Wall clock time and date at job start Tue Mar 31 2020 21:10:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42900 * 113.99843 * 2 1 4 4 C 1.52999 * 109.47184 * 174.09419 * 3 2 1 5 5 C 1.50700 * 109.47371 * 54.09278 * 3 2 1 6 6 O 1.21282 * 119.99964 * 215.00285 * 5 3 2 7 7 N 1.34777 * 120.00046 * 35.00214 * 5 3 2 8 8 C 1.46498 * 120.00154 * 180.02562 * 7 5 3 9 9 C 1.52995 * 109.47218 * 180.02562 * 8 7 5 10 10 H 1.08997 * 109.47060 * 294.99731 * 9 8 7 11 11 C 1.53001 * 109.47266 * 174.99528 * 9 8 7 12 12 N 1.46500 * 109.47097 * 54.99584 * 9 8 7 13 13 C 1.46502 * 120.00063 * 60.00314 * 12 9 8 14 14 C 1.36938 * 119.99887 * 239.99702 * 12 9 8 15 15 H 1.07994 * 120.00294 * 23.64531 * 14 12 9 16 16 C 1.38819 * 119.99834 * 203.63137 * 14 12 9 17 17 N 1.31618 * 120.00204 * 10.82483 * 16 14 12 18 18 Si 1.86797 * 119.99911 * 190.81659 * 16 14 12 19 19 H 1.48503 * 109.47116 * 94.96720 * 18 16 14 20 20 H 1.48501 * 109.47568 * 214.96766 * 18 16 14 21 21 H 1.48500 * 109.47284 * 334.96845 * 18 16 14 22 22 C 1.50704 * 109.46586 * 294.09256 * 3 2 1 23 23 C 1.38219 * 120.01527 * 359.13430 * 22 3 2 24 24 C 1.38222 * 120.02533 * 179.97438 * 23 22 3 25 25 C 1.38277 * 120.05168 * 0.02562 * 24 23 22 26 26 C 1.38175 * 120.02452 * 0.02562 * 25 24 23 27 27 C 1.38441 * 120.01031 * 178.85130 * 22 3 2 28 28 F 1.35106 * 120.02363 * 0.02562 * 27 22 3 29 29 H 1.08993 * 109.47449 * 53.43458 * 1 2 3 30 30 H 1.09005 * 109.47061 * 173.43508 * 1 2 3 31 31 H 1.09005 * 109.47655 * 293.43238 * 1 2 3 32 32 H 1.08998 * 109.46892 * 299.99909 * 4 3 2 33 33 H 1.09004 * 109.46805 * 59.99869 * 4 3 2 34 34 H 1.08998 * 109.46895 * 179.97438 * 4 3 2 35 35 H 0.97007 * 119.99912 * 359.97438 * 7 5 3 36 36 H 1.09000 * 109.47315 * 59.99913 * 8 7 5 37 37 H 1.09002 * 109.46563 * 299.99768 * 8 7 5 38 38 H 1.08997 * 109.47247 * 300.00089 * 11 9 8 39 39 H 1.08997 * 109.47128 * 179.97438 * 11 9 8 40 40 H 1.09002 * 109.46950 * 59.99785 * 11 9 8 41 41 H 1.09003 * 109.47174 * 92.57737 * 13 12 9 42 42 H 1.09002 * 109.46922 * 212.57606 * 13 12 9 43 43 H 1.08996 * 109.46851 * 332.57265 * 13 12 9 44 44 H 0.96999 * 120.00223 * 179.97438 * 17 16 14 45 45 H 1.07999 * 119.98786 * 359.97438 * 23 22 3 46 46 H 1.08001 * 119.97478 * 180.02562 * 24 23 22 47 47 H 1.07993 * 119.98433 * 179.97438 * 25 24 23 48 48 H 1.07993 * 120.01267 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5284 1.1878 0.1484 5 6 1.4533 2.1033 1.1508 6 8 1.2669 3.2955 1.0282 7 7 1.1623 1.4921 2.3162 8 6 0.6204 2.2676 3.4348 9 6 0.3808 1.3415 4.6287 10 1 -0.3945 0.6177 4.3773 11 6 -0.0665 2.1697 5.8350 12 7 1.6216 0.6344 4.9550 13 6 2.8193 1.3908 5.3287 14 6 1.6620 -0.7337 4.9108 15 1 0.9577 -1.2752 4.2967 16 6 2.6084 -1.4246 5.6551 17 7 3.3233 -0.7917 6.5610 18 14 2.8672 -3.2526 5.3711 19 1 3.9885 -3.4517 4.4180 20 1 3.1910 -3.9131 6.6612 21 1 1.6279 -3.8465 4.8084 22 6 1.6845 2.0002 -1.2971 23 6 0.9426 1.3476 -2.2637 24 6 0.6434 1.9848 -3.4532 25 6 1.0862 3.2753 -3.6780 26 6 1.8290 3.9292 -2.7136 27 6 2.1234 3.2944 -1.5187 28 9 2.8443 3.9350 -0.5725 29 1 -0.3634 0.6122 -0.8253 30 1 -0.3633 -1.0210 -0.1175 31 1 -0.3634 0.4087 0.9429 32 1 3.7639 0.6853 1.0865 33 1 3.9312 0.6108 -0.6840 34 1 3.9717 2.1836 0.1480 35 1 1.3110 0.5385 2.4141 36 1 -0.3219 2.7268 3.1358 37 1 1.3307 3.0453 3.7154 38 1 0.7088 2.8934 6.0864 39 1 -0.2376 1.5098 6.6854 40 1 -0.9897 2.6958 5.5922 41 1 2.8574 1.4986 6.4127 42 1 3.7067 0.8593 4.9850 43 1 2.7848 2.3773 4.8664 44 1 3.9844 -1.2745 7.0813 45 1 0.5966 0.3396 -2.0894 46 1 0.0633 1.4743 -4.2077 47 1 0.8522 3.7720 -4.6079 48 1 2.1751 4.9370 -2.8895 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734039047.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:10:03 Heat of formation + Delta-G solvation = -75.961101 kcal Electronic energy + Delta-G solvation = -31578.233111 eV Core-core repulsion = 27355.828105 eV Total energy + Delta-G solvation = -4222.405006 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.79524 -41.89867 -39.84629 -38.58612 -38.26737 -35.46157 -33.85534 -33.69616 -31.76542 -31.18260 -30.60082 -28.03241 -27.66860 -27.30510 -25.41190 -24.85530 -23.73610 -23.00930 -21.24121 -20.78089 -19.05857 -18.79682 -18.68249 -17.70595 -17.23152 -17.07729 -16.77793 -16.56224 -16.45005 -15.95547 -15.85997 -15.81913 -15.43721 -15.12887 -14.65044 -14.55297 -14.41475 -14.01009 -13.85721 -13.67947 -13.51663 -13.34926 -13.24405 -13.07376 -13.07070 -12.85404 -12.75357 -12.67740 -12.55736 -12.39202 -12.28128 -12.09662 -12.04939 -11.80334 -11.53536 -11.31872 -10.61852 -10.53686 -9.98603 -9.90662 -9.58323 -8.77154 -7.78969 -5.27726 0.13862 0.25505 1.44867 1.49763 1.51708 1.59160 2.09678 2.52827 2.56131 2.66143 3.32477 3.37216 3.41589 3.57760 3.67100 3.78954 3.92254 4.01625 4.14455 4.32251 4.35566 4.38411 4.42206 4.46272 4.52172 4.55122 4.60712 4.67904 4.72914 4.80853 4.86122 4.90108 4.97472 5.01191 5.13096 5.19099 5.20640 5.33449 5.33940 5.39428 5.44045 5.52387 5.67816 5.72856 5.84694 5.94815 6.35899 6.55685 7.13699 7.18975 7.88269 8.34632 9.25080 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.015484 B = 0.003690 C = 0.003383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1807.861130 B = 7585.966976 C = 8275.327050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.006 4.006 2 O -0.365 6.365 3 C 0.153 3.847 4 C -0.138 4.138 5 C 0.488 3.512 6 O -0.562 6.562 7 N -0.696 5.696 8 C 0.115 3.885 9 C 0.158 3.842 10 H 0.075 0.925 11 C -0.148 4.148 12 N -0.602 5.602 13 C 0.188 3.812 14 C -0.255 4.255 15 H 0.079 0.921 16 C -0.049 4.049 17 N -0.939 5.939 18 Si 0.963 3.037 19 H -0.291 1.291 20 H -0.302 1.302 21 H -0.263 1.263 22 C -0.160 4.160 23 C -0.091 4.091 24 C -0.131 4.131 25 C -0.079 4.079 26 C -0.171 4.171 27 C 0.109 3.891 28 F -0.144 7.144 29 H 0.069 0.931 30 H 0.120 0.880 31 H 0.038 0.962 32 H 0.066 0.934 33 H 0.094 0.906 34 H 0.074 0.926 35 H 0.412 0.588 36 H 0.074 0.926 37 H 0.045 0.955 38 H 0.042 0.958 39 H 0.043 0.957 40 H 0.076 0.924 41 H 0.000 1.000 42 H 0.016 0.984 43 H 0.013 0.987 44 H 0.245 0.755 45 H 0.155 0.845 46 H 0.165 0.835 47 H 0.168 0.832 48 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.409 4.976 -21.367 23.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 O -0.283 6.283 3 C 0.110 3.890 4 C -0.195 4.195 5 C 0.273 3.727 6 O -0.441 6.441 7 N -0.347 5.347 8 C -0.010 4.010 9 C 0.051 3.949 10 H 0.093 0.907 11 C -0.207 4.207 12 N -0.325 5.325 13 C 0.043 3.957 14 C -0.385 4.385 15 H 0.096 0.904 16 C -0.245 4.245 17 N -0.586 5.586 18 Si 0.792 3.208 19 H -0.218 1.218 20 H -0.229 1.229 21 H -0.188 1.188 22 C -0.162 4.162 23 C -0.108 4.108 24 C -0.148 4.148 25 C -0.097 4.097 26 C -0.190 4.190 27 C 0.090 3.910 28 F -0.122 7.122 29 H 0.088 0.912 30 H 0.139 0.861 31 H 0.057 0.943 32 H 0.085 0.915 33 H 0.113 0.887 34 H 0.093 0.907 35 H 0.249 0.751 36 H 0.092 0.908 37 H 0.063 0.937 38 H 0.061 0.939 39 H 0.062 0.938 40 H 0.095 0.905 41 H 0.018 0.982 42 H 0.035 0.965 43 H 0.031 0.969 44 H 0.054 0.946 45 H 0.172 0.828 46 H 0.183 0.817 47 H 0.185 0.815 48 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -7.298 5.599 -21.271 23.174 hybrid contribution 0.785 -0.850 1.157 1.636 sum -6.513 4.749 -20.114 21.669 Atomic orbital electron populations 1.23514 0.79678 1.05354 1.01601 1.88041 1.21480 1.24238 1.94564 1.20327 0.96146 0.83068 0.89454 1.21810 0.89724 1.03614 1.04371 1.21332 0.78137 0.88246 0.84992 1.90680 1.53982 1.15997 1.83479 1.45969 1.63451 1.13539 1.11721 1.21821 0.98002 0.94455 0.86749 1.20766 0.88720 0.93280 0.92134 0.90676 1.22061 1.00894 0.99522 0.98238 1.44091 1.06147 1.02314 1.79967 1.20338 0.88481 0.91066 0.95855 1.19554 1.15812 0.82653 1.20450 0.90368 1.25746 1.00684 1.01410 0.96623 1.70234 1.27104 1.36147 1.25070 0.85302 0.78247 0.81013 0.76198 1.21780 1.22908 1.18766 1.20069 1.04221 0.94522 0.97344 1.21377 0.95556 1.01169 0.92711 1.21588 1.00761 0.95375 0.97125 1.21483 0.94383 0.94668 0.99121 1.21436 1.02720 1.02125 0.92688 1.17812 0.94984 0.90891 0.87325 1.91477 1.75135 1.81526 1.64108 0.91236 0.86135 0.94317 0.91500 0.88721 0.90737 0.75105 0.90830 0.93683 0.93929 0.93819 0.90483 0.98205 0.96517 0.96855 0.94580 0.82782 0.81721 0.81487 0.83503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.14 9.17 113.37 1.04 0.90 16 2 O -0.36 -10.11 9.13 -148.98 -1.36 -11.47 16 3 C 0.15 4.64 0.80 -12.28 -0.01 4.63 16 4 C -0.14 -4.12 8.63 71.98 0.62 -3.50 16 5 C 0.49 17.37 5.48 87.66 0.48 17.85 16 6 O -0.56 -22.85 13.44 -3.04 -0.04 -22.89 16 7 N -0.70 -24.76 4.14 -463.07 -1.92 -26.68 16 8 C 0.12 4.09 4.93 86.38 0.43 4.51 16 9 C 0.16 5.97 2.87 44.99 0.13 6.10 16 10 H 0.08 2.74 7.87 -2.39 -0.02 2.72 16 11 C -0.15 -5.09 9.19 71.98 0.66 -4.43 16 12 N -0.60 -28.24 2.29 -702.78 -1.61 -29.85 16 13 C 0.19 9.33 8.01 127.77 1.02 10.35 16 14 C -0.25 -13.00 9.32 84.03 0.78 -12.21 16 15 H 0.08 3.78 7.82 -2.91 -0.02 3.75 16 16 C -0.05 -2.67 5.12 84.86 0.43 -2.24 16 17 N -0.94 -54.65 10.64 21.65 0.23 -54.42 16 18 Si 0.96 43.84 29.57 68.60 2.03 45.87 16 19 H -0.29 -13.25 7.11 99.48 0.71 -12.55 16 20 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 21 H -0.26 -11.17 7.11 99.48 0.71 -10.47 16 22 C -0.16 -4.33 4.44 -19.82 -0.09 -4.42 16 23 C -0.09 -1.83 7.70 22.26 0.17 -1.66 16 24 C -0.13 -1.91 10.04 22.28 0.22 -1.69 16 25 C -0.08 -1.17 10.04 22.26 0.22 -0.94 16 26 C -0.17 -3.61 10.03 22.31 0.22 -3.39 16 27 C 0.11 3.12 6.18 22.38 0.14 3.26 16 28 F -0.14 -4.97 12.94 44.97 0.58 -4.39 16 29 H 0.07 1.37 4.88 -2.39 -0.01 1.36 16 30 H 0.12 2.03 8.14 -2.38 -0.02 2.01 16 31 H 0.04 0.98 6.27 -2.38 -0.01 0.97 16 32 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 33 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 34 H 0.07 2.31 6.40 -2.39 -0.02 2.30 16 35 H 0.41 15.25 7.08 -92.70 -0.66 14.59 16 36 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 37 H 0.04 1.76 6.87 -2.39 -0.02 1.74 16 38 H 0.04 1.52 7.67 -2.39 -0.02 1.50 16 39 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 41 H 0.00 -0.02 7.49 -2.39 -0.02 -0.04 16 42 H 0.02 0.89 7.15 -2.39 -0.02 0.87 16 43 H 0.01 0.60 6.53 -2.39 -0.02 0.58 16 44 H 0.24 14.04 8.31 -92.71 -0.77 13.27 16 45 H 0.15 2.67 5.31 -2.91 -0.02 2.65 16 46 H 0.17 1.23 8.06 -2.91 -0.02 1.20 16 47 H 0.17 1.22 8.06 -2.91 -0.02 1.19 16 48 H 0.15 2.57 8.06 -2.91 -0.02 2.55 16 Total: -1.00 -68.04 378.09 4.72 -63.32 By element: Atomic # 1 Polarization: 27.04 SS G_CDS: 0.32 Total: 27.36 kcal Atomic # 6 Polarization: 6.65 SS G_CDS: 6.48 Total: 13.13 kcal Atomic # 7 Polarization: -107.65 SS G_CDS: -3.29 Total: -110.94 kcal Atomic # 8 Polarization: -32.95 SS G_CDS: -1.40 Total: -34.35 kcal Atomic # 9 Polarization: -4.97 SS G_CDS: 0.58 Total: -4.39 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Total: -68.04 4.72 -63.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734039047.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.645 kcal (2) G-P(sol) polarization free energy of solvation -68.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds