Wall clock time and date at job start Tue Mar 31 2020 21:09:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42899 * 1
3 3 C 1.42901 * 113.99847 * 2 1
4 4 C 1.52999 * 109.46713 * 53.95788 * 3 2 1
5 5 C 1.50701 * 109.46879 * 173.95415 * 3 2 1
6 6 O 1.21284 * 119.99546 * 145.00655 * 5 3 2
7 7 N 1.34772 * 120.00376 * 324.99941 * 5 3 2
8 8 C 1.46500 * 120.00199 * 180.02562 * 7 5 3
9 9 C 1.53003 * 109.47105 * 180.02562 * 8 7 5
10 10 H 1.09008 * 109.46495 * 294.99734 * 9 8 7
11 11 C 1.52997 * 109.46992 * 174.99950 * 9 8 7
12 12 N 1.46499 * 109.47413 * 54.99312 * 9 8 7
13 13 C 1.46500 * 119.99652 * 60.00681 * 12 9 8
14 14 C 1.36937 * 119.99933 * 240.00123 * 12 9 8
15 15 H 1.07995 * 120.00330 * 24.62789 * 14 12 9
16 16 C 1.38812 * 119.99611 * 204.62734 * 14 12 9
17 17 N 1.31618 * 120.00361 * 17.35834 * 16 14 12
18 18 Si 1.86806 * 119.99764 * 197.35828 * 16 14 12
19 19 H 1.48504 * 109.46916 * 94.98168 * 18 16 14
20 20 H 1.48496 * 109.47151 * 214.98145 * 18 16 14
21 21 H 1.48497 * 109.47211 * 334.98275 * 18 16 14
22 22 C 1.50693 * 109.47412 * 293.95717 * 3 2 1
23 23 C 1.38217 * 120.01173 * 355.99091 * 22 3 2
24 24 C 1.38228 * 120.02473 * 179.72222 * 23 22 3
25 25 C 1.38269 * 120.05001 * 0.55298 * 24 23 22
26 26 C 1.38175 * 120.02502 * 359.72510 * 25 24 23
27 27 C 1.38441 * 120.01415 * 176.26497 * 22 3 2
28 28 F 1.35100 * 120.02468 * 359.97438 * 27 22 3
29 29 H 1.08996 * 109.47194 * 52.32861 * 1 2 3
30 30 H 1.09001 * 109.46911 * 172.32923 * 1 2 3
31 31 H 1.09000 * 109.46914 * 292.32534 * 1 2 3
32 32 H 1.09000 * 109.47218 * 179.97438 * 4 3 2
33 33 H 1.08999 * 109.47482 * 299.99551 * 4 3 2
34 34 H 1.08998 * 109.47653 * 59.99968 * 4 3 2
35 35 H 0.97008 * 119.99779 * 0.02562 * 7 5 3
36 36 H 1.08992 * 109.47426 * 59.99890 * 8 7 5
37 37 H 1.09002 * 109.46612 * 299.99989 * 8 7 5
38 38 H 1.08996 * 109.47044 * 299.99531 * 11 9 8
39 39 H 1.09003 * 109.47151 * 179.97438 * 11 9 8
40 40 H 1.09007 * 109.47169 * 59.99692 * 11 9 8
41 41 H 1.09001 * 109.47524 * 85.98454 * 13 12 9
42 42 H 1.09003 * 109.46489 * 205.98731 * 13 12 9
43 43 H 1.08995 * 109.47087 * 325.98485 * 13 12 9
44 44 H 0.97001 * 120.00104 * 179.97438 * 17 16 14
45 45 H 1.08001 * 119.99124 * 359.97438 * 23 22 3
46 46 H 1.08001 * 119.97312 * 180.25407 * 24 23 22
47 47 H 1.07997 * 119.98625 * 179.74328 * 25 24 23
48 48 H 1.08003 * 120.01122 * 179.97438 * 26 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0102 1.3055 0.0000
4 6 1.4422 2.1165 1.1664
5 6 3.5053 1.1897 0.1496
6 8 4.2342 1.9744 -0.4194
7 7 4.0323 0.2142 0.9158
8 6 5.4857 0.1020 1.0617
9 6 5.8168 -1.0792 1.9761
10 1 5.4409 -0.8785 2.9794
11 6 7.3335 -1.2736 2.0291
12 7 5.1867 -2.2937 1.4525
13 6 5.5287 -2.7769 0.1124
14 6 4.2783 -2.9773 2.2157
15 1 3.7283 -2.4635 2.9902
16 6 4.0642 -4.3308 1.9937
17 7 4.9439 -5.0331 1.3117
18 14 2.5274 -5.1554 2.6631
19 1 1.4800 -5.1789 1.6106
20 1 2.8499 -6.5461 3.0717
21 1 2.0307 -4.3965 3.8389
22 6 1.6875 1.9991 -1.2983
23 6 1.0039 1.3236 -2.2917
24 6 0.7027 1.9613 -3.4805
25 6 1.0948 3.2719 -3.6818
26 6 1.7834 3.9473 -2.6924
27 6 2.0806 3.3113 -1.4988
28 9 2.7533 3.9709 -0.5305
29 1 -0.3633 0.6280 -0.8134
30 1 -0.3633 -1.0185 -0.1372
31 1 -0.3633 0.3904 0.9506
32 1 1.8858 3.1121 1.1668
33 1 0.3608 2.2003 1.0582
34 1 1.6756 1.6149 2.1055
35 1 3.4493 -0.4136 1.3707
36 1 5.8792 1.0205 1.4972
37 1 5.9377 -0.0587 0.0830
38 1 7.7093 -1.4743 1.0258
39 1 7.5694 -2.1149 2.6808
40 1 7.8023 -0.3699 2.4187
41 1 6.4171 -3.4060 0.1686
42 1 4.6972 -3.3571 -0.2877
43 1 5.7262 -1.9270 -0.5408
44 1 4.7945 -5.9790 1.1570
45 1 0.7013 0.2983 -2.1374
46 1 0.1649 1.4340 -4.2545
47 1 0.8626 3.7678 -4.6127
48 1 2.0900 4.9708 -2.8501
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001734039045.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:09:59
Heat of formation + Delta-G solvation = -62.790207 kcal
Electronic energy + Delta-G solvation = -31436.042793 eV
Core-core repulsion = 27214.208920 eV
Total energy + Delta-G solvation = -4221.833873 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 338.179 amu
Computer time = 0.95 seconds
Orbital eigenvalues (eV)
-48.79891 -40.55980 -38.70827 -37.60872 -36.63109 -33.71832 -32.54255 -31.91937
-30.82770 -29.61267 -29.23833 -27.49823 -25.96331 -25.70576 -23.92071 -23.05056
-22.82147 -21.79378 -19.76484 -19.26314 -17.76546 -17.63052 -16.85793 -16.74069
-16.06981 -15.62933 -15.45995 -15.35984 -15.13477 -14.92527 -14.59160 -14.43553
-14.09236 -13.77245 -13.34567 -13.01120 -12.94794 -12.77717 -12.62361 -12.56769
-12.35510 -12.17706 -12.04345 -11.93067 -11.65156 -11.59545 -11.38558 -11.05244
-10.85955 -10.83870 -10.73474 -10.37468 -10.23282 -9.88015 -9.82981 -9.73910
-9.59000 -8.99031 -8.69497 -8.51757 -8.44287 -6.74173 -5.75258 -3.19036
1.02234 1.12665 2.80140 3.37473 3.38828 3.44063 3.45535 3.66625
3.74760 4.23860 4.37963 4.48861 4.68650 4.74920 4.91401 5.01084
5.14855 5.22149 5.27335 5.36176 5.40152 5.44253 5.47221 5.58446
5.64636 5.67233 5.72500 5.92481 5.97006 5.99798 6.01880 6.13908
6.17926 6.24038 6.27043 6.36236 6.48122 6.78761 6.81349 6.89845
6.91989 6.97286 7.09721 7.37968 7.68572 7.79849 8.07872 8.40483
8.64737 9.22346 9.86281 10.37502 11.31400
Molecular weight = 338.18amu
Principal moments of inertia in cm(-1)
A = 0.013501 B = 0.003925 C = 0.003439
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2073.356320 B = 7131.443666 C = 8140.008721
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.011 3.989
2 O -0.354 6.354
3 C 0.144 3.856
4 C -0.180 4.180
5 C 0.529 3.471
6 O -0.539 6.539
7 N -0.687 5.687
8 C 0.105 3.895
9 C 0.157 3.843
10 H 0.068 0.932
11 C -0.155 4.155
12 N -0.589 5.589
13 C 0.164 3.836
14 C -0.259 4.259
15 H 0.067 0.933
16 C 0.008 3.992
17 N -0.900 5.900
18 Si 0.900 3.100
19 H -0.288 1.288
20 H -0.293 1.293
21 H -0.279 1.279
22 C -0.138 4.138
23 C -0.079 4.079
24 C -0.139 4.139
25 C -0.088 4.088
26 C -0.165 4.165
27 C 0.143 3.857
28 F -0.124 7.124
29 H 0.054 0.946
30 H 0.094 0.906
31 H 0.047 0.953
32 H 0.083 0.917
33 H 0.072 0.928
34 H 0.078 0.922
35 H 0.416 0.584
36 H 0.057 0.943
37 H 0.061 0.939
38 H 0.049 0.951
39 H 0.059 0.941
40 H 0.040 0.960
41 H 0.017 0.983
42 H 0.049 0.951
43 H -0.003 1.003
44 H 0.252 0.748
45 H 0.142 0.858
46 H 0.129 0.871
47 H 0.130 0.870
48 H 0.134 0.866
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.869 15.556 -5.871 19.335
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.085 4.085
2 O -0.272 6.272
3 C 0.101 3.899
4 C -0.238 4.238
5 C 0.312 3.688
6 O -0.417 6.417
7 N -0.338 5.338
8 C -0.021 4.021
9 C 0.049 3.951
10 H 0.086 0.914
11 C -0.215 4.215
12 N -0.312 5.312
13 C 0.020 3.980
14 C -0.388 4.388
15 H 0.085 0.915
16 C -0.191 4.191
17 N -0.543 5.543
18 Si 0.730 3.270
19 H -0.215 1.215
20 H -0.220 1.220
21 H -0.205 1.205
22 C -0.140 4.140
23 C -0.097 4.097
24 C -0.157 4.157
25 C -0.106 4.106
26 C -0.184 4.184
27 C 0.123 3.877
28 F -0.103 7.103
29 H 0.072 0.928
30 H 0.112 0.888
31 H 0.066 0.934
32 H 0.102 0.898
33 H 0.091 0.909
34 H 0.097 0.903
35 H 0.254 0.746
36 H 0.076 0.924
37 H 0.079 0.921
38 H 0.068 0.932
39 H 0.078 0.922
40 H 0.059 0.941
41 H 0.035 0.965
42 H 0.068 0.932
43 H 0.016 0.984
44 H 0.062 0.938
45 H 0.160 0.840
46 H 0.147 0.853
47 H 0.148 0.852
48 H 0.152 0.848
Dipole moment (debyes) X Y Z Total
from point charges -9.190 15.742 -6.251 19.270
hybrid contribution -1.044 -0.688 0.608 1.390
sum -10.234 15.054 -5.643 19.058
Atomic orbital electron populations
1.23129 0.80968 1.03464 1.00895 1.88151 1.20136 1.24289 1.94651
1.20356 0.92371 0.84776 0.92421 1.22492 1.02027 1.01756 0.97518
1.19637 0.87930 0.81726 0.79527 1.90708 1.60246 1.42873 1.47899
1.45810 1.08770 1.30683 1.48507 1.21986 0.79797 0.99054 1.01231
1.20622 0.92285 0.86776 0.95446 0.91388 1.22168 0.97263 1.00439
1.01662 1.43939 1.47793 1.25891 1.13584 1.20658 0.99550 0.93808
0.84026 1.19154 1.13353 0.90614 1.15694 0.91547 1.24981 0.98060
0.96018 1.00087 1.70093 1.33239 1.06812 1.44203 0.86319 0.83425
0.78758 0.78503 1.21530 1.21986 1.20450 1.20035 1.02850 0.93452
0.97638 1.21115 0.96223 1.00370 0.92003 1.21152 1.01937 0.95195
0.97466 1.21011 0.96642 0.94607 0.98344 1.21111 1.02811 1.01403
0.93030 1.17332 0.93567 0.89979 0.86799 1.91490 1.77394 1.80211
1.61161 0.92792 0.88809 0.93395 0.89824 0.90869 0.90349 0.74641
0.92432 0.92089 0.93208 0.92162 0.94052 0.96452 0.93184 0.98443
0.93794 0.84004 0.85283 0.85181 0.84798
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.01 0.13 9.07 101.05 0.92 1.04 16
2 O -0.35 -5.37 8.96 -35.23 -0.32 -5.68 16
3 C 0.14 2.18 0.79 -92.93 -0.07 2.10 16
4 C -0.18 -2.27 7.79 37.16 0.29 -1.98 16
5 C 0.53 9.69 6.60 -10.99 -0.07 9.62 16
6 O -0.54 -11.12 13.98 5.55 0.08 -11.04 16
7 N -0.69 -12.76 5.30 -60.29 -0.32 -13.08 16
8 C 0.11 1.95 4.90 -4.04 -0.02 1.93 16
9 C 0.16 3.12 2.87 -67.93 -0.20 2.93 16
10 H 0.07 1.33 7.87 -51.92 -0.41 0.92 16
11 C -0.16 -2.84 9.19 37.16 0.34 -2.50 16
12 N -0.59 -14.02 2.27 -173.48 -0.39 -14.42 16
13 C 0.16 4.03 8.10 59.85 0.48 4.51 16
14 C -0.26 -6.72 9.26 -15.06 -0.14 -6.85 16
15 H 0.07 1.67 7.86 -52.49 -0.41 1.26 16
16 C 0.01 0.21 4.93 -17.43 -0.09 0.13 16
17 N -0.90 -25.75 11.14 55.49 0.62 -25.14 16
18 Si 0.90 21.21 29.59 -169.99 -5.03 16.18 16
19 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16
20 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16
21 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16
22 C -0.14 -1.98 4.32 -104.56 -0.45 -2.43 16
23 C -0.08 -0.98 7.67 -39.59 -0.30 -1.28 16
24 C -0.14 -1.42 10.04 -39.57 -0.40 -1.82 16
25 C -0.09 -0.86 10.04 -39.59 -0.40 -1.25 16
26 C -0.16 -1.90 10.03 -39.52 -0.40 -2.30 16
27 C 0.14 2.04 6.18 -39.42 -0.24 1.80 16
28 F -0.12 -1.96 13.12 2.25 0.03 -1.93 16
29 H 0.05 0.52 5.14 -51.93 -0.27 0.25 16
30 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16
31 H 0.05 0.47 6.80 -51.93 -0.35 0.12 16
32 H 0.08 1.09 6.03 -51.93 -0.31 0.77 16
33 H 0.07 0.76 6.65 -51.93 -0.35 0.41 16
34 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16
35 H 0.42 7.98 7.33 -40.82 -0.30 7.68 16
36 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16
37 H 0.06 1.22 6.91 -51.93 -0.36 0.86 16
38 H 0.05 0.92 7.67 -51.93 -0.40 0.52 16
39 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16
40 H 0.04 0.63 8.14 -51.92 -0.42 0.21 16
41 H 0.02 0.45 7.81 -51.93 -0.41 0.05 16
42 H 0.05 1.33 6.96 -51.93 -0.36 0.97 16
43 H 0.00 -0.07 6.55 -51.93 -0.34 -0.41 16
44 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16
45 H 0.14 1.66 5.61 -52.49 -0.29 1.37 16
46 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16
47 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16
48 H 0.13 1.26 8.06 -52.48 -0.42 0.84 16
LS Contribution 379.88 15.07 5.72 5.72
Total: -1.00 -31.40 379.88 -7.43 -38.83
By element:
Atomic # 1 Polarization: 13.97 SS G_CDS: -7.08 Total: 6.89 kcal
Atomic # 6 Polarization: 4.39 SS G_CDS: -0.74 Total: 3.64 kcal
Atomic # 7 Polarization: -52.53 SS G_CDS: -0.10 Total: -52.63 kcal
Atomic # 8 Polarization: -16.48 SS G_CDS: -0.24 Total: -16.72 kcal
Atomic # 9 Polarization: -1.96 SS G_CDS: 0.03 Total: -1.93 kcal
Atomic # 14 Polarization: 21.21 SS G_CDS: -5.03 Total: 16.18 kcal
Total LS contribution 5.72 Total: 5.72 kcal
Total: -31.40 -7.43 -38.83 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001734039045.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -23.957 kcal
(2) G-P(sol) polarization free energy of solvation -31.404 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.361 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.429 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.833 kcal
(6) G-S(sol) free energy of system = (1) + (5) -62.790 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.95 seconds