Wall clock time and date at job start Tue Mar 31 2020 21:10:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42900 * 113.99843 * 2 1 4 4 C 1.52999 * 109.47184 * 174.09419 * 3 2 1 5 5 C 1.50700 * 109.47371 * 54.09278 * 3 2 1 6 6 O 1.21282 * 119.99964 * 215.00285 * 5 3 2 7 7 N 1.34777 * 120.00046 * 35.00214 * 5 3 2 8 8 C 1.46498 * 120.00154 * 180.02562 * 7 5 3 9 9 C 1.52995 * 109.47218 * 180.02562 * 8 7 5 10 10 H 1.08997 * 109.47060 * 294.99731 * 9 8 7 11 11 C 1.53001 * 109.47266 * 174.99528 * 9 8 7 12 12 N 1.46500 * 109.47097 * 54.99584 * 9 8 7 13 13 C 1.46502 * 120.00063 * 60.00314 * 12 9 8 14 14 C 1.36938 * 119.99887 * 239.99702 * 12 9 8 15 15 H 1.07994 * 120.00294 * 23.64531 * 14 12 9 16 16 C 1.38819 * 119.99834 * 203.63137 * 14 12 9 17 17 N 1.31618 * 120.00204 * 10.82483 * 16 14 12 18 18 Si 1.86797 * 119.99911 * 190.81659 * 16 14 12 19 19 H 1.48503 * 109.47116 * 94.96720 * 18 16 14 20 20 H 1.48501 * 109.47568 * 214.96766 * 18 16 14 21 21 H 1.48500 * 109.47284 * 334.96845 * 18 16 14 22 22 C 1.50704 * 109.46586 * 294.09256 * 3 2 1 23 23 C 1.38219 * 120.01527 * 359.13430 * 22 3 2 24 24 C 1.38222 * 120.02533 * 179.97438 * 23 22 3 25 25 C 1.38277 * 120.05168 * 0.02562 * 24 23 22 26 26 C 1.38175 * 120.02452 * 0.02562 * 25 24 23 27 27 C 1.38441 * 120.01031 * 178.85130 * 22 3 2 28 28 F 1.35106 * 120.02363 * 0.02562 * 27 22 3 29 29 H 1.08993 * 109.47449 * 53.43458 * 1 2 3 30 30 H 1.09005 * 109.47061 * 173.43508 * 1 2 3 31 31 H 1.09005 * 109.47655 * 293.43238 * 1 2 3 32 32 H 1.08998 * 109.46892 * 299.99909 * 4 3 2 33 33 H 1.09004 * 109.46805 * 59.99869 * 4 3 2 34 34 H 1.08998 * 109.46895 * 179.97438 * 4 3 2 35 35 H 0.97007 * 119.99912 * 359.97438 * 7 5 3 36 36 H 1.09000 * 109.47315 * 59.99913 * 8 7 5 37 37 H 1.09002 * 109.46563 * 299.99768 * 8 7 5 38 38 H 1.08997 * 109.47247 * 300.00089 * 11 9 8 39 39 H 1.08997 * 109.47128 * 179.97438 * 11 9 8 40 40 H 1.09002 * 109.46950 * 59.99785 * 11 9 8 41 41 H 1.09003 * 109.47174 * 92.57737 * 13 12 9 42 42 H 1.09002 * 109.46922 * 212.57606 * 13 12 9 43 43 H 1.08996 * 109.46851 * 332.57265 * 13 12 9 44 44 H 0.96999 * 120.00223 * 179.97438 * 17 16 14 45 45 H 1.07999 * 119.98786 * 359.97438 * 23 22 3 46 46 H 1.08001 * 119.97478 * 180.02562 * 24 23 22 47 47 H 1.07993 * 119.98433 * 179.97438 * 25 24 23 48 48 H 1.07993 * 120.01267 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5284 1.1878 0.1484 5 6 1.4533 2.1033 1.1508 6 8 1.2669 3.2955 1.0282 7 7 1.1623 1.4921 2.3162 8 6 0.6204 2.2676 3.4348 9 6 0.3808 1.3415 4.6287 10 1 -0.3945 0.6177 4.3773 11 6 -0.0665 2.1697 5.8350 12 7 1.6216 0.6344 4.9550 13 6 2.8193 1.3908 5.3287 14 6 1.6620 -0.7337 4.9108 15 1 0.9577 -1.2752 4.2967 16 6 2.6084 -1.4246 5.6551 17 7 3.3233 -0.7917 6.5610 18 14 2.8672 -3.2526 5.3711 19 1 3.9885 -3.4517 4.4180 20 1 3.1910 -3.9131 6.6612 21 1 1.6279 -3.8465 4.8084 22 6 1.6845 2.0002 -1.2971 23 6 0.9426 1.3476 -2.2637 24 6 0.6434 1.9848 -3.4532 25 6 1.0862 3.2753 -3.6780 26 6 1.8290 3.9292 -2.7136 27 6 2.1234 3.2944 -1.5187 28 9 2.8443 3.9350 -0.5725 29 1 -0.3634 0.6122 -0.8253 30 1 -0.3633 -1.0210 -0.1175 31 1 -0.3634 0.4087 0.9429 32 1 3.7639 0.6853 1.0865 33 1 3.9312 0.6108 -0.6840 34 1 3.9717 2.1836 0.1480 35 1 1.3110 0.5385 2.4141 36 1 -0.3219 2.7268 3.1358 37 1 1.3307 3.0453 3.7154 38 1 0.7088 2.8934 6.0864 39 1 -0.2376 1.5098 6.6854 40 1 -0.9897 2.6958 5.5922 41 1 2.8574 1.4986 6.4127 42 1 3.7067 0.8593 4.9850 43 1 2.7848 2.3773 4.8664 44 1 3.9844 -1.2745 7.0813 45 1 0.5966 0.3396 -2.0894 46 1 0.0633 1.4743 -4.2077 47 1 0.8522 3.7720 -4.6079 48 1 2.1751 4.9370 -2.8895 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734039047.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:10:04 Heat of formation + Delta-G solvation = -58.079604 kcal Electronic energy + Delta-G solvation = -31577.457711 eV Core-core repulsion = 27355.828105 eV Total energy + Delta-G solvation = -4221.629606 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -48.70597 -40.72628 -38.72641 -37.41367 -36.67439 -33.80771 -32.77258 -31.97255 -30.89916 -29.73521 -29.29139 -26.52388 -26.04670 -26.01783 -24.22258 -23.06666 -22.86609 -21.90882 -19.82081 -19.29422 -17.85381 -17.59608 -16.93022 -16.66381 -16.08620 -15.62856 -15.44674 -15.33143 -15.11328 -14.94045 -14.79151 -14.22076 -14.17426 -13.77950 -13.39767 -12.95845 -12.83184 -12.72509 -12.50871 -12.44838 -12.29823 -12.22748 -12.10001 -11.89823 -11.80550 -11.48832 -11.42374 -11.11648 -11.01531 -10.82720 -10.75795 -10.39299 -10.28558 -10.24689 -9.91078 -9.78745 -9.29872 -9.00699 -8.70037 -8.58684 -8.48961 -6.79673 -5.75575 -3.23472 1.00185 1.10773 2.81228 3.27475 3.36282 3.42905 3.44079 3.55707 3.71170 4.27347 4.39257 4.45408 4.65569 4.76969 4.93956 5.00048 5.12706 5.23869 5.32883 5.36221 5.40157 5.42471 5.57741 5.61787 5.65190 5.73974 5.77290 5.90988 5.93843 5.99745 6.07628 6.12717 6.17924 6.20475 6.24559 6.29822 6.42577 6.75036 6.77415 6.84096 6.85531 6.90285 7.04362 7.39467 7.70938 7.78510 7.98413 8.36328 8.56061 9.20316 9.82692 10.32571 11.29106 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.015484 B = 0.003690 C = 0.003383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1807.861130 B = 7585.966976 C = 8275.327050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.002 4.002 2 O -0.357 6.357 3 C 0.149 3.851 4 C -0.140 4.140 5 C 0.489 3.511 6 O -0.537 6.537 7 N -0.695 5.695 8 C 0.105 3.895 9 C 0.158 3.842 10 H 0.067 0.933 11 C -0.156 4.156 12 N -0.593 5.593 13 C 0.166 3.834 14 C -0.260 4.260 15 H 0.068 0.932 16 C 0.007 3.993 17 N -0.904 5.904 18 Si 0.903 3.097 19 H -0.288 1.288 20 H -0.292 1.292 21 H -0.279 1.279 22 C -0.141 4.141 23 C -0.084 4.084 24 C -0.142 4.142 25 C -0.088 4.088 26 C -0.166 4.166 27 C 0.147 3.853 28 F -0.120 7.120 29 H 0.057 0.943 30 H 0.095 0.905 31 H 0.054 0.946 32 H 0.082 0.918 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.415 0.585 36 H 0.056 0.944 37 H 0.062 0.938 38 H 0.049 0.951 39 H 0.059 0.941 40 H 0.040 0.960 41 H 0.025 0.975 42 H 0.045 0.955 43 H -0.004 1.004 44 H 0.252 0.748 45 H 0.143 0.857 46 H 0.128 0.872 47 H 0.130 0.870 48 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.294 5.514 -18.292 19.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 O -0.276 6.276 3 C 0.106 3.894 4 C -0.197 4.197 5 C 0.273 3.727 6 O -0.415 6.415 7 N -0.346 5.346 8 C -0.021 4.021 9 C 0.049 3.951 10 H 0.085 0.915 11 C -0.216 4.216 12 N -0.316 5.316 13 C 0.022 3.978 14 C -0.389 4.389 15 H 0.086 0.914 16 C -0.192 4.192 17 N -0.548 5.548 18 Si 0.733 3.267 19 H -0.215 1.215 20 H -0.219 1.219 21 H -0.204 1.204 22 C -0.142 4.142 23 C -0.102 4.102 24 C -0.160 4.160 25 C -0.106 4.106 26 C -0.184 4.184 27 C 0.127 3.873 28 F -0.098 7.098 29 H 0.075 0.925 30 H 0.114 0.886 31 H 0.072 0.928 32 H 0.101 0.899 33 H 0.094 0.906 34 H 0.101 0.899 35 H 0.253 0.747 36 H 0.074 0.926 37 H 0.080 0.920 38 H 0.068 0.932 39 H 0.078 0.922 40 H 0.059 0.941 41 H 0.044 0.956 42 H 0.063 0.937 43 H 0.015 0.985 44 H 0.062 0.938 45 H 0.161 0.839 46 H 0.146 0.854 47 H 0.148 0.852 48 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -5.143 6.132 -18.170 19.855 hybrid contribution 0.221 -1.080 0.314 1.146 sum -4.922 5.052 -17.856 19.199 Atomic orbital electron populations 1.23336 0.80921 1.03583 1.01925 1.88055 1.20115 1.24831 1.94559 1.20459 0.96421 0.82939 0.89627 1.21843 0.89368 1.04001 1.04535 1.20810 0.78940 0.88356 0.84608 1.90702 1.52983 1.14787 1.82981 1.45946 1.63285 1.13844 1.11547 1.21993 0.97679 0.95295 0.87119 1.20605 0.90335 0.92938 0.91181 0.91459 1.22178 0.99477 1.00115 0.99783 1.43963 1.04922 1.02596 1.80120 1.20714 0.88896 0.90654 0.97567 1.19193 1.16556 0.81587 1.21603 0.91425 1.25041 1.00195 0.97721 0.96266 1.70068 1.26158 1.34932 1.23659 0.86267 0.78095 0.85275 0.77052 1.21456 1.21861 1.20442 1.20071 1.02503 0.94326 0.97338 1.21146 0.95990 1.00610 0.92444 1.21128 1.01920 0.95450 0.97475 1.21011 0.96269 0.94727 0.98593 1.21137 1.02638 1.01372 0.93290 1.17358 0.93410 0.90102 0.86415 1.91547 1.74273 1.81021 1.62937 0.92481 0.88646 0.92760 0.89863 0.90553 0.89936 0.74711 0.92579 0.91991 0.93156 0.92175 0.94052 0.95644 0.93668 0.98542 0.93753 0.83912 0.85355 0.85210 0.84772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.02 9.17 101.05 0.93 0.91 16 2 O -0.36 -5.14 9.13 -35.23 -0.32 -5.47 16 3 C 0.15 2.26 0.80 -92.92 -0.07 2.19 16 4 C -0.14 -2.04 8.63 37.16 0.32 -1.72 16 5 C 0.49 8.65 5.48 -10.99 -0.06 8.59 16 6 O -0.54 -10.75 13.44 5.56 0.07 -10.68 16 7 N -0.69 -12.37 4.14 -60.30 -0.25 -12.62 16 8 C 0.10 1.89 4.93 -4.05 -0.02 1.87 16 9 C 0.16 3.05 2.87 -67.93 -0.20 2.85 16 10 H 0.07 1.28 7.87 -51.93 -0.41 0.87 16 11 C -0.16 -2.77 9.19 37.16 0.34 -2.43 16 12 N -0.59 -13.82 2.29 -173.49 -0.40 -14.21 16 13 C 0.17 4.00 8.01 59.85 0.48 4.48 16 14 C -0.26 -6.64 9.32 -15.06 -0.14 -6.78 16 15 H 0.07 1.67 7.82 -52.49 -0.41 1.26 16 16 C 0.01 0.18 5.12 -17.43 -0.09 0.09 16 17 N -0.90 -25.57 10.64 55.49 0.59 -24.97 16 18 Si 0.90 21.16 29.57 -169.99 -5.03 16.14 16 19 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 21 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 22 C -0.14 -1.97 4.44 -104.55 -0.46 -2.43 16 23 C -0.08 -0.96 7.70 -39.59 -0.30 -1.26 16 24 C -0.14 -1.33 10.04 -39.57 -0.40 -1.73 16 25 C -0.09 -0.82 10.04 -39.59 -0.40 -1.22 16 26 C -0.17 -1.89 10.03 -39.51 -0.40 -2.29 16 27 C 0.15 2.12 6.18 -39.42 -0.24 1.87 16 28 F -0.12 -1.99 12.94 2.25 0.03 -1.96 16 29 H 0.06 0.63 4.88 -51.93 -0.25 0.37 16 30 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 31 H 0.05 0.73 6.27 -51.93 -0.33 0.40 16 32 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 33 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.08 1.21 6.40 -51.93 -0.33 0.88 16 35 H 0.42 7.70 7.08 -40.82 -0.29 7.41 16 36 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.06 1.21 6.87 -51.93 -0.36 0.85 16 38 H 0.05 0.91 7.67 -51.93 -0.40 0.51 16 39 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 40 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.03 0.66 7.49 -51.93 -0.39 0.28 16 42 H 0.04 1.18 7.15 -51.93 -0.37 0.81 16 43 H 0.00 -0.09 6.53 -51.93 -0.34 -0.43 16 44 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 45 H 0.14 1.45 5.31 -52.49 -0.28 1.17 16 46 H 0.13 0.85 8.06 -52.49 -0.42 0.42 16 47 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 48 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 LS Contribution 378.09 15.07 5.70 5.70 Total: -1.00 -30.53 378.09 -7.41 -37.94 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: -7.09 Total: 7.16 kcal Atomic # 6 Polarization: 3.70 SS G_CDS: -0.72 Total: 2.98 kcal Atomic # 7 Polarization: -51.75 SS G_CDS: -0.06 Total: -51.81 kcal Atomic # 8 Polarization: -15.90 SS G_CDS: -0.25 Total: -16.14 kcal Atomic # 9 Polarization: -1.99 SS G_CDS: 0.03 Total: -1.96 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.03 Total: 16.14 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -30.53 -7.41 -37.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734039047.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.140 kcal (2) G-P(sol) polarization free energy of solvation -30.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds