398 -14.03039 -13.98512 -13.83968 -13.67228 -13.53370 -13.39801 -13.24907 -13.12967 -12.90230 -12.82297 -12.77131 -12.51314 -12.41975 -12.19214 -12.13823 -11.79908 -11.73706 -11.71881 -11.52359 -10.97827 -10.72511 -10.19028 -9.51065 -9.11955 -8.99756 -7.93771 -5.23541 0.15946 0.19320 1.45291 1.47570 1.55949 1.72899 1.95561 2.33489 2.55170 2.56409 3.32210 3.38961 3.55476 3.70464 3.81454 3.87172 3.91918 4.02170 4.09581 4.12789 4.23550 4.31432 4.33194 4.38632 4.40011 4.45745 4.49709 4.61983 4.66712 4.79297 4.82195 4.87326 4.90614 4.95034 5.04989 5.09743 5.11654 5.13862 5.17639 5.19785 5.27019 5.32650 5.47848 5.71344 5.72034 6.26053 6.38118 6.53530 7.29607 7.33096 8.09335 8.32690 9.29075 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011307 B = 0.002213 C = 0.001957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2475.692261 B =12647.315416 C =14302.297791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.128 3.872 3 H 0.063 0.937 4 C 0.141 3.859 5 N -0.741 5.741 6 C -0.243 4.243 7 H 0.078 0.922 8 C -0.076 4.076 9 N -0.968 5.968 10 Si 0.974 3.026 11 H -0.283 1.283 12 H -0.300 1.300 13 H -0.270 1.270 14 N -0.600 5.600 15 C 0.076 3.924 16 C 0.503 3.497 17 O -0.594 6.594 18 C -0.122 4.122 19 C -0.098 4.098 20 C 0.063 3.937 21 O -0.331 6.331 22 C 0.109 3.891 23 C -0.183 4.183 24 C -0.112 4.112 25 C 0.037 3.963 26 F -0.149 7.149 27 C -0.112 4.112 28 C -0.137 4.137 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.063 0.937 32 H 0.026 0.974 33 H 0.039 0.961 34 H 0.372 0.628 35 H 0.249 0.751 36 H 0.088 0.912 37 H 0.079 0.921 38 H 0.067 0.933 39 H 0.105 0.895 40 H 0.136 0.864 41 H 0.070 0.930 42 H 0.045 0.955 43 H 0.076 0.924 44 H 0.095 0.905 45 H 0.160 0.840 46 H 0.158 0.842 47 H 0.160 0.840 48 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.051 -4.041 -20.694 22.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.024 3.976 3 H 0.081 0.919 4 C 0.014 3.986 5 N -0.384 5.384 6 C -0.375 4.375 7 H 0.095 0.905 8 C -0.269 4.269 9 N -0.619 5.619 10 Si 0.803 3.197 11 H -0.210 1.210 12 H -0.227 1.227 13 H -0.195 1.195 14 N -0.332 5.332 15 C -0.066 4.066 16 C 0.293 3.707 17 O -0.475 6.475 18 C -0.162 4.162 19 C -0.137 4.137 20 C -0.011 4.011 21 O -0.245 6.245 22 C 0.064 3.936 23 C -0.201 4.201 24 C -0.130 4.130 25 C 0.018 3.982 26 F -0.128 7.128 27 C -0.130 4.130 28 C -0.156 4.156 29 H 0.097 0.903 30 H 0.094 0.906 31 H 0.082 0.918 32 H 0.044 0.956 33 H 0.057 0.943 34 H 0.203 0.797 35 H 0.058 0.942 36 H 0.106 0.894 37 H 0.098 0.902 38 H 0.085 0.915 39 H 0.124 0.876 40 H 0.154 0.846 41 H 0.089 0.911 42 H 0.064 0.936 43 H 0.094 0.906 44 H 0.113 0.887 45 H 0.177 0.823 46 H 0.175 0.825 47 H 0.177 0.823 48 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -8.897 -3.376 -20.353 22.468 hybrid contribution 1.269 -0.198 0.629 1.430 sum -7.628 -3.574 -19.724 21.448 Atomic orbital electron populations 1.21941 0.91339 1.03631 1.02946 1.21225 0.96007 0.96270 0.84108 0.91891 1.21212 0.84167 0.97892 0.95343 1.42513 1.01972 1.69797 1.24099 1.19635 0.89935 1.28300 0.99619 0.90456 1.25583 0.97528 1.03153 1.00592 1.69861 1.06877 1.52747 1.32385 0.85136 0.77514 0.77905 0.79149 1.20980 1.22685 1.19514 1.47834 1.50371 1.13482 1.21475 1.21961 1.01997 0.79683 1.02957 1.21245 0.77201 0.86647 0.85569 1.90670 1.58956 1.19697 1.78182 1.21516 1.02228 0.99072 0.93352 1.21107 0.99564 0.98671 0.94314 1.22939 0.94986 0.92003 0.91216 1.86083 1.64900 1.41465 1.32042 1.19334 0.94500 0.93159 0.86655 1.21400 1.04913 0.94781 0.99019 1.21202 0.96732 1.01206 0.93901 1.17827 1.01130 0.93973 0.85320 1.91469 1.85060 1.88497 1.47810 1.21158 1.00576 0.94190 0.97109 1.20519 0.99486 1.01290 0.94266 0.90334 0.90551 0.91810 0.95634 0.94329 0.79672 0.94237 0.89370 0.90207 0.91454 0.87635 0.84603 0.91142 0.93565 0.90571 0.88656 0.82250 0.82457 0.82284 0.83461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.18 9.19 71.98 0.66 -2.52 16 2 C 0.13 4.25 2.80 44.99 0.13 4.38 16 3 H 0.06 2.56 6.90 -2.39 -0.02 2.55 16 4 C 0.14 5.54 5.50 86.38 0.48 6.01 16 5 N -0.74 -38.33 5.43 -343.44 -1.87 -40.20 16 6 C -0.24 -13.64 9.99 84.03 0.84 -12.80 16 7 H 0.08 4.12 7.83 -2.91 -0.02 4.09 16 8 C -0.08 -4.44 5.50 84.86 0.47 -3.97 16 9 N -0.97 -60.65 13.06 21.65 0.28 -60.37 16 10 Si 0.97 46.49 29.55 68.60 2.03 48.51 16 11 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 12 H -0.30 -14.62 7.11 99.48 0.71 -13.91 16 13 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 14 N -0.60 -18.34 2.24 -822.59 -1.84 -20.18 16 15 C 0.08 1.64 9.29 127.77 1.19 2.83 16 16 C 0.50 17.15 7.39 87.66 0.65 17.79 16 17 O -0.59 -26.26 15.31 -3.03 -0.05 -26.31 16 18 C -0.12 -2.83 4.25 29.85 0.13 -2.70 16 19 C -0.10 -2.52 4.87 30.59 0.15 -2.37 16 20 C 0.06 1.19 4.74 71.98 0.34 1.54 16 21 O -0.33 -7.87 10.14 -92.97 -0.94 -8.82 16 22 C 0.11 2.25 6.69 22.49 0.15 2.40 16 23 C -0.18 -3.02 9.04 22.36 0.20 -2.81 16 24 C -0.11 -1.78 10.02 22.30 0.22 -1.56 16 25 C 0.04 0.67 7.30 22.37 0.16 0.83 16 26 F -0.15 -2.95 17.27 44.97 0.78 -2.17 16 27 C -0.11 -1.88 10.02 22.30 0.22 -1.66 16 28 C -0.14 -2.59 9.98 22.36 0.22 -2.36 16 29 H 0.08 1.46 7.67 -2.39 -0.02 1.44 16 30 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.04 1.40 6.88 -2.39 -0.02 1.38 16 34 H 0.37 21.26 7.08 -92.71 -0.66 20.60 16 35 H 0.25 15.17 8.31 -92.71 -0.77 14.40 16 36 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.08 1.56 6.45 -2.39 -0.02 1.54 16 38 H 0.07 1.61 6.53 -2.38 -0.02 1.60 16 39 H 0.11 2.36 7.41 -2.39 -0.02 2.34 16 40 H 0.14 1.88 8.10 -2.39 -0.02 1.86 16 41 H 0.07 1.90 8.10 -2.39 -0.02 1.88 16 42 H 0.05 1.55 8.10 -2.39 -0.02 1.53 16 43 H 0.08 1.30 7.65 -2.39 -0.02 1.28 16 44 H 0.10 1.19 7.67 -2.38 -0.02 1.18 16 45 H 0.16 1.86 6.30 -2.91 -0.02 1.85 16 46 H 0.16 1.77 8.06 -2.91 -0.02 1.74 16 47 H 0.16 1.94 8.06 -2.91 -0.02 1.92 16 48 H 0.15 2.48 8.06 -2.91 -0.02 2.46 16 Total: -1.00 -78.36 398.63 4.91 -73.45 By element: Atomic # 1 Polarization: 32.74 SS G_CDS: 0.31 Total: 33.05 kcal Atomic # 6 Polarization: -3.18 SS G_CDS: 6.21 Total: 3.03 kcal Atomic # 7 Polarization: -117.33 SS G_CDS: -3.43 Total: -120.75 kcal Atomic # 8 Polarization: -34.14 SS G_CDS: -0.99 Total: -35.13 kcal Atomic # 9 Polarization: -2.95 SS G_CDS: 0.78 Total: -2.17 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 2.03 Total: 48.51 kcal Total: -78.36 4.91 -73.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732433679.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.365 kcal (2) G-P(sol) polarization free energy of solvation -78.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds