Wall clock time and date at job start Tue Mar 31 2020 21:10:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42897 * 113.99919 * 2 1 4 4 C 1.52999 * 109.47320 * 305.70897 * 3 2 1 5 5 C 1.50706 * 109.47170 * 185.70779 * 3 2 1 6 6 O 1.21277 * 120.00043 * 214.99553 * 5 3 2 7 7 N 1.34782 * 119.99720 * 34.72728 * 5 3 2 8 8 C 1.46497 * 119.99845 * 180.27584 * 7 5 3 9 9 C 1.52999 * 109.46771 * 179.97438 * 8 7 5 10 10 H 1.09000 * 109.47822 * 65.00015 * 9 8 7 11 11 C 1.53003 * 109.46935 * 184.99744 * 9 8 7 12 12 N 1.46500 * 109.47177 * 304.99567 * 9 8 7 13 13 C 1.46498 * 120.00056 * 300.00246 * 12 9 8 14 14 C 1.36932 * 120.00197 * 120.00408 * 12 9 8 15 15 H 1.07998 * 120.00127 * 24.10344 * 14 12 9 16 16 C 1.38816 * 120.00419 * 204.10930 * 14 12 9 17 17 N 1.31621 * 119.99708 * 12.64071 * 16 14 12 18 18 Si 1.86799 * 120.00243 * 192.64476 * 16 14 12 19 19 H 1.48498 * 109.47137 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47079 * 119.99662 * 18 16 14 21 21 H 1.48503 * 109.46793 * 240.00070 * 18 16 14 22 22 C 1.50701 * 109.47244 * 65.71140 * 3 2 1 23 23 C 1.38220 * 120.01472 * 5.45628 * 22 3 2 24 24 C 1.38217 * 120.02789 * 179.97438 * 23 22 3 25 25 C 1.38271 * 120.04927 * 0.02562 * 24 23 22 26 26 C 1.38174 * 120.02667 * 0.02562 * 25 24 23 27 27 C 1.38441 * 120.00957 * 185.17878 * 22 3 2 28 28 F 1.35099 * 120.02759 * 0.02562 * 27 22 3 29 29 H 1.08992 * 109.47740 * 306.76870 * 1 2 3 30 30 H 1.09003 * 109.46619 * 66.76919 * 1 2 3 31 31 H 1.08995 * 109.47085 * 186.75952 * 1 2 3 32 32 H 1.09000 * 109.47084 * 300.00241 * 4 3 2 33 33 H 1.09002 * 109.46734 * 59.99972 * 4 3 2 34 34 H 1.08993 * 109.47319 * 180.02562 * 4 3 2 35 35 H 0.97006 * 119.99817 * 0.27259 * 7 5 3 36 36 H 1.09005 * 109.47103 * 299.99331 * 8 7 5 37 37 H 1.08995 * 109.47261 * 59.99654 * 8 7 5 38 38 H 1.08997 * 109.47182 * 179.97438 * 11 9 8 39 39 H 1.08996 * 109.47331 * 299.99932 * 11 9 8 40 40 H 1.08997 * 109.47072 * 60.00178 * 11 9 8 41 41 H 1.09001 * 109.47186 * 88.84599 * 13 12 9 42 42 H 1.09003 * 109.47388 * 208.84097 * 13 12 9 43 43 H 1.09000 * 109.47318 * 328.84428 * 13 12 9 44 44 H 0.96996 * 120.00314 * 180.02562 * 17 16 14 45 45 H 1.08004 * 119.98168 * 0.02562 * 23 22 3 46 46 H 1.07990 * 119.97615 * 180.02562 * 24 23 22 47 47 H 1.08002 * 119.98445 * 179.97438 * 25 24 23 48 48 H 1.08002 * 120.01048 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.4485 2.1138 -1.1713 5 6 3.5061 1.1893 -0.1413 6 8 4.2320 1.9754 0.4297 7 7 4.0374 0.2086 -0.8980 8 6 5.4917 0.0921 -1.0305 9 6 5.8277 -1.0946 -1.9358 10 1 5.4612 -0.8983 -2.9434 11 6 7.3444 -1.2931 -1.9746 12 7 5.1901 -2.3049 -1.4115 13 6 5.5191 -2.7819 -0.0660 14 6 4.2867 -2.9903 -2.1789 15 1 4.3174 -2.9047 -3.2551 16 6 3.3311 -3.7951 -1.5738 17 7 3.1270 -3.7121 -0.2762 18 14 2.3350 -4.9959 -2.6011 19 1 2.7525 -4.8960 -4.0227 20 1 2.5690 -6.3784 -2.1120 21 1 0.8914 -4.6674 -2.4854 22 6 1.6806 2.0021 1.2950 23 6 1.0181 1.3198 2.2980 24 6 0.7161 1.9583 3.4861 25 6 1.0759 3.2803 3.6726 26 6 1.7374 3.9647 2.6710 27 6 2.0465 3.3240 1.4828 28 9 2.6986 3.9904 0.5051 29 1 -0.3634 0.6151 0.8231 30 1 -0.3633 0.4054 -0.9444 31 1 -0.3633 -1.0205 0.1210 32 1 1.6869 1.6099 -2.1080 33 1 0.3665 2.1978 -1.0690 34 1 1.8921 3.1094 -1.1715 35 1 3.4568 -0.4201 -1.3547 36 1 5.8913 1.0073 -1.4673 37 1 5.9347 -0.0647 -0.0471 38 1 7.5838 -2.1388 -2.6192 39 1 7.8188 -0.3927 -2.3647 40 1 7.7109 -1.4895 -0.9671 41 1 4.8519 -2.3148 0.6584 42 1 5.3992 -3.8645 -0.0248 43 1 6.5510 -2.5214 0.1697 44 1 2.4596 -4.2747 0.1468 45 1 0.7369 0.2870 2.1536 46 1 0.1988 1.4243 4.2693 47 1 0.8391 3.7783 4.6012 48 1 2.0179 4.9974 2.8167 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734039051.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:10:13 Heat of formation + Delta-G solvation = -79.065940 kcal Electronic energy + Delta-G solvation = -31771.877704 eV Core-core repulsion = 27549.338062 eV Total energy + Delta-G solvation = -4222.539642 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -49.87388 -41.66890 -39.89396 -38.64321 -38.27798 -35.33814 -33.75362 -33.48333 -31.71545 -31.11499 -30.41649 -28.48071 -27.95444 -27.05781 -25.06019 -24.73350 -23.71143 -22.90504 -21.13614 -20.74866 -18.90786 -18.73857 -18.69932 -17.79845 -17.13867 -17.05589 -16.72236 -16.56068 -16.45739 -16.11441 -15.79585 -15.58442 -15.50066 -15.06838 -14.63699 -14.51415 -14.31612 -14.04739 -13.90697 -13.69169 -13.60518 -13.49465 -13.24768 -13.15787 -12.95295 -12.83273 -12.59777 -12.52795 -12.49404 -12.43952 -12.26033 -12.03611 -11.79379 -11.72021 -11.46438 -10.91483 -10.77912 -10.53443 -9.94034 -9.88571 -9.60650 -8.68314 -7.71765 -5.19850 0.13024 0.23601 1.48654 1.49728 1.53464 1.61183 2.28441 2.56760 2.66714 2.68748 3.31154 3.39715 3.43097 3.66896 3.72321 3.82918 3.89927 4.07461 4.12251 4.34990 4.36532 4.39849 4.43695 4.49715 4.51361 4.59608 4.61748 4.70922 4.79977 4.81309 4.86212 4.86954 4.97833 5.09662 5.11257 5.16339 5.27647 5.31072 5.33845 5.43352 5.47993 5.62200 5.72600 5.77528 5.93306 6.03944 6.42562 6.66717 7.23482 7.24977 7.94715 8.42224 9.31074 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.012914 B = 0.004349 C = 0.003709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2167.716984 B = 6436.768566 C = 7546.435173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.374 6.374 3 C 0.146 3.854 4 C -0.174 4.174 5 C 0.522 3.478 6 O -0.571 6.571 7 N -0.686 5.686 8 C 0.112 3.888 9 C 0.157 3.843 10 H 0.072 0.928 11 C -0.148 4.148 12 N -0.599 5.599 13 C 0.185 3.815 14 C -0.265 4.265 15 H 0.069 0.931 16 C -0.034 4.034 17 N -0.918 5.918 18 Si 0.956 3.044 19 H -0.271 1.271 20 H -0.299 1.299 21 H -0.293 1.293 22 C -0.156 4.156 23 C -0.093 4.093 24 C -0.133 4.133 25 C -0.079 4.079 26 C -0.166 4.166 27 C 0.111 3.889 28 F -0.141 7.141 29 H 0.068 0.932 30 H 0.059 0.941 31 H 0.091 0.909 32 H 0.074 0.926 33 H 0.094 0.906 34 H 0.079 0.921 35 H 0.413 0.587 36 H 0.070 0.930 37 H 0.038 0.962 38 H 0.055 0.945 39 H 0.076 0.924 40 H 0.047 0.953 41 H -0.010 1.010 42 H 0.022 0.978 43 H 0.018 0.982 44 H 0.244 0.756 45 H 0.136 0.864 46 H 0.159 0.841 47 H 0.171 0.829 48 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.553 13.505 3.905 15.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.292 6.292 3 C 0.102 3.898 4 C -0.231 4.231 5 C 0.307 3.693 6 O -0.452 6.452 7 N -0.335 5.335 8 C -0.014 4.014 9 C 0.049 3.951 10 H 0.090 0.910 11 C -0.207 4.207 12 N -0.322 5.322 13 C 0.039 3.961 14 C -0.395 4.395 15 H 0.087 0.913 16 C -0.231 4.231 17 N -0.563 5.563 18 Si 0.786 3.214 19 H -0.195 1.195 20 H -0.227 1.227 21 H -0.220 1.220 22 C -0.158 4.158 23 C -0.111 4.111 24 C -0.150 4.150 25 C -0.096 4.096 26 C -0.185 4.185 27 C 0.092 3.908 28 F -0.120 7.120 29 H 0.086 0.914 30 H 0.077 0.923 31 H 0.109 0.891 32 H 0.093 0.907 33 H 0.112 0.888 34 H 0.097 0.903 35 H 0.250 0.750 36 H 0.088 0.912 37 H 0.057 0.943 38 H 0.074 0.926 39 H 0.095 0.905 40 H 0.066 0.934 41 H 0.009 0.991 42 H 0.041 0.959 43 H 0.037 0.963 44 H 0.054 0.946 45 H 0.154 0.846 46 H 0.177 0.823 47 H 0.188 0.812 48 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -5.986 13.781 4.321 15.634 hybrid contribution -0.737 -1.070 -0.738 1.494 sum -6.723 12.711 3.583 14.819 Atomic orbital electron populations 1.23221 0.79449 1.03768 1.01924 1.88221 1.21928 1.24263 1.94834 1.20231 0.90260 0.85243 0.94026 1.22464 1.03240 1.00920 0.96503 1.20249 0.89603 0.80925 0.78520 1.90643 1.61763 1.44139 1.48675 1.45850 1.08658 1.30155 1.48855 1.21925 0.80153 0.99424 0.99943 1.20834 0.93802 0.84632 0.95784 0.90997 1.22042 0.95023 1.02041 1.01582 1.44015 1.47973 1.25578 1.14671 1.20357 0.93211 0.96797 0.85690 1.19432 1.07457 1.22706 0.89932 0.91344 1.25586 0.98420 1.02457 0.96590 1.70255 1.35259 1.40835 1.09941 0.85387 0.78388 0.78845 0.78803 1.19511 1.22681 1.22016 1.20099 1.04199 0.93692 0.97802 1.21230 0.96749 1.00401 0.92727 1.21543 1.00965 0.95571 0.96967 1.21469 0.95040 0.94102 0.99010 1.21452 1.02497 1.02329 0.92194 1.17700 0.95349 0.90158 0.87615 1.91422 1.79022 1.80171 1.61339 0.91407 0.92274 0.89091 0.90662 0.88765 0.90266 0.74963 0.91236 0.94332 0.92551 0.90522 0.93405 0.99145 0.95875 0.96317 0.94634 0.84610 0.82321 0.81193 0.82766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.32 9.14 113.37 1.04 1.36 16 2 O -0.37 -13.79 8.93 -148.98 -1.33 -15.12 16 3 C 0.15 5.08 0.79 -12.28 -0.01 5.07 16 4 C -0.17 -5.01 7.78 71.98 0.56 -4.45 16 5 C 0.52 21.75 6.61 87.66 0.58 22.33 16 6 O -0.57 -26.09 14.14 -3.02 -0.04 -26.13 16 7 N -0.69 -28.88 5.30 -463.06 -2.45 -31.34 16 8 C 0.11 4.39 4.97 86.38 0.43 4.82 16 9 C 0.16 6.09 2.87 44.99 0.13 6.22 16 10 H 0.07 2.73 7.87 -2.39 -0.02 2.71 16 11 C -0.15 -4.75 9.17 71.98 0.66 -4.09 16 12 N -0.60 -28.41 2.28 -702.78 -1.60 -30.01 16 13 C 0.18 9.17 8.15 127.77 1.04 10.21 16 14 C -0.27 -13.65 9.30 84.04 0.78 -12.86 16 15 H 0.07 3.44 7.83 -2.91 -0.02 3.42 16 16 C -0.03 -1.78 5.06 84.86 0.43 -1.35 16 17 N -0.92 -51.84 10.80 21.65 0.23 -51.60 16 18 Si 0.96 43.40 29.57 68.60 2.03 45.43 16 19 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 20 H -0.30 -13.90 7.11 99.48 0.71 -13.19 16 21 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 22 C -0.16 -5.02 4.29 -19.82 -0.08 -5.11 16 23 C -0.09 -2.59 7.65 22.26 0.17 -2.42 16 24 C -0.13 -2.76 10.04 22.27 0.22 -2.54 16 25 C -0.08 -1.46 10.04 22.26 0.22 -1.23 16 26 C -0.17 -3.88 10.03 22.31 0.22 -3.66 16 27 C 0.11 3.44 6.18 22.38 0.14 3.58 16 28 F -0.14 -4.82 13.17 44.97 0.59 -4.23 16 29 H 0.07 1.58 5.18 -2.39 -0.01 1.57 16 30 H 0.06 1.39 6.74 -2.39 -0.02 1.38 16 31 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 32 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 33 H 0.09 2.22 6.63 -2.39 -0.02 2.20 16 34 H 0.08 2.33 5.92 -2.39 -0.01 2.32 16 35 H 0.41 18.71 7.32 -92.70 -0.68 18.03 16 36 H 0.07 2.49 8.14 -2.38 -0.02 2.47 16 37 H 0.04 1.66 7.84 -2.39 -0.02 1.64 16 38 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 40 H 0.05 1.57 6.67 -2.39 -0.02 1.56 16 41 H -0.01 -0.55 7.68 -2.39 -0.02 -0.56 16 42 H 0.02 1.23 6.98 -2.39 -0.02 1.21 16 43 H 0.02 0.82 6.43 -2.39 -0.02 0.80 16 44 H 0.24 13.60 8.31 -92.71 -0.77 12.83 16 45 H 0.14 3.89 5.71 -2.91 -0.02 3.87 16 46 H 0.16 2.29 8.06 -2.92 -0.02 2.26 16 47 H 0.17 1.77 8.06 -2.91 -0.02 1.74 16 48 H 0.15 2.83 8.06 -2.91 -0.02 2.80 16 Total: -1.00 -67.61 379.60 4.26 -63.35 By element: Atomic # 1 Polarization: 33.48 SS G_CDS: 0.30 Total: 33.78 kcal Atomic # 6 Polarization: 9.33 SS G_CDS: 6.53 Total: 15.87 kcal Atomic # 7 Polarization: -109.13 SS G_CDS: -3.82 Total: -112.95 kcal Atomic # 8 Polarization: -39.88 SS G_CDS: -1.37 Total: -41.25 kcal Atomic # 9 Polarization: -4.82 SS G_CDS: 0.59 Total: -4.23 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Total: -67.61 4.26 -63.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734039051.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.718 kcal (2) G-P(sol) polarization free energy of solvation -67.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds