Wall clock time and date at job start Tue Mar 31 2020 20:57:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42894 * 113.99944 * 2 1 4 4 C 1.53002 * 109.47433 * 174.05137 * 3 2 1 5 5 C 1.50703 * 109.47563 * 54.04745 * 3 2 1 6 6 O 1.21285 * 119.99824 * 214.99987 * 5 3 2 7 7 N 1.34777 * 119.99546 * 35.00314 * 5 3 2 8 8 C 1.46500 * 119.99262 * 179.97438 * 7 5 3 9 9 H 1.08995 * 109.47718 * 324.99871 * 8 7 5 10 10 C 1.53002 * 109.46938 * 85.00497 * 8 7 5 11 11 C 1.53004 * 109.46792 * 204.99607 * 8 7 5 12 12 N 1.46500 * 109.46731 * 55.00543 * 11 8 7 13 13 C 1.46497 * 119.99902 * 269.99497 * 12 11 8 14 14 C 1.36935 * 120.00239 * 90.00374 * 12 11 8 15 15 H 1.08002 * 120.00251 * 21.92466 * 14 12 11 16 16 C 1.38816 * 119.99975 * 201.93193 * 14 12 11 17 17 N 1.31621 * 119.99901 * 20.45001 * 16 14 12 18 18 Si 1.86799 * 119.99775 * 200.44602 * 16 14 12 19 19 H 1.48507 * 109.46862 * 60.00313 * 18 16 14 20 20 H 1.48500 * 109.46792 * 179.97438 * 18 16 14 21 21 H 1.48493 * 109.47454 * 300.00047 * 18 16 14 22 22 C 1.50711 * 109.47220 * 294.04730 * 3 2 1 23 23 C 1.38218 * 120.00717 * 357.88067 * 22 3 2 24 24 C 1.38228 * 120.02467 * 180.02562 * 23 22 3 25 25 C 1.38267 * 120.04907 * 0.02562 * 24 23 22 26 26 C 1.38182 * 120.02464 * 359.97438 * 25 24 23 27 27 C 1.38431 * 120.01618 * 177.89775 * 22 3 2 28 28 F 1.35105 * 120.02680 * 0.02562 * 27 22 3 29 29 H 1.08994 * 109.47105 * 173.50702 * 1 2 3 30 30 H 1.09003 * 109.47200 * 293.51058 * 1 2 3 31 31 H 1.09002 * 109.46969 * 53.51073 * 1 2 3 32 32 H 1.08995 * 109.47427 * 179.97438 * 4 3 2 33 33 H 1.09000 * 109.47025 * 299.99826 * 4 3 2 34 34 H 1.08999 * 109.46724 * 59.99446 * 4 3 2 35 35 H 0.96991 * 120.00289 * 0.02562 * 7 5 3 36 36 H 1.08998 * 109.47816 * 59.99536 * 10 8 7 37 37 H 1.09004 * 109.47372 * 179.97438 * 10 8 7 38 38 H 1.09000 * 109.47025 * 299.99162 * 10 8 7 39 39 H 1.08997 * 109.46901 * 175.00047 * 11 8 7 40 40 H 1.09000 * 109.47076 * 295.00600 * 11 8 7 41 41 H 1.09001 * 109.47153 * 95.27047 * 13 12 11 42 42 H 1.09003 * 109.47410 * 215.26560 * 13 12 11 43 43 H 1.08996 * 109.47425 * 335.26967 * 13 12 11 44 44 H 0.97000 * 119.99979 * 180.02562 * 17 16 14 45 45 H 1.08010 * 119.98864 * 0.02562 * 23 22 3 46 46 H 1.07997 * 119.97297 * 180.02562 * 24 23 22 47 47 H 1.07995 * 119.98190 * 179.72527 * 25 24 23 48 48 H 1.07994 * 120.00632 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5283 1.1879 0.1495 5 6 1.4525 2.1037 1.1501 6 8 1.2663 3.2958 1.0270 7 7 1.1607 1.4928 2.3155 8 6 0.6191 2.2690 3.4338 9 1 1.0627 3.2646 3.4337 10 6 -0.8991 2.3871 3.2846 11 6 0.9486 1.5638 4.7510 12 7 2.3944 1.3438 4.8386 13 6 2.9804 0.1079 4.3140 14 6 3.1980 2.2934 5.4111 15 1 2.7781 3.0135 6.0978 16 6 4.5523 2.3305 5.1086 17 7 4.9975 1.7558 4.0114 18 14 5.7427 3.1962 6.2587 19 1 5.6916 2.5558 7.5976 20 1 7.1203 3.0937 5.7138 21 1 5.3627 4.6266 6.3794 22 6 1.6856 1.9999 -1.2976 23 6 0.9665 1.3378 -2.2749 24 6 0.6691 1.9742 -3.4653 25 6 1.0908 3.2734 -3.6801 26 6 1.8098 3.9372 -2.7045 27 6 2.1077 3.3008 -1.5112 28 9 2.8114 3.9486 -0.5570 29 1 -0.3633 -1.0210 -0.1162 30 1 -0.3634 0.4100 0.9424 31 1 -0.3633 0.6111 -0.8262 32 1 3.9717 2.1836 0.1490 33 1 3.7632 0.6856 1.0880 34 1 3.9316 0.6105 -0.6824 35 1 1.3100 0.5395 2.4141 36 1 -1.3428 1.3916 3.2846 37 1 -1.3022 2.9642 4.1168 38 1 -1.1339 2.8895 2.3462 39 1 0.6243 2.1843 5.5863 40 1 0.4322 0.6046 4.7887 41 1 3.3346 0.2769 3.2971 42 1 3.8167 -0.1940 4.9445 43 1 2.2259 -0.6788 4.3099 44 1 5.9439 1.7815 3.8002 45 1 0.6369 0.3228 -2.1083 46 1 0.1068 1.4563 -4.2282 47 1 0.8616 3.7680 -4.6124 48 1 2.1387 4.9520 -2.8724 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733042994.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:51 Heat of formation + Delta-G solvation = -58.493019 kcal Electronic energy + Delta-G solvation = -32219.079466 eV Core-core repulsion = 27997.431933 eV Total energy + Delta-G solvation = -4221.647533 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -48.47431 -40.57931 -38.62402 -37.30362 -36.28567 -34.02758 -32.58251 -31.27152 -30.75776 -30.19735 -29.33218 -26.38389 -26.15529 -25.60096 -24.45086 -22.72712 -22.60660 -21.37498 -20.11032 -19.64063 -17.74203 -17.51132 -16.79744 -16.39301 -15.92835 -15.42028 -15.28141 -15.17650 -14.86090 -14.84742 -14.58455 -14.04883 -13.92961 -13.59063 -13.29371 -13.18113 -12.88125 -12.71062 -12.33860 -12.26580 -12.12572 -12.06000 -11.88327 -11.80927 -11.66796 -11.46644 -11.32556 -11.07609 -10.90473 -10.84297 -10.72115 -10.55099 -10.22286 -10.12119 -9.95923 -9.80399 -9.11062 -8.84796 -8.55278 -8.52565 -8.27849 -6.73674 -5.71818 -3.13198 1.13841 1.24443 3.06566 3.42539 3.44464 3.48124 3.49175 3.69745 3.85429 4.44162 4.54479 4.57969 4.79108 4.88572 5.06785 5.15800 5.26099 5.30553 5.36634 5.41794 5.46452 5.52473 5.67629 5.68409 5.77444 5.85461 5.97716 6.01569 6.05224 6.09861 6.10893 6.17467 6.24392 6.27622 6.34516 6.46495 6.54013 6.60046 6.65168 6.88457 6.92337 6.99801 7.21340 7.27741 7.64705 7.84139 8.13724 8.40047 8.80140 9.23517 9.88025 10.36357 11.33452 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.014305 B = 0.004273 C = 0.003845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1956.838683 B = 6551.394416 C = 7280.206406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.001 4.001 2 O -0.361 6.361 3 C 0.150 3.850 4 C -0.135 4.135 5 C 0.502 3.498 6 O -0.532 6.532 7 N -0.688 5.688 8 C 0.115 3.885 9 H 0.086 0.914 10 C -0.158 4.158 11 C 0.143 3.857 12 N -0.594 5.594 13 C 0.157 3.843 14 C -0.261 4.261 15 H 0.067 0.933 16 C 0.009 3.991 17 N -0.894 5.894 18 Si 0.898 3.102 19 H -0.286 1.286 20 H -0.292 1.292 21 H -0.284 1.284 22 C -0.140 4.140 23 C -0.085 4.085 24 C -0.144 4.144 25 C -0.089 4.089 26 C -0.167 4.167 27 C 0.150 3.850 28 F -0.114 7.114 29 H 0.091 0.909 30 H 0.053 0.947 31 H 0.056 0.944 32 H 0.083 0.917 33 H 0.091 0.909 34 H 0.068 0.932 35 H 0.399 0.601 36 H 0.048 0.952 37 H 0.061 0.939 38 H 0.049 0.951 39 H 0.059 0.941 40 H 0.041 0.959 41 H 0.034 0.966 42 H 0.037 0.963 43 H -0.001 1.001 44 H 0.252 0.748 45 H 0.141 0.859 46 H 0.127 0.873 47 H 0.129 0.871 48 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.623 -3.775 -13.911 17.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 O -0.280 6.280 3 C 0.107 3.893 4 C -0.192 4.192 5 C 0.286 3.714 6 O -0.409 6.409 7 N -0.338 5.338 8 C 0.008 3.992 9 H 0.104 0.896 10 C -0.218 4.218 11 C 0.015 3.985 12 N -0.316 5.316 13 C 0.012 3.988 14 C -0.391 4.391 15 H 0.084 0.916 16 C -0.190 4.190 17 N -0.538 5.538 18 Si 0.728 3.272 19 H -0.212 1.212 20 H -0.218 1.218 21 H -0.210 1.210 22 C -0.142 4.142 23 C -0.103 4.103 24 C -0.163 4.163 25 C -0.107 4.107 26 C -0.186 4.186 27 C 0.130 3.870 28 F -0.092 7.092 29 H 0.110 0.890 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.102 0.898 33 H 0.109 0.891 34 H 0.087 0.913 35 H 0.234 0.766 36 H 0.067 0.933 37 H 0.080 0.920 38 H 0.069 0.931 39 H 0.077 0.923 40 H 0.059 0.941 41 H 0.053 0.947 42 H 0.056 0.944 43 H 0.017 0.983 44 H 0.062 0.938 45 H 0.158 0.842 46 H 0.145 0.855 47 H 0.147 0.853 48 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -10.417 -3.096 -13.972 17.701 hybrid contribution 0.787 0.466 0.705 1.155 sum -9.630 -2.630 -13.267 16.603 Atomic orbital electron populations 1.23290 0.81356 1.03162 1.01947 1.88018 1.19762 1.25560 1.94620 1.20532 0.96755 0.82426 0.89610 1.21807 0.88577 1.04403 1.04433 1.20596 0.78108 0.88245 0.84475 1.90693 1.52732 1.14731 1.82740 1.45780 1.63804 1.12323 1.11866 1.21903 0.91330 0.97882 0.88095 0.89607 1.22156 0.97014 1.00955 1.01635 1.21189 0.86625 0.97152 0.93544 1.43894 1.00688 1.17473 1.69501 1.20845 0.94297 0.84600 0.99020 1.19070 0.89883 1.11004 1.19124 0.91551 1.24879 0.98083 0.99689 0.96373 1.70072 1.13733 1.47898 1.22096 0.86444 0.80488 0.79458 0.80828 1.21238 1.21753 1.21029 1.20113 1.02472 0.94237 0.97401 1.21076 0.96339 1.00431 0.92417 1.21086 1.02259 0.95408 0.97515 1.20982 0.96591 0.94670 0.98471 1.21150 1.02795 1.01334 0.93308 1.17403 0.93310 0.90006 0.86279 1.91604 1.74896 1.80588 1.62127 0.89010 0.92879 0.92570 0.89847 0.89064 0.91336 0.76597 0.93265 0.92041 0.93143 0.92317 0.94095 0.94750 0.94397 0.98283 0.93836 0.84179 0.85515 0.85333 0.84826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.02 9.18 101.05 0.93 0.91 16 2 O -0.36 -5.34 9.10 -35.23 -0.32 -5.66 16 3 C 0.15 2.54 0.80 -92.92 -0.07 2.47 16 4 C -0.14 -2.42 8.64 37.16 0.32 -2.10 16 5 C 0.50 9.90 5.44 -10.98 -0.06 9.84 16 6 O -0.53 -12.09 12.99 5.55 0.07 -12.02 16 7 N -0.69 -12.88 3.17 -53.80 -0.17 -13.05 16 8 C 0.12 2.20 2.88 -67.93 -0.20 2.00 16 9 H 0.09 2.00 7.58 -51.93 -0.39 1.61 16 10 C -0.16 -2.42 9.48 37.16 0.35 -2.07 16 11 C 0.14 2.79 5.33 -4.04 -0.02 2.77 16 12 N -0.59 -14.22 2.77 -181.12 -0.50 -14.72 16 13 C 0.16 3.63 7.64 59.85 0.46 4.08 16 14 C -0.26 -7.09 9.62 -15.06 -0.14 -7.23 16 15 H 0.07 1.79 7.90 -52.49 -0.41 1.37 16 16 C 0.01 0.26 4.94 -17.43 -0.09 0.17 16 17 N -0.89 -25.39 11.10 55.49 0.62 -24.78 16 18 Si 0.90 22.05 29.60 -169.99 -5.03 17.02 16 19 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 20 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 21 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 22 C -0.14 -2.21 4.43 -104.55 -0.46 -2.67 16 23 C -0.08 -1.06 7.69 -39.59 -0.30 -1.37 16 24 C -0.14 -1.52 10.04 -39.57 -0.40 -1.92 16 25 C -0.09 -0.95 10.04 -39.59 -0.40 -1.35 16 26 C -0.17 -2.22 10.03 -39.51 -0.40 -2.61 16 27 C 0.15 2.50 6.19 -39.42 -0.24 2.25 16 28 F -0.11 -2.28 12.91 2.25 0.03 -2.25 16 29 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.05 0.69 6.27 -51.93 -0.33 0.36 16 31 H 0.06 0.64 4.97 -51.93 -0.26 0.38 16 32 H 0.08 1.64 6.47 -51.93 -0.34 1.30 16 33 H 0.09 1.81 7.72 -51.93 -0.40 1.41 16 34 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.40 7.16 6.37 -40.82 -0.26 6.90 16 36 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.06 1.12 8.03 -51.93 -0.42 0.70 16 40 H 0.04 0.70 7.86 -51.93 -0.41 0.30 16 41 H 0.03 0.85 6.51 -51.93 -0.34 0.51 16 42 H 0.04 0.95 7.47 -51.93 -0.39 0.56 16 43 H 0.00 -0.03 7.83 -51.93 -0.41 -0.43 16 44 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 45 H 0.14 1.53 5.42 -52.48 -0.28 1.25 16 46 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 47 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 48 H 0.13 1.53 8.06 -52.49 -0.42 1.11 16 LS Contribution 378.93 15.07 5.71 5.71 Total: -1.00 -31.85 378.93 -7.47 -39.32 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: -7.15 Total: 7.23 kcal Atomic # 6 Polarization: 3.92 SS G_CDS: -0.73 Total: 3.19 kcal Atomic # 7 Polarization: -52.49 SS G_CDS: -0.06 Total: -52.55 kcal Atomic # 8 Polarization: -17.43 SS G_CDS: -0.25 Total: -17.68 kcal Atomic # 9 Polarization: -2.28 SS G_CDS: 0.03 Total: -2.25 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.03 Total: 17.02 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -31.85 -7.47 -39.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733042994.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.168 kcal (2) G-P(sol) polarization free energy of solvation -31.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds