Wall clock time and date at job start Tue Mar 31 2020 20:57:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42894 * 113.99944 * 2 1 4 4 C 1.53002 * 109.47433 * 174.05137 * 3 2 1 5 5 C 1.50703 * 109.47563 * 54.04745 * 3 2 1 6 6 O 1.21285 * 119.99824 * 214.99987 * 5 3 2 7 7 N 1.34777 * 119.99546 * 35.00314 * 5 3 2 8 8 C 1.46500 * 119.99262 * 179.97438 * 7 5 3 9 9 H 1.08995 * 109.47718 * 324.99871 * 8 7 5 10 10 C 1.53002 * 109.46938 * 85.00497 * 8 7 5 11 11 C 1.53004 * 109.46792 * 204.99607 * 8 7 5 12 12 N 1.46500 * 109.46731 * 55.00543 * 11 8 7 13 13 C 1.46497 * 119.99902 * 269.99497 * 12 11 8 14 14 C 1.36935 * 120.00239 * 90.00374 * 12 11 8 15 15 H 1.08002 * 120.00251 * 21.92466 * 14 12 11 16 16 C 1.38816 * 119.99975 * 201.93193 * 14 12 11 17 17 N 1.31621 * 119.99901 * 20.45001 * 16 14 12 18 18 Si 1.86799 * 119.99775 * 200.44602 * 16 14 12 19 19 H 1.48507 * 109.46862 * 60.00313 * 18 16 14 20 20 H 1.48500 * 109.46792 * 179.97438 * 18 16 14 21 21 H 1.48493 * 109.47454 * 300.00047 * 18 16 14 22 22 C 1.50711 * 109.47220 * 294.04730 * 3 2 1 23 23 C 1.38218 * 120.00717 * 357.88067 * 22 3 2 24 24 C 1.38228 * 120.02467 * 180.02562 * 23 22 3 25 25 C 1.38267 * 120.04907 * 0.02562 * 24 23 22 26 26 C 1.38182 * 120.02464 * 359.97438 * 25 24 23 27 27 C 1.38431 * 120.01618 * 177.89775 * 22 3 2 28 28 F 1.35105 * 120.02680 * 0.02562 * 27 22 3 29 29 H 1.08994 * 109.47105 * 173.50702 * 1 2 3 30 30 H 1.09003 * 109.47200 * 293.51058 * 1 2 3 31 31 H 1.09002 * 109.46969 * 53.51073 * 1 2 3 32 32 H 1.08995 * 109.47427 * 179.97438 * 4 3 2 33 33 H 1.09000 * 109.47025 * 299.99826 * 4 3 2 34 34 H 1.08999 * 109.46724 * 59.99446 * 4 3 2 35 35 H 0.96991 * 120.00289 * 0.02562 * 7 5 3 36 36 H 1.08998 * 109.47816 * 59.99536 * 10 8 7 37 37 H 1.09004 * 109.47372 * 179.97438 * 10 8 7 38 38 H 1.09000 * 109.47025 * 299.99162 * 10 8 7 39 39 H 1.08997 * 109.46901 * 175.00047 * 11 8 7 40 40 H 1.09000 * 109.47076 * 295.00600 * 11 8 7 41 41 H 1.09001 * 109.47153 * 95.27047 * 13 12 11 42 42 H 1.09003 * 109.47410 * 215.26560 * 13 12 11 43 43 H 1.08996 * 109.47425 * 335.26967 * 13 12 11 44 44 H 0.97000 * 119.99979 * 180.02562 * 17 16 14 45 45 H 1.08010 * 119.98864 * 0.02562 * 23 22 3 46 46 H 1.07997 * 119.97297 * 180.02562 * 24 23 22 47 47 H 1.07995 * 119.98190 * 179.72527 * 25 24 23 48 48 H 1.07994 * 120.00632 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5283 1.1879 0.1495 5 6 1.4525 2.1037 1.1501 6 8 1.2663 3.2958 1.0270 7 7 1.1607 1.4928 2.3155 8 6 0.6191 2.2690 3.4338 9 1 1.0627 3.2646 3.4337 10 6 -0.8991 2.3871 3.2846 11 6 0.9486 1.5638 4.7510 12 7 2.3944 1.3438 4.8386 13 6 2.9804 0.1079 4.3140 14 6 3.1980 2.2934 5.4111 15 1 2.7781 3.0135 6.0978 16 6 4.5523 2.3305 5.1086 17 7 4.9975 1.7558 4.0114 18 14 5.7427 3.1962 6.2587 19 1 5.6916 2.5558 7.5976 20 1 7.1203 3.0937 5.7138 21 1 5.3627 4.6266 6.3794 22 6 1.6856 1.9999 -1.2976 23 6 0.9665 1.3378 -2.2749 24 6 0.6691 1.9742 -3.4653 25 6 1.0908 3.2734 -3.6801 26 6 1.8098 3.9372 -2.7045 27 6 2.1077 3.3008 -1.5112 28 9 2.8114 3.9486 -0.5570 29 1 -0.3633 -1.0210 -0.1162 30 1 -0.3634 0.4100 0.9424 31 1 -0.3633 0.6111 -0.8262 32 1 3.9717 2.1836 0.1490 33 1 3.7632 0.6856 1.0880 34 1 3.9316 0.6105 -0.6824 35 1 1.3100 0.5395 2.4141 36 1 -1.3428 1.3916 3.2846 37 1 -1.3022 2.9642 4.1168 38 1 -1.1339 2.8895 2.3462 39 1 0.6243 2.1843 5.5863 40 1 0.4322 0.6046 4.7887 41 1 3.3346 0.2769 3.2971 42 1 3.8167 -0.1940 4.9445 43 1 2.2259 -0.6788 4.3099 44 1 5.9439 1.7815 3.8002 45 1 0.6369 0.3228 -2.1083 46 1 0.1068 1.4563 -4.2282 47 1 0.8616 3.7680 -4.6124 48 1 2.1387 4.9520 -2.8724 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733042994.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:51 Heat of formation + Delta-G solvation = -78.251622 kcal Electronic energy + Delta-G solvation = -32219.936264 eV Core-core repulsion = 27997.431933 eV Total energy + Delta-G solvation = -4222.504330 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -49.78077 -41.87508 -39.85753 -38.49776 -37.97832 -35.78844 -33.81554 -33.10655 -31.95955 -31.56808 -30.48953 -27.98587 -27.47636 -27.33442 -25.81601 -23.94746 -23.72843 -23.03083 -21.63843 -21.05810 -19.03966 -18.79582 -18.61703 -17.62160 -17.13298 -16.92552 -16.74124 -16.52543 -16.43595 -15.89064 -15.76387 -15.66841 -15.40851 -15.05974 -15.03909 -14.50825 -14.40713 -13.91528 -13.80142 -13.60656 -13.45987 -13.32037 -13.25395 -13.12669 -13.05204 -12.79721 -12.72160 -12.66232 -12.57988 -12.41002 -12.31468 -12.06609 -12.02581 -11.81678 -11.74029 -11.28031 -10.60058 -10.45757 -9.90238 -9.89952 -9.57730 -8.73006 -7.82152 -5.24481 0.14604 0.25344 1.43857 1.44586 1.51040 1.56967 2.19294 2.51516 2.56834 2.67323 3.29693 3.36710 3.44603 3.63183 3.73208 3.81513 3.95269 4.14922 4.16186 4.37159 4.38267 4.39433 4.44128 4.47626 4.53903 4.55810 4.64771 4.73200 4.80871 4.81991 4.86766 4.87564 4.97357 5.04578 5.14697 5.15397 5.21133 5.30195 5.34188 5.34895 5.42735 5.66189 5.67948 5.75894 5.87558 5.95597 6.33590 6.63618 7.17135 7.30054 7.90028 8.31639 9.19655 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.014305 B = 0.004273 C = 0.003845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1956.838683 B = 6551.394416 C = 7280.206406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.007 4.007 2 O -0.363 6.363 3 C 0.160 3.840 4 C -0.127 4.127 5 C 0.494 3.506 6 O -0.569 6.569 7 N -0.683 5.683 8 C 0.120 3.880 9 H 0.032 0.968 10 C -0.143 4.143 11 C 0.142 3.858 12 N -0.607 5.607 13 C 0.170 3.830 14 C -0.268 4.268 15 H 0.064 0.936 16 C -0.042 4.042 17 N -0.917 5.917 18 Si 0.953 3.047 19 H -0.277 1.277 20 H -0.297 1.297 21 H -0.285 1.285 22 C -0.161 4.161 23 C -0.086 4.086 24 C -0.129 4.129 25 C -0.078 4.078 26 C -0.175 4.175 27 C 0.104 3.896 28 F -0.149 7.149 29 H 0.128 0.872 30 H 0.041 0.959 31 H 0.063 0.937 32 H 0.055 0.945 33 H 0.064 0.936 34 H 0.091 0.909 35 H 0.403 0.597 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.037 0.963 39 H 0.064 0.936 40 H 0.076 0.924 41 H 0.014 0.986 42 H 0.008 0.992 43 H 0.038 0.962 44 H 0.244 0.756 45 H 0.159 0.841 46 H 0.170 0.830 47 H 0.169 0.831 48 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.314 -5.432 -15.722 21.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 O -0.281 6.281 3 C 0.117 3.883 4 C -0.184 4.184 5 C 0.279 3.721 6 O -0.448 6.448 7 N -0.333 5.333 8 C 0.013 3.987 9 H 0.051 0.949 10 C -0.202 4.202 11 C 0.016 3.984 12 N -0.329 5.329 13 C 0.025 3.975 14 C -0.399 4.399 15 H 0.081 0.919 16 C -0.239 4.239 17 N -0.563 5.563 18 Si 0.782 3.218 19 H -0.203 1.203 20 H -0.223 1.223 21 H -0.211 1.211 22 C -0.162 4.162 23 C -0.104 4.104 24 C -0.147 4.147 25 C -0.096 4.096 26 C -0.194 4.194 27 C 0.084 3.916 28 F -0.127 7.127 29 H 0.146 0.854 30 H 0.060 0.940 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.110 0.890 35 H 0.240 0.760 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.056 0.944 39 H 0.082 0.918 40 H 0.095 0.905 41 H 0.032 0.968 42 H 0.027 0.973 43 H 0.057 0.943 44 H 0.054 0.946 45 H 0.177 0.823 46 H 0.188 0.812 47 H 0.187 0.813 48 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -13.145 -4.774 -15.765 21.074 hybrid contribution 1.510 0.970 1.208 2.163 sum -11.635 -3.804 -14.557 19.020 Atomic orbital electron populations 1.23541 0.79537 1.05514 1.01688 1.88005 1.21626 1.23884 1.94610 1.20203 0.95506 0.83135 0.89468 1.21647 0.90213 1.02673 1.03890 1.21213 0.77440 0.88090 0.85326 1.90665 1.54223 1.16458 1.83502 1.45781 1.63528 1.12391 1.11594 1.21718 0.93712 0.95116 0.88153 0.94918 1.22005 0.93716 1.02861 1.01631 1.21371 0.84286 0.99075 0.93707 1.44080 1.02295 1.17148 1.69384 1.20640 0.94493 0.85339 0.97014 1.19342 0.90561 1.11109 1.18842 0.91856 1.25534 0.99560 1.01161 0.97654 1.70220 1.13242 1.49505 1.23285 0.85564 0.78353 0.78410 0.79431 1.20339 1.22299 1.21118 1.20125 1.04327 0.94219 0.97561 1.21370 0.95468 1.01175 0.92378 1.21610 1.00697 0.95158 0.97227 1.21481 0.94456 0.94775 0.98864 1.21429 1.03119 1.02018 0.92783 1.17967 0.95298 0.91140 0.87169 1.91508 1.76102 1.81354 1.63776 0.85391 0.94018 0.91821 0.92649 0.91688 0.89011 0.76046 0.90299 0.90433 0.94402 0.91803 0.90546 0.96822 0.97271 0.94332 0.94645 0.82340 0.81234 0.81333 0.83970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.16 9.18 113.37 1.04 0.88 16 2 O -0.36 -10.32 9.10 -148.98 -1.36 -11.67 16 3 C 0.16 5.57 0.80 -12.28 -0.01 5.56 16 4 C -0.13 -4.84 8.64 71.98 0.62 -4.22 16 5 C 0.49 20.33 5.44 87.66 0.48 20.81 16 6 O -0.57 -27.53 12.99 -3.05 -0.04 -27.57 16 7 N -0.68 -26.03 3.17 -442.52 -1.40 -27.43 16 8 C 0.12 4.63 2.88 44.99 0.13 4.76 16 9 H 0.03 1.61 7.58 -2.39 -0.02 1.59 16 10 C -0.14 -4.17 9.48 71.98 0.68 -3.48 16 11 C 0.14 5.41 5.33 86.38 0.46 5.87 16 12 N -0.61 -29.31 2.77 -726.94 -2.02 -31.33 16 13 C 0.17 7.91 7.64 127.77 0.98 8.89 16 14 C -0.27 -14.87 9.62 84.03 0.81 -14.06 16 15 H 0.06 3.48 7.90 -2.91 -0.02 3.46 16 16 C -0.04 -2.41 4.94 84.86 0.42 -2.00 16 17 N -0.92 -54.41 11.10 21.65 0.24 -54.17 16 18 Si 0.95 46.67 29.60 68.60 2.03 48.70 16 19 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 20 H -0.30 -14.65 7.11 99.48 0.71 -13.95 16 21 H -0.28 -13.85 7.11 99.48 0.71 -13.14 16 22 C -0.16 -5.05 4.43 -19.82 -0.09 -5.13 16 23 C -0.09 -1.94 7.69 22.26 0.17 -1.76 16 24 C -0.13 -2.15 10.04 22.27 0.22 -1.93 16 25 C -0.08 -1.39 10.04 22.26 0.22 -1.17 16 26 C -0.17 -4.53 10.03 22.31 0.22 -4.31 16 27 C 0.10 3.59 6.19 22.37 0.14 3.73 16 28 F -0.15 -6.51 12.91 44.97 0.58 -5.93 16 29 H 0.13 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.04 0.99 6.27 -2.39 -0.01 0.98 16 31 H 0.06 1.28 4.97 -2.39 -0.01 1.26 16 32 H 0.05 2.39 6.47 -2.39 -0.02 2.37 16 33 H 0.06 2.76 7.72 -2.39 -0.02 2.75 16 34 H 0.09 2.94 8.14 -2.39 -0.02 2.92 16 35 H 0.40 14.40 6.37 -92.71 -0.59 13.81 16 36 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.08 2.00 8.14 -2.38 -0.02 1.98 16 38 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.06 2.36 8.03 -2.39 -0.02 2.35 16 40 H 0.08 2.39 7.86 -2.39 -0.02 2.37 16 41 H 0.01 0.69 6.51 -2.39 -0.02 0.68 16 42 H 0.01 0.44 7.47 -2.39 -0.02 0.43 16 43 H 0.04 1.46 7.83 -2.39 -0.02 1.44 16 44 H 0.24 14.35 8.31 -92.71 -0.77 13.58 16 45 H 0.16 2.88 5.42 -2.91 -0.02 2.87 16 46 H 0.17 1.43 8.06 -2.91 -0.02 1.41 16 47 H 0.17 1.66 8.06 -2.91 -0.02 1.64 16 48 H 0.14 3.26 8.06 -2.91 -0.02 3.24 16 Total: -1.00 -75.44 378.93 4.92 -70.52 By element: Atomic # 1 Polarization: 26.04 SS G_CDS: 0.38 Total: 26.43 kcal Atomic # 6 Polarization: 5.94 SS G_CDS: 6.50 Total: 12.44 kcal Atomic # 7 Polarization: -109.74 SS G_CDS: -3.18 Total: -112.92 kcal Atomic # 8 Polarization: -37.84 SS G_CDS: -1.39 Total: -39.24 kcal Atomic # 9 Polarization: -6.51 SS G_CDS: 0.58 Total: -5.93 kcal Atomic # 14 Polarization: 46.67 SS G_CDS: 2.03 Total: 48.70 kcal Total: -75.44 4.92 -70.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733042994.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.729 kcal (2) G-P(sol) polarization free energy of solvation -75.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds