Wall clock time and date at job start Tue Mar 31 2020 21:10:18
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42901 * 1
3 3 C 1.35952 * 117.00208 * 2 1
4 4 C 1.38665 * 120.06217 * 0.02562 * 3 2 1
5 5 C 1.38171 * 119.96863 * 179.70754 * 4 3 2
6 6 C 1.38265 * 120.09652 * 0.54789 * 5 4 3
7 7 C 1.50702 * 119.93727 * 179.72916 * 6 5 4
8 8 C 1.53001 * 109.46931 * 269.72373 * 7 6 5
9 9 C 1.50694 * 109.47185 * 179.97438 * 8 7 6
10 10 O 1.21285 * 120.00210 * 0.02562 * 9 8 7
11 11 N 1.34776 * 120.00278 * 180.02562 * 9 8 7
12 12 C 1.46498 * 120.00220 * 179.72632 * 11 9 8
13 13 C 1.53002 * 109.47091 * 180.27315 * 12 11 9
14 14 H 1.08998 * 109.47012 * 65.00259 * 13 12 11
15 15 C 1.53002 * 109.47137 * 185.00235 * 13 12 11
16 16 N 1.46498 * 109.47479 * 304.99968 * 13 12 11
17 17 C 1.46501 * 119.99810 * 300.00350 * 16 13 12
18 18 C 1.36937 * 119.99977 * 119.99418 * 16 13 12
19 19 H 1.07995 * 119.99674 * 20.37618 * 18 16 13
20 20 C 1.38810 * 119.99882 * 200.36378 * 18 16 13
21 21 N 1.31618 * 120.00395 * 15.00497 * 20 18 16
22 22 Si 1.86800 * 119.99901 * 195.00255 * 20 18 16
23 23 H 1.48495 * 109.47397 * 85.00376 * 22 20 18
24 24 H 1.48505 * 109.47271 * 205.00504 * 22 20 18
25 25 H 1.48505 * 109.47077 * 324.99949 * 22 20 18
26 26 C 1.38251 * 120.12401 * 359.45232 * 6 5 4
27 27 C 1.38339 * 120.03216 * 0.27424 * 26 6 5
28 28 F 1.35092 * 120.04922 * 179.97438 * 27 26 6
29 29 H 1.08998 * 109.46864 * 180.02562 * 1 2 3
30 30 H 1.08998 * 109.47052 * 299.99930 * 1 2 3
31 31 H 1.08999 * 109.47347 * 59.99876 * 1 2 3
32 32 H 1.08004 * 120.01117 * 359.97438 * 4 3 2
33 33 H 1.08002 * 119.95426 * 180.29667 * 5 4 3
34 34 H 1.08998 * 109.47296 * 149.72374 * 7 6 5
35 35 H 1.09004 * 109.47236 * 29.72610 * 7 6 5
36 36 H 1.09005 * 109.47065 * 60.00305 * 8 7 6
37 37 H 1.08996 * 109.47578 * 300.00289 * 8 7 6
38 38 H 0.96999 * 119.99820 * 359.97438 * 11 9 8
39 39 H 1.08992 * 109.47294 * 300.27380 * 12 11 9
40 40 H 1.08998 * 109.47115 * 60.27483 * 12 11 9
41 41 H 1.09000 * 109.47279 * 180.02562 * 15 13 12
42 42 H 1.09005 * 109.46911 * 300.00518 * 15 13 12
43 43 H 1.09004 * 109.47426 * 59.99825 * 15 13 12
44 44 H 1.09005 * 109.47296 * 95.11595 * 17 16 13
45 45 H 1.09006 * 109.47155 * 215.11134 * 17 16 13
46 46 H 1.09002 * 109.47599 * 335.11037 * 17 16 13
47 47 H 0.97000 * 120.00188 * 179.97438 * 21 20 18
48 48 H 1.08001 * 119.98311 * 180.25429 * 26 6 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0463 1.2113 0.0000
4 6 1.2923 2.3751 0.0005
5 6 1.9217 3.6052 0.0066
6 6 3.3024 3.6776 0.0008
7 6 3.9851 5.0211 0.0013
8 6 4.2159 5.4764 -1.4410
9 6 4.8980 6.8202 -1.4406
10 8 5.1728 7.3604 -0.3901
11 7 5.2026 7.4217 -2.6075
12 6 5.8602 8.7308 -2.6071
13 6 6.0856 9.1888 -4.0495
14 1 5.1226 9.3501 -4.5341
15 6 6.8825 10.4949 -4.0512
16 7 6.8325 8.1602 -4.7775
17 6 8.1661 7.7618 -4.3202
18 6 6.2842 7.5710 -5.8853
19 1 5.4822 8.0616 -6.4168
20 6 6.7592 6.3432 -6.3253
21 7 7.5138 5.6082 -5.5361
22 14 6.3277 5.7339 -8.0376
23 1 7.2881 6.2972 -9.0202
24 1 6.4006 4.2509 -8.0684
25 1 4.9511 6.1690 -8.3855
26 6 4.0579 2.5198 0.0002
27 6 3.4333 1.2855 -0.0002
28 9 4.1713 0.1539 -0.0013
29 1 -0.3633 -1.0277 0.0005
30 1 -0.3633 0.5138 0.8900
31 1 -0.3634 0.5138 -0.8899
32 1 0.2137 2.3200 0.0005
33 1 1.3342 4.5114 0.0119
34 1 4.9431 4.9417 0.5150
35 1 3.3562 5.7480 0.5156
36 1 3.2578 5.5559 -1.9547
37 1 4.8447 4.7496 -1.9553
38 1 4.9831 6.9895 -3.4477
39 1 5.2294 9.4541 -2.0906
40 1 6.8199 8.6551 -2.0958
41 1 7.0426 10.8215 -5.0787
42 1 6.3267 11.2603 -3.5094
43 1 7.8454 10.3338 -3.5665
44 1 8.0839 6.8802 -3.6843
45 1 8.7919 7.5307 -5.1823
46 1 8.6149 8.5778 -3.7538
47 1 7.8454 4.7500 -5.8435
48 1 5.1363 2.5790 -0.0002
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001734042238.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:10:18
Heat of formation + Delta-G solvation = -82.206772 kcal
Electronic energy + Delta-G solvation = -29081.966599 eV
Core-core repulsion = 24859.290760 eV
Total energy + Delta-G solvation = -4222.675838 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 338.179 amu
Computer time = 0.81 seconds
Orbital eigenvalues (eV)
-48.85071 -40.28695 -39.24086 -37.97321 -36.71473 -33.68950 -33.40827 -32.01988
-30.91800 -29.69729 -29.20596 -27.67011 -26.06856 -25.88133 -23.92822 -22.96802
-22.95375 -21.23119 -19.69748 -19.18347 -18.52576 -17.15053 -17.03555 -16.93182
-16.38271 -16.28733 -15.50541 -15.35305 -15.20196 -15.01869 -14.94733 -14.45642
-14.34097 -14.03075 -13.52480 -13.34562 -12.95499 -12.80723 -12.62509 -12.58335
-12.39353 -12.14697 -12.06403 -11.97629 -11.62592 -11.57383 -11.31396 -11.13324
-11.06199 -10.87418 -10.81470 -10.72048 -10.43053 -10.31306 -9.87886 -9.81029
-9.36491 -9.09630 -8.61805 -8.34425 -8.27100 -6.86805 -5.78868 -3.24173
0.95324 1.03840 2.87935 3.17870 3.33370 3.33576 3.40644 3.42083
3.85994 4.06352 4.42698 4.46038 4.58329 4.74161 4.81005 4.93820
5.05723 5.12649 5.19165 5.24323 5.33678 5.33833 5.37827 5.47160
5.60080 5.72334 5.79297 5.84582 5.92208 5.95672 6.01958 6.08001
6.14683 6.21184 6.35342 6.38291 6.43143 6.46604 6.68170 6.78599
6.88827 7.03334 7.16107 7.37109 7.69256 7.76271 8.23431 8.31023
8.83360 9.16355 9.80227 10.29003 11.24285
Molecular weight = 338.18amu
Principal moments of inertia in cm(-1)
A = 0.011135 B = 0.002689 C = 0.002352
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2513.938056 B =10411.692828 C =11901.090135
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.027 3.973
2 O -0.312 6.312
3 C 0.086 3.914
4 C -0.180 4.180
5 C -0.086 4.086
6 C -0.083 4.083
7 C -0.059 4.059
8 C -0.136 4.136
9 C 0.510 3.490
10 O -0.567 6.567
11 N -0.701 5.701
12 C 0.108 3.892
13 C 0.158 3.842
14 H 0.068 0.932
15 C -0.158 4.158
16 N -0.594 5.594
17 C 0.163 3.837
18 C -0.261 4.261
19 H 0.068 0.932
20 C 0.005 3.995
21 N -0.900 5.900
22 Si 0.901 3.099
23 H -0.289 1.289
24 H -0.292 1.292
25 H -0.281 1.281
26 C -0.110 4.110
27 C 0.072 3.928
28 F -0.133 7.133
29 H 0.101 0.899
30 H 0.056 0.944
31 H 0.057 0.943
32 H 0.137 0.863
33 H 0.133 0.867
34 H 0.082 0.918
35 H 0.081 0.919
36 H 0.090 0.910
37 H 0.097 0.903
38 H 0.415 0.585
39 H 0.052 0.948
40 H 0.056 0.944
41 H 0.056 0.944
42 H 0.045 0.955
43 H 0.051 0.949
44 H 0.029 0.971
45 H 0.040 0.960
46 H -0.001 1.001
47 H 0.253 0.747
48 H 0.145 0.855
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.135 -4.807 11.082 17.845
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.068 4.068
2 O -0.226 6.226
3 C 0.040 3.960
4 C -0.199 4.199
5 C -0.104 4.104
6 C -0.084 4.084
7 C -0.097 4.097
8 C -0.176 4.176
9 C 0.296 3.704
10 O -0.447 6.447
11 N -0.351 5.351
12 C -0.019 4.019
13 C 0.049 3.951
14 H 0.086 0.914
15 C -0.218 4.218
16 N -0.317 5.317
17 C 0.019 3.981
18 C -0.391 4.391
19 H 0.086 0.914
20 C -0.194 4.194
21 N -0.545 5.545
22 Si 0.731 3.269
23 H -0.216 1.216
24 H -0.218 1.218
25 H -0.206 1.206
26 C -0.129 4.129
27 C 0.052 3.948
28 F -0.112 7.112
29 H 0.119 0.881
30 H 0.075 0.925
31 H 0.076 0.924
32 H 0.154 0.846
33 H 0.151 0.849
34 H 0.101 0.899
35 H 0.100 0.900
36 H 0.108 0.892
37 H 0.116 0.884
38 H 0.252 0.748
39 H 0.070 0.930
40 H 0.075 0.925
41 H 0.075 0.925
42 H 0.064 0.936
43 H 0.070 0.930
44 H 0.048 0.952
45 H 0.059 0.941
46 H 0.017 0.983
47 H 0.063 0.937
48 H 0.163 0.837
Dipole moment (debyes) X Y Z Total
from point charges -12.736 -4.837 11.751 17.991
hybrid contribution -0.307 -0.810 -1.477 1.712
sum -13.043 -5.647 10.274 17.538
Atomic orbital electron populations
1.23098 0.78058 1.04160 1.01485 1.86130 1.21616 1.25934 1.88893
1.18995 0.90819 0.85603 1.00572 1.21105 1.00159 0.91452 1.07140
1.20947 0.93976 0.97290 0.98203 1.19743 0.93306 0.95009 1.00298
1.20289 1.01454 0.91777 0.96182 1.21623 1.02220 0.95583 0.98153
1.20500 0.79133 0.86902 0.83902 1.90634 1.55770 1.66705 1.31606
1.45877 1.59290 1.20952 1.08975 1.21914 0.96581 0.83891 0.99504
1.20637 0.95320 0.89329 0.89792 0.91424 1.22179 1.00560 0.97537
1.01524 1.43958 1.14564 1.43094 1.30094 1.20751 0.85068 0.94661
0.97639 1.19205 1.17905 0.99791 1.02172 0.91407 1.24932 1.00321
0.95814 0.98289 1.70089 1.38391 1.11807 1.34196 0.86342 0.78071
0.77653 0.84822 1.21574 1.21819 1.20644 1.21009 1.01375 0.89661
1.00852 1.16964 0.85905 0.83020 1.08898 1.91499 1.76424 1.49008
1.94259 0.88067 0.92512 0.92392 0.84574 0.84883 0.89939 0.90002
0.89152 0.88431 0.74842 0.93015 0.92519 0.92455 0.93592 0.92965
0.95223 0.94075 0.98268 0.93704 0.83736
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.18 9.81 101.05 0.99 1.17 16
2 O -0.31 -3.55 10.36 -19.59 -0.20 -3.75 16
3 C 0.09 1.02 6.69 -39.18 -0.26 0.76 16
4 C -0.18 -1.73 9.04 -39.45 -0.36 -2.09 16
5 C -0.09 -0.85 9.69 -39.60 -0.38 -1.23 16
6 C -0.08 -0.94 5.13 -104.61 -0.54 -1.48 16
7 C -0.06 -0.72 4.63 -27.88 -0.13 -0.85 16
8 C -0.14 -1.86 5.68 -27.88 -0.16 -2.02 16
9 C 0.51 8.90 7.83 -10.99 -0.09 8.81 16
10 O -0.57 -11.35 15.98 5.55 0.09 -11.26 16
11 N -0.70 -12.84 5.39 -60.30 -0.32 -13.16 16
12 C 0.11 1.96 4.97 -4.04 -0.02 1.94 16
13 C 0.16 2.95 2.87 -67.93 -0.19 2.76 16
14 H 0.07 1.25 7.85 -51.93 -0.41 0.84 16
15 C -0.16 -2.58 9.18 37.16 0.34 -2.24 16
16 N -0.59 -13.47 2.29 -173.48 -0.40 -13.87 16
17 C 0.16 3.84 8.11 59.85 0.49 4.32 16
18 C -0.26 -6.51 9.34 -15.06 -0.14 -6.65 16
19 H 0.07 1.66 7.81 -52.49 -0.41 1.26 16
20 C 0.01 0.14 5.06 -17.43 -0.09 0.05 16
21 N -0.90 -24.42 10.67 55.49 0.59 -23.82 16
22 Si 0.90 20.73 29.58 -169.99 -5.03 15.70 16
23 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16
24 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16
25 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16
26 C -0.11 -1.34 9.67 -39.54 -0.38 -1.72 16
27 C 0.07 0.95 7.31 -39.30 -0.29 0.66 16
28 F -0.13 -1.93 17.11 2.25 0.04 -1.89 16
29 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16
30 H 0.06 0.29 7.66 -51.93 -0.40 -0.10 16
31 H 0.06 0.32 7.66 -51.93 -0.40 -0.08 16
32 H 0.14 0.93 6.30 -52.48 -0.33 0.60 16
33 H 0.13 1.04 8.06 -52.49 -0.42 0.61 16
34 H 0.08 1.07 8.04 -51.93 -0.42 0.66 16
35 H 0.08 0.97 8.04 -51.93 -0.42 0.55 16
36 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16
37 H 0.10 1.40 8.14 -51.93 -0.42 0.98 16
38 H 0.41 8.03 7.89 -40.82 -0.32 7.70 16
39 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16
40 H 0.06 1.12 7.84 -51.93 -0.41 0.71 16
41 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16
42 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16
43 H 0.05 0.86 6.66 -51.93 -0.35 0.52 16
44 H 0.03 0.76 7.40 -51.93 -0.38 0.38 16
45 H 0.04 1.05 7.21 -51.93 -0.37 0.68 16
46 H 0.00 -0.02 6.44 -51.93 -0.33 -0.36 16
47 H 0.25 6.80 8.31 -40.82 -0.34 6.46 16
48 H 0.14 1.63 8.06 -52.49 -0.42 1.21 16
LS Contribution 397.81 15.07 5.99 5.99
Total: -1.00 -30.19 397.81 -7.91 -38.11
By element:
Atomic # 1 Polarization: 13.24 SS G_CDS: -7.46 Total: 5.77 kcal
Atomic # 6 Polarization: 3.39 SS G_CDS: -1.21 Total: 2.18 kcal
Atomic # 7 Polarization: -50.73 SS G_CDS: -0.13 Total: -50.86 kcal
Atomic # 8 Polarization: -14.90 SS G_CDS: -0.11 Total: -15.01 kcal
Atomic # 9 Polarization: -1.93 SS G_CDS: 0.04 Total: -1.89 kcal
Atomic # 14 Polarization: 20.73 SS G_CDS: -5.03 Total: 15.70 kcal
Total LS contribution 5.99 Total: 5.99 kcal
Total: -30.19 -7.91 -38.11 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001734042238.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -44.101 kcal
(2) G-P(sol) polarization free energy of solvation -30.194 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.295 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.912 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.106 kcal
(6) G-S(sol) free energy of system = (1) + (5) -82.207 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.81 seconds