Wall clock time and date at job start Tue Mar 31 2020 21:10:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42897 * 113.99919 * 2 1 4 4 C 1.52999 * 109.47320 * 305.70897 * 3 2 1 5 5 C 1.50706 * 109.47170 * 185.70779 * 3 2 1 6 6 O 1.21277 * 120.00043 * 214.99553 * 5 3 2 7 7 N 1.34782 * 119.99720 * 34.72728 * 5 3 2 8 8 C 1.46497 * 119.99845 * 180.27584 * 7 5 3 9 9 C 1.52999 * 109.46771 * 179.97438 * 8 7 5 10 10 H 1.09000 * 109.47822 * 65.00015 * 9 8 7 11 11 C 1.53003 * 109.46935 * 184.99744 * 9 8 7 12 12 N 1.46500 * 109.47177 * 304.99567 * 9 8 7 13 13 C 1.46498 * 120.00056 * 300.00246 * 12 9 8 14 14 C 1.36932 * 120.00197 * 120.00408 * 12 9 8 15 15 H 1.07998 * 120.00127 * 24.10344 * 14 12 9 16 16 C 1.38816 * 120.00419 * 204.10930 * 14 12 9 17 17 N 1.31621 * 119.99708 * 12.64071 * 16 14 12 18 18 Si 1.86799 * 120.00243 * 192.64476 * 16 14 12 19 19 H 1.48498 * 109.47137 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47079 * 119.99662 * 18 16 14 21 21 H 1.48503 * 109.46793 * 240.00070 * 18 16 14 22 22 C 1.50701 * 109.47244 * 65.71140 * 3 2 1 23 23 C 1.38220 * 120.01472 * 5.45628 * 22 3 2 24 24 C 1.38217 * 120.02789 * 179.97438 * 23 22 3 25 25 C 1.38271 * 120.04927 * 0.02562 * 24 23 22 26 26 C 1.38174 * 120.02667 * 0.02562 * 25 24 23 27 27 C 1.38441 * 120.00957 * 185.17878 * 22 3 2 28 28 F 1.35099 * 120.02759 * 0.02562 * 27 22 3 29 29 H 1.08992 * 109.47740 * 306.76870 * 1 2 3 30 30 H 1.09003 * 109.46619 * 66.76919 * 1 2 3 31 31 H 1.08995 * 109.47085 * 186.75952 * 1 2 3 32 32 H 1.09000 * 109.47084 * 300.00241 * 4 3 2 33 33 H 1.09002 * 109.46734 * 59.99972 * 4 3 2 34 34 H 1.08993 * 109.47319 * 180.02562 * 4 3 2 35 35 H 0.97006 * 119.99817 * 0.27259 * 7 5 3 36 36 H 1.09005 * 109.47103 * 299.99331 * 8 7 5 37 37 H 1.08995 * 109.47261 * 59.99654 * 8 7 5 38 38 H 1.08997 * 109.47182 * 179.97438 * 11 9 8 39 39 H 1.08996 * 109.47331 * 299.99932 * 11 9 8 40 40 H 1.08997 * 109.47072 * 60.00178 * 11 9 8 41 41 H 1.09001 * 109.47186 * 88.84599 * 13 12 9 42 42 H 1.09003 * 109.47388 * 208.84097 * 13 12 9 43 43 H 1.09000 * 109.47318 * 328.84428 * 13 12 9 44 44 H 0.96996 * 120.00314 * 180.02562 * 17 16 14 45 45 H 1.08004 * 119.98168 * 0.02562 * 23 22 3 46 46 H 1.07990 * 119.97615 * 180.02562 * 24 23 22 47 47 H 1.08002 * 119.98445 * 179.97438 * 25 24 23 48 48 H 1.08002 * 120.01048 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.4485 2.1138 -1.1713 5 6 3.5061 1.1893 -0.1413 6 8 4.2320 1.9754 0.4297 7 7 4.0374 0.2086 -0.8980 8 6 5.4917 0.0921 -1.0305 9 6 5.8277 -1.0946 -1.9358 10 1 5.4612 -0.8983 -2.9434 11 6 7.3444 -1.2931 -1.9746 12 7 5.1901 -2.3049 -1.4115 13 6 5.5191 -2.7819 -0.0660 14 6 4.2867 -2.9903 -2.1789 15 1 4.3174 -2.9047 -3.2551 16 6 3.3311 -3.7951 -1.5738 17 7 3.1270 -3.7121 -0.2762 18 14 2.3350 -4.9959 -2.6011 19 1 2.7525 -4.8960 -4.0227 20 1 2.5690 -6.3784 -2.1120 21 1 0.8914 -4.6674 -2.4854 22 6 1.6806 2.0021 1.2950 23 6 1.0181 1.3198 2.2980 24 6 0.7161 1.9583 3.4861 25 6 1.0759 3.2803 3.6726 26 6 1.7374 3.9647 2.6710 27 6 2.0465 3.3240 1.4828 28 9 2.6986 3.9904 0.5051 29 1 -0.3634 0.6151 0.8231 30 1 -0.3633 0.4054 -0.9444 31 1 -0.3633 -1.0205 0.1210 32 1 1.6869 1.6099 -2.1080 33 1 0.3665 2.1978 -1.0690 34 1 1.8921 3.1094 -1.1715 35 1 3.4568 -0.4201 -1.3547 36 1 5.8913 1.0073 -1.4673 37 1 5.9347 -0.0647 -0.0471 38 1 7.5838 -2.1388 -2.6192 39 1 7.8188 -0.3927 -2.3647 40 1 7.7109 -1.4895 -0.9671 41 1 4.8519 -2.3148 0.6584 42 1 5.3992 -3.8645 -0.0248 43 1 6.5510 -2.5214 0.1697 44 1 2.4596 -4.2747 0.1468 45 1 0.7369 0.2870 2.1536 46 1 0.1988 1.4243 4.2693 47 1 0.8391 3.7783 4.6012 48 1 2.0179 4.9974 2.8167 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734039051.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:10:14 Heat of formation + Delta-G solvation = -60.827289 kcal Electronic energy + Delta-G solvation = -31771.086816 eV Core-core repulsion = 27549.338062 eV Total energy + Delta-G solvation = -4221.748754 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -48.70432 -40.36600 -38.55064 -37.41535 -36.56893 -33.57672 -32.35818 -31.92087 -30.69481 -29.50088 -29.14422 -27.29346 -25.96191 -25.61036 -23.77795 -23.00250 -22.68352 -21.64227 -19.57254 -19.20405 -17.62277 -17.43486 -16.84406 -16.60905 -15.92992 -15.45577 -15.36626 -15.23069 -15.01343 -14.77609 -14.51674 -14.25677 -13.94496 -13.67892 -13.19436 -12.93212 -12.82041 -12.70667 -12.54932 -12.41580 -12.23339 -12.04138 -11.99690 -11.85536 -11.55159 -11.46499 -11.44009 -11.04477 -10.77736 -10.66896 -10.65933 -10.35767 -10.23003 -9.81937 -9.73349 -9.59522 -9.42493 -8.84917 -8.56973 -8.51608 -8.25917 -6.71750 -5.70382 -3.16850 1.15459 1.25152 2.99411 3.36409 3.45015 3.45876 3.53912 3.87521 3.95156 4.36950 4.49162 4.53836 4.81391 4.88913 5.07435 5.17767 5.27470 5.36966 5.43626 5.45450 5.46225 5.54045 5.62567 5.67513 5.75372 5.81722 5.92579 6.02233 6.06121 6.12677 6.14076 6.15029 6.20234 6.32613 6.40350 6.40839 6.44815 6.73928 6.87905 6.91393 6.95738 7.17785 7.26002 7.43878 7.77238 7.84008 8.30081 8.42244 8.85880 9.25511 9.88609 10.39642 11.33781 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.012914 B = 0.004349 C = 0.003709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2167.716984 B = 6436.768566 C = 7546.435173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.341 6.341 3 C 0.143 3.857 4 C -0.181 4.181 5 C 0.531 3.469 6 O -0.546 6.546 7 N -0.681 5.681 8 C 0.106 3.894 9 C 0.158 3.842 10 H 0.067 0.933 11 C -0.158 4.158 12 N -0.591 5.591 13 C 0.164 3.836 14 C -0.264 4.264 15 H 0.065 0.935 16 C 0.011 3.989 17 N -0.891 5.891 18 Si 0.898 3.102 19 H -0.280 1.280 20 H -0.291 1.291 21 H -0.291 1.291 22 C -0.135 4.135 23 C -0.077 4.077 24 C -0.139 4.139 25 C -0.090 4.090 26 C -0.166 4.166 27 C 0.141 3.859 28 F -0.126 7.126 29 H 0.050 0.950 30 H 0.044 0.956 31 H 0.093 0.907 32 H 0.076 0.924 33 H 0.071 0.929 34 H 0.082 0.918 35 H 0.421 0.579 36 H 0.052 0.948 37 H 0.057 0.943 38 H 0.056 0.944 39 H 0.045 0.955 40 H 0.051 0.949 41 H 0.023 0.977 42 H 0.048 0.952 43 H -0.005 1.005 44 H 0.251 0.749 45 H 0.143 0.857 46 H 0.129 0.871 47 H 0.129 0.871 48 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.869 12.376 3.611 14.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.259 6.259 3 C 0.099 3.901 4 C -0.239 4.239 5 C 0.314 3.686 6 O -0.425 6.425 7 N -0.331 5.331 8 C -0.020 4.020 9 C 0.049 3.951 10 H 0.086 0.914 11 C -0.217 4.217 12 N -0.314 5.314 13 C 0.019 3.981 14 C -0.393 4.393 15 H 0.083 0.917 16 C -0.188 4.188 17 N -0.534 5.534 18 Si 0.728 3.272 19 H -0.205 1.205 20 H -0.218 1.218 21 H -0.218 1.218 22 C -0.136 4.136 23 C -0.094 4.094 24 C -0.158 4.158 25 C -0.108 4.108 26 C -0.185 4.185 27 C 0.121 3.879 28 F -0.104 7.104 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.111 0.889 32 H 0.095 0.905 33 H 0.090 0.910 34 H 0.101 0.899 35 H 0.259 0.741 36 H 0.071 0.929 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.064 0.936 40 H 0.070 0.930 41 H 0.041 0.959 42 H 0.067 0.933 43 H 0.013 0.987 44 H 0.061 0.939 45 H 0.161 0.839 46 H 0.147 0.853 47 H 0.147 0.853 48 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -5.316 12.632 4.054 14.292 hybrid contribution -0.970 -0.760 -0.702 1.418 sum -6.286 11.872 3.352 13.846 Atomic orbital electron populations 1.23069 0.81395 1.03326 1.00362 1.88285 1.19666 1.23458 1.94492 1.20332 0.92500 0.85090 0.92152 1.22505 1.01975 1.01745 0.97634 1.19601 0.87913 0.81697 0.79403 1.90681 1.60586 1.43352 1.47911 1.45754 1.08487 1.30187 1.48696 1.21974 0.80317 0.98767 1.00972 1.20645 0.92229 0.86227 0.95984 0.91442 1.22159 0.97425 1.00527 1.01612 1.43898 1.47998 1.24283 1.15226 1.20716 0.92747 0.98885 0.85712 1.19181 1.07618 1.22950 0.89586 0.91678 1.24984 0.97206 1.00867 0.95777 1.70097 1.34628 1.40112 1.08601 0.86306 0.79873 0.81304 0.79704 1.20497 1.21837 1.21841 1.20075 1.02623 0.93201 0.97742 1.21136 0.95968 1.00512 0.91832 1.21144 1.02036 0.95070 0.97515 1.20989 0.97035 0.94530 0.98225 1.21083 1.03103 1.01215 0.93088 1.17335 0.94067 0.89850 0.86612 1.91471 1.78444 1.79963 1.60524 0.93176 0.93765 0.88903 0.90462 0.91017 0.89893 0.74056 0.92934 0.92450 0.92457 0.93636 0.92986 0.95908 0.93302 0.98662 0.93910 0.83915 0.85346 0.85276 0.84909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.20 9.14 101.05 0.92 1.12 16 2 O -0.34 -6.14 8.93 -35.23 -0.31 -6.46 16 3 C 0.14 2.45 0.79 -92.92 -0.07 2.38 16 4 C -0.18 -2.60 7.78 37.16 0.29 -2.31 16 5 C 0.53 10.75 6.61 -10.98 -0.07 10.68 16 6 O -0.55 -12.15 14.14 5.56 0.08 -12.08 16 7 N -0.68 -13.99 5.30 -60.29 -0.32 -14.31 16 8 C 0.11 2.08 4.97 -4.04 -0.02 2.06 16 9 C 0.16 3.12 2.87 -67.93 -0.20 2.92 16 10 H 0.07 1.32 7.87 -51.93 -0.41 0.91 16 11 C -0.16 -2.68 9.17 37.16 0.34 -2.34 16 12 N -0.59 -13.94 2.28 -173.48 -0.40 -14.34 16 13 C 0.16 3.99 8.15 59.85 0.49 4.47 16 14 C -0.26 -6.78 9.30 -15.06 -0.14 -6.92 16 15 H 0.07 1.66 7.83 -52.49 -0.41 1.25 16 16 C 0.01 0.30 5.06 -17.43 -0.09 0.21 16 17 N -0.89 -24.51 10.80 55.49 0.60 -23.91 16 18 Si 0.90 20.94 29.57 -169.99 -5.03 15.91 16 19 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 22 C -0.13 -2.17 4.29 -104.55 -0.45 -2.61 16 23 C -0.08 -1.09 7.65 -39.60 -0.30 -1.40 16 24 C -0.14 -1.64 10.04 -39.58 -0.40 -2.03 16 25 C -0.09 -0.99 10.04 -39.59 -0.40 -1.38 16 26 C -0.17 -2.11 10.03 -39.51 -0.40 -2.51 16 27 C 0.14 2.21 6.18 -39.42 -0.24 1.96 16 28 F -0.13 -2.12 13.17 2.25 0.03 -2.09 16 29 H 0.05 0.60 5.18 -51.93 -0.27 0.33 16 30 H 0.04 0.54 6.74 -51.93 -0.35 0.19 16 31 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 33 H 0.07 0.87 6.63 -51.93 -0.34 0.53 16 34 H 0.08 1.20 5.92 -51.93 -0.31 0.89 16 35 H 0.42 9.25 7.32 -40.82 -0.30 8.96 16 36 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 37 H 0.06 1.21 7.84 -51.93 -0.41 0.81 16 38 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.05 0.90 6.67 -51.93 -0.35 0.55 16 41 H 0.02 0.61 7.68 -51.93 -0.40 0.21 16 42 H 0.05 1.28 6.98 -51.93 -0.36 0.92 16 43 H -0.01 -0.11 6.43 -51.93 -0.33 -0.44 16 44 H 0.25 6.78 8.31 -40.82 -0.34 6.44 16 45 H 0.14 2.03 5.71 -52.48 -0.30 1.73 16 46 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 47 H 0.13 1.01 8.06 -52.49 -0.42 0.58 16 48 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 LS Contribution 379.60 15.07 5.72 5.72 Total: -1.00 -30.47 379.60 -7.42 -37.88 By element: Atomic # 1 Polarization: 16.42 SS G_CDS: -7.05 Total: 9.36 kcal Atomic # 6 Polarization: 5.04 SS G_CDS: -0.73 Total: 4.30 kcal Atomic # 7 Polarization: -52.44 SS G_CDS: -0.12 Total: -52.56 kcal Atomic # 8 Polarization: -18.29 SS G_CDS: -0.24 Total: -18.53 kcal Atomic # 9 Polarization: -2.12 SS G_CDS: 0.03 Total: -2.09 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.03 Total: 15.91 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -30.47 -7.42 -37.88 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734039051.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.943 kcal (2) G-P(sol) polarization free energy of solvation -30.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds