Wall clock time and date at job start Tue Mar 31 2020 21:09:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47581 * 2 1 4 4 C 1.53001 * 109.47535 * 119.99879 * 2 1 3 5 5 N 1.46493 * 109.47515 * 174.99722 * 4 2 1 6 6 C 1.36939 * 120.00258 * 179.97438 * 5 4 2 7 7 H 1.08003 * 119.99396 * 0.02562 * 6 5 4 8 8 C 1.38808 * 120.00269 * 180.02562 * 6 5 4 9 9 N 1.31622 * 119.99815 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00127 * 180.02562 * 8 6 5 11 11 H 1.48505 * 109.47321 * 90.00013 * 10 8 6 12 12 H 1.48496 * 109.47185 * 210.00397 * 10 8 6 13 13 H 1.48502 * 109.47055 * 330.00361 * 10 8 6 14 14 N 1.46504 * 109.47025 * 240.00008 * 2 1 3 15 15 C 1.46497 * 120.00154 * 299.99766 * 14 2 1 16 16 C 1.34775 * 120.00092 * 120.00238 * 14 2 1 17 17 O 1.21287 * 119.99831 * 359.97438 * 16 14 2 18 18 C 1.50697 * 120.00286 * 179.97438 * 16 14 2 19 19 C 1.52995 * 109.47523 * 179.97438 * 18 16 14 20 20 C 1.53004 * 109.47487 * 180.02562 * 19 18 16 21 21 O 1.42893 * 109.47267 * 180.02562 * 20 19 18 22 22 C 1.35956 * 117.00026 * 179.97438 * 21 20 19 23 23 C 1.38657 * 120.06128 * 359.97438 * 22 21 20 24 24 C 1.38184 * 119.96964 * 180.02562 * 23 22 21 25 25 C 1.38265 * 120.09281 * 359.97438 * 24 23 22 26 26 C 1.38248 * 120.12705 * 0.02562 * 25 24 23 27 27 C 1.38332 * 120.03366 * 359.97438 * 26 25 24 28 28 F 1.35103 * 120.05240 * 180.02562 * 27 26 25 29 29 H 1.09005 * 109.46668 * 300.00139 * 1 2 3 30 30 H 1.09000 * 109.46808 * 59.99800 * 1 2 3 31 31 H 1.08993 * 109.47134 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47084 * 295.00389 * 4 2 1 33 33 H 1.09006 * 109.46771 * 54.99486 * 4 2 1 34 34 H 0.97004 * 119.99975 * 0.02562 * 5 4 2 35 35 H 0.96999 * 119.99589 * 179.97438 * 9 8 6 36 36 H 1.08997 * 109.47493 * 270.00482 * 15 14 2 37 37 H 1.09004 * 109.46714 * 29.99944 * 15 14 2 38 38 H 1.08988 * 109.47358 * 149.99861 * 15 14 2 39 39 H 1.09004 * 109.46976 * 60.00006 * 18 16 14 40 40 H 1.09001 * 109.47011 * 300.00149 * 18 16 14 41 41 H 1.09007 * 109.47098 * 60.00288 * 19 18 16 42 42 H 1.09001 * 109.47491 * 300.00335 * 19 18 16 43 43 H 1.08994 * 109.46599 * 59.99869 * 20 19 18 44 44 H 1.09001 * 109.46881 * 300.00527 * 20 19 18 45 45 H 1.08004 * 120.01774 * 0.03769 * 23 22 21 46 46 H 1.08000 * 119.95526 * 180.27319 * 24 23 22 47 47 H 1.08001 * 119.93128 * 179.97438 * 25 24 23 48 48 H 1.07998 * 119.98480 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 3.5001 -0.8264 1.1905 6 6 4.1840 -1.4379 2.2072 7 1 3.6468 -1.8430 3.0521 8 6 5.5674 -1.5371 2.1518 9 7 6.2219 -1.0429 1.1223 10 14 6.5002 -2.3719 3.5383 11 1 6.6328 -3.8213 3.2434 12 1 7.8504 -1.7662 3.6615 13 1 5.7588 -2.1919 4.8124 14 7 2.0183 -0.6906 -1.1962 15 6 1.6644 -2.0932 -1.4280 16 6 2.7932 -0.0357 -2.0834 17 8 3.0858 1.1256 -1.8916 18 6 3.2960 -0.7462 -3.3135 19 6 4.1454 0.2156 -4.1467 20 6 4.6553 -0.5056 -5.3961 21 8 5.4491 0.3925 -6.1739 22 6 5.9828 -0.0945 -7.3256 23 6 5.7476 -1.4092 -7.6985 24 6 6.2914 -1.9024 -8.8692 25 6 7.0694 -1.0867 -9.6698 26 6 7.3064 0.2247 -9.3018 27 6 6.7646 0.7239 -8.1309 28 9 6.9955 2.0055 -7.7712 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.7517 -0.1583 2.1370 33 1 1.6054 -1.7198 1.2952 34 1 3.9825 -0.4622 0.4318 35 1 7.1887 -1.1119 1.0839 36 1 2.4157 -2.7377 -0.9717 37 1 0.6904 -2.3002 -0.9846 38 1 1.6238 -2.2852 -2.5001 39 1 2.4484 -1.0891 -3.9070 40 1 3.9017 -1.6024 -3.0165 41 1 4.9930 0.5589 -3.5535 42 1 3.5394 1.0716 -4.4437 43 1 3.8075 -0.8485 -5.9890 44 1 5.2612 -1.3618 -5.0994 45 1 5.1396 -2.0473 -7.0744 46 1 6.1045 -2.9251 -9.1617 47 1 7.4934 -1.4750 -10.5841 48 1 7.9141 0.8600 -9.9291 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753729555.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:09:20 Heat of formation + Delta-G solvation = -83.710053 kcal Electronic energy + Delta-G solvation = -28902.920015 eV Core-core repulsion = 24680.178989 eV Total energy + Delta-G solvation = -4222.741025 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -48.90671 -40.26448 -39.70810 -37.78170 -36.44825 -34.05714 -33.76613 -31.85259 -30.98940 -30.22275 -29.93676 -27.30709 -26.62844 -25.57523 -23.72687 -22.75466 -22.56013 -21.73675 -20.49619 -18.83600 -18.42038 -17.39384 -17.06886 -16.98509 -16.66689 -16.60430 -15.75050 -15.73555 -15.23468 -15.15411 -14.70574 -14.62187 -14.10940 -13.92526 -13.63797 -13.38348 -13.18081 -13.00574 -12.80791 -12.63441 -12.35208 -12.27897 -12.22557 -12.03594 -11.93898 -11.79363 -11.63120 -11.49075 -11.38447 -11.09502 -10.83603 -10.77309 -10.66943 -10.42857 -10.03975 -9.68829 -9.39754 -9.25335 -8.86094 -8.44672 -8.22510 -6.88762 -5.72395 -3.01748 0.82105 0.97483 2.77364 3.03502 3.28553 3.40094 3.43772 3.49087 3.51353 3.99719 4.40157 4.51139 4.59753 4.68928 4.78822 4.84148 4.91068 4.96878 5.05570 5.14075 5.23581 5.29055 5.36681 5.38482 5.41296 5.55847 5.59631 5.61607 5.66768 5.72398 5.75885 5.87418 5.97332 6.06446 6.07894 6.10739 6.13851 6.19628 6.26715 6.38664 6.41639 6.49595 6.75196 7.01329 7.10697 7.70900 7.76545 8.45256 8.58223 9.56678 10.15627 10.51087 11.49663 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.010920 B = 0.002413 C = 0.002140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2563.443752 B =11602.063593 C =13079.598142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.125 3.875 3 H 0.100 0.900 4 C 0.144 3.856 5 N -0.728 5.728 6 C -0.241 4.241 7 H 0.069 0.931 8 C -0.013 4.013 9 N -0.929 5.929 10 Si 0.906 3.094 11 H -0.291 1.291 12 H -0.292 1.292 13 H -0.283 1.283 14 N -0.598 5.598 15 C 0.080 3.920 16 C 0.519 3.481 17 O -0.539 6.539 18 C -0.133 4.133 19 C -0.104 4.104 20 C 0.060 3.940 21 O -0.303 6.303 22 C 0.104 3.896 23 C -0.185 4.185 24 C -0.090 4.090 25 C -0.135 4.135 26 C -0.117 4.117 27 C 0.065 3.935 28 F -0.132 7.132 29 H 0.067 0.933 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.027 0.973 33 H 0.020 0.980 34 H 0.386 0.614 35 H 0.254 0.746 36 H 0.065 0.935 37 H 0.068 0.932 38 H 0.063 0.937 39 H 0.090 0.910 40 H 0.099 0.901 41 H 0.088 0.912 42 H 0.080 0.920 43 H 0.063 0.937 44 H 0.068 0.932 45 H 0.139 0.861 46 H 0.132 0.868 47 H 0.133 0.867 48 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.022 -3.743 -21.834 23.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.021 3.979 3 H 0.118 0.882 4 C 0.016 3.984 5 N -0.372 5.372 6 C -0.372 4.372 7 H 0.087 0.913 8 C -0.209 4.209 9 N -0.577 5.577 10 Si 0.737 3.263 11 H -0.218 1.218 12 H -0.218 1.218 13 H -0.208 1.208 14 N -0.332 5.332 15 C -0.064 4.064 16 C 0.307 3.693 17 O -0.415 6.415 18 C -0.173 4.173 19 C -0.142 4.142 20 C -0.015 4.015 21 O -0.216 6.216 22 C 0.057 3.943 23 C -0.203 4.203 24 C -0.108 4.108 25 C -0.153 4.153 26 C -0.136 4.136 27 C 0.046 3.954 28 F -0.110 7.110 29 H 0.086 0.914 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.044 0.956 33 H 0.037 0.963 34 H 0.220 0.780 35 H 0.064 0.936 36 H 0.083 0.917 37 H 0.087 0.913 38 H 0.082 0.918 39 H 0.108 0.892 40 H 0.118 0.882 41 H 0.107 0.893 42 H 0.099 0.901 43 H 0.082 0.918 44 H 0.086 0.914 45 H 0.157 0.843 46 H 0.149 0.851 47 H 0.151 0.849 48 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -6.815 -2.959 -21.448 22.698 hybrid contribution 0.725 -0.587 0.703 1.168 sum -6.090 -3.546 -20.745 21.909 Atomic orbital electron populations 1.22058 0.95305 1.01936 1.02042 1.21379 0.93138 0.98572 0.84769 0.88225 1.20993 0.87127 0.96679 0.93631 1.42298 0.99690 1.70097 1.25141 1.19205 0.89430 1.29389 0.99164 0.91332 1.24746 0.96436 1.01684 0.98059 1.69686 1.07129 1.50665 1.30218 0.86215 0.79504 0.78921 0.81674 1.21833 1.21784 1.20836 1.47659 1.50791 1.12191 1.22510 1.21728 1.01450 0.82363 1.00835 1.20329 0.77815 0.86902 0.84273 1.90706 1.56974 1.17188 1.76678 1.21503 1.00678 0.99997 0.95108 1.21239 1.01151 0.98356 0.93465 1.22954 0.93691 0.92691 0.92128 1.86170 1.63981 1.40357 1.31122 1.19089 0.95044 0.92656 0.87471 1.21239 1.05118 0.94087 0.99895 1.21035 0.96128 1.00072 0.93553 1.20917 1.00509 0.93043 1.00838 1.21031 1.00574 0.97014 0.95008 1.17059 1.02631 0.79849 0.95903 1.91520 1.93120 1.34656 1.91719 0.91432 0.92680 0.92410 0.95568 0.96268 0.77954 0.93567 0.91663 0.91309 0.91807 0.89198 0.88236 0.89308 0.90144 0.91840 0.91398 0.84322 0.85057 0.84935 0.84151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 9.17 37.16 0.34 -1.62 16 2 C 0.12 2.13 2.80 -67.93 -0.19 1.94 16 3 H 0.10 1.97 6.90 -51.92 -0.36 1.61 16 4 C 0.14 2.92 5.56 -4.04 -0.02 2.89 16 5 N -0.73 -18.83 5.43 -59.91 -0.33 -19.16 16 6 C -0.24 -6.82 9.99 -15.06 -0.15 -6.97 16 7 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 8 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 9 N -0.93 -28.68 13.06 55.49 0.72 -27.96 16 10 Si 0.91 22.67 29.55 -169.99 -5.02 17.65 16 11 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 12 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 13 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 14 N -0.60 -9.61 2.24 -173.93 -0.39 -10.00 16 15 C 0.08 0.99 9.40 59.85 0.56 1.55 16 16 C 0.52 8.99 7.38 -10.99 -0.08 8.91 16 17 O -0.54 -11.56 15.31 5.55 0.08 -11.48 16 18 C -0.13 -1.68 4.25 -27.89 -0.12 -1.80 16 19 C -0.10 -1.40 4.87 -26.73 -0.13 -1.53 16 20 C 0.06 0.66 4.74 37.16 0.18 0.84 16 21 O -0.30 -4.17 10.00 -19.60 -0.20 -4.36 16 22 C 0.10 1.26 6.69 -39.18 -0.26 1.00 16 23 C -0.18 -1.71 9.04 -39.45 -0.36 -2.07 16 24 C -0.09 -0.67 10.04 -39.59 -0.40 -1.07 16 25 C -0.13 -0.99 10.04 -39.57 -0.40 -1.38 16 26 C -0.12 -1.05 10.02 -39.54 -0.40 -1.45 16 27 C 0.07 0.79 7.31 -39.30 -0.29 0.50 16 28 F -0.13 -1.84 17.11 2.25 0.04 -1.80 16 29 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.65 6.66 -51.93 -0.35 0.30 16 32 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.02 0.38 7.84 -51.93 -0.41 -0.03 16 34 H 0.39 10.84 7.07 -40.82 -0.29 10.56 16 35 H 0.25 7.62 8.31 -40.82 -0.34 7.28 16 36 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 37 H 0.07 0.74 6.43 -51.93 -0.33 0.41 16 38 H 0.06 0.59 6.44 -51.94 -0.33 0.25 16 39 H 0.09 0.82 7.40 -51.93 -0.38 0.44 16 40 H 0.10 1.24 8.11 -51.93 -0.42 0.81 16 41 H 0.09 1.46 8.10 -51.93 -0.42 1.04 16 42 H 0.08 1.13 8.10 -51.93 -0.42 0.70 16 43 H 0.06 0.54 7.66 -51.93 -0.40 0.14 16 44 H 0.07 0.68 7.66 -51.93 -0.40 0.28 16 45 H 0.14 1.02 6.30 -52.48 -0.33 0.69 16 46 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 47 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 48 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 LS Contribution 398.39 15.07 6.00 6.00 Total: -1.00 -35.71 398.39 -8.24 -43.95 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: -7.35 Total: 7.88 kcal Atomic # 6 Polarization: 1.08 SS G_CDS: -1.81 Total: -0.73 kcal Atomic # 7 Polarization: -57.12 SS G_CDS: 0.01 Total: -57.11 kcal Atomic # 8 Polarization: -15.73 SS G_CDS: -0.11 Total: -15.84 kcal Atomic # 9 Polarization: -1.84 SS G_CDS: 0.04 Total: -1.80 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.02 Total: 17.65 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -35.71 -8.24 -43.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753729555.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.759 kcal (2) G-P(sol) polarization free energy of solvation -35.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds