Wall clock time and date at job start Tue Mar 31 2020 21:09:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47581 * 2 1 4 4 C 1.53001 * 109.47535 * 119.99879 * 2 1 3 5 5 N 1.46493 * 109.47515 * 174.99722 * 4 2 1 6 6 C 1.36939 * 120.00258 * 179.97438 * 5 4 2 7 7 H 1.08003 * 119.99396 * 0.02562 * 6 5 4 8 8 C 1.38808 * 120.00269 * 180.02562 * 6 5 4 9 9 N 1.31622 * 119.99815 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00127 * 180.02562 * 8 6 5 11 11 H 1.48505 * 109.47321 * 90.00013 * 10 8 6 12 12 H 1.48496 * 109.47185 * 210.00397 * 10 8 6 13 13 H 1.48502 * 109.47055 * 330.00361 * 10 8 6 14 14 N 1.46504 * 109.47025 * 240.00008 * 2 1 3 15 15 C 1.46497 * 120.00154 * 299.99766 * 14 2 1 16 16 C 1.34775 * 120.00092 * 120.00238 * 14 2 1 17 17 O 1.21287 * 119.99831 * 359.97438 * 16 14 2 18 18 C 1.50697 * 120.00286 * 179.97438 * 16 14 2 19 19 C 1.52995 * 109.47523 * 179.97438 * 18 16 14 20 20 C 1.53004 * 109.47487 * 180.02562 * 19 18 16 21 21 O 1.42893 * 109.47267 * 180.02562 * 20 19 18 22 22 C 1.35956 * 117.00026 * 179.97438 * 21 20 19 23 23 C 1.38657 * 120.06128 * 359.97438 * 22 21 20 24 24 C 1.38184 * 119.96964 * 180.02562 * 23 22 21 25 25 C 1.38265 * 120.09281 * 359.97438 * 24 23 22 26 26 C 1.38248 * 120.12705 * 0.02562 * 25 24 23 27 27 C 1.38332 * 120.03366 * 359.97438 * 26 25 24 28 28 F 1.35103 * 120.05240 * 180.02562 * 27 26 25 29 29 H 1.09005 * 109.46668 * 300.00139 * 1 2 3 30 30 H 1.09000 * 109.46808 * 59.99800 * 1 2 3 31 31 H 1.08993 * 109.47134 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47084 * 295.00389 * 4 2 1 33 33 H 1.09006 * 109.46771 * 54.99486 * 4 2 1 34 34 H 0.97004 * 119.99975 * 0.02562 * 5 4 2 35 35 H 0.96999 * 119.99589 * 179.97438 * 9 8 6 36 36 H 1.08997 * 109.47493 * 270.00482 * 15 14 2 37 37 H 1.09004 * 109.46714 * 29.99944 * 15 14 2 38 38 H 1.08988 * 109.47358 * 149.99861 * 15 14 2 39 39 H 1.09004 * 109.46976 * 60.00006 * 18 16 14 40 40 H 1.09001 * 109.47011 * 300.00149 * 18 16 14 41 41 H 1.09007 * 109.47098 * 60.00288 * 19 18 16 42 42 H 1.09001 * 109.47491 * 300.00335 * 19 18 16 43 43 H 1.08994 * 109.46599 * 59.99869 * 20 19 18 44 44 H 1.09001 * 109.46881 * 300.00527 * 20 19 18 45 45 H 1.08004 * 120.01774 * 0.03769 * 23 22 21 46 46 H 1.08000 * 119.95526 * 180.27319 * 24 23 22 47 47 H 1.08001 * 119.93128 * 179.97438 * 25 24 23 48 48 H 1.07998 * 119.98480 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 3.5001 -0.8264 1.1905 6 6 4.1840 -1.4379 2.2072 7 1 3.6468 -1.8430 3.0521 8 6 5.5674 -1.5371 2.1518 9 7 6.2219 -1.0429 1.1223 10 14 6.5002 -2.3719 3.5383 11 1 6.6328 -3.8213 3.2434 12 1 7.8504 -1.7662 3.6615 13 1 5.7588 -2.1919 4.8124 14 7 2.0183 -0.6906 -1.1962 15 6 1.6644 -2.0932 -1.4280 16 6 2.7932 -0.0357 -2.0834 17 8 3.0858 1.1256 -1.8916 18 6 3.2960 -0.7462 -3.3135 19 6 4.1454 0.2156 -4.1467 20 6 4.6553 -0.5056 -5.3961 21 8 5.4491 0.3925 -6.1739 22 6 5.9828 -0.0945 -7.3256 23 6 5.7476 -1.4092 -7.6985 24 6 6.2914 -1.9024 -8.8692 25 6 7.0694 -1.0867 -9.6698 26 6 7.3064 0.2247 -9.3018 27 6 6.7646 0.7239 -8.1309 28 9 6.9955 2.0055 -7.7712 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.7517 -0.1583 2.1370 33 1 1.6054 -1.7198 1.2952 34 1 3.9825 -0.4622 0.4318 35 1 7.1887 -1.1119 1.0839 36 1 2.4157 -2.7377 -0.9717 37 1 0.6904 -2.3002 -0.9846 38 1 1.6238 -2.2852 -2.5001 39 1 2.4484 -1.0891 -3.9070 40 1 3.9017 -1.6024 -3.0165 41 1 4.9930 0.5589 -3.5535 42 1 3.5394 1.0716 -4.4437 43 1 3.8075 -0.8485 -5.9890 44 1 5.2612 -1.3618 -5.0994 45 1 5.1396 -2.0473 -7.0744 46 1 6.1045 -2.9251 -9.1617 47 1 7.4934 -1.4750 -10.5841 48 1 7.9141 0.8600 -9.9291 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753729555.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:09:19 Heat of formation + Delta-G solvation = -106.721218 kcal Electronic energy + Delta-G solvation = -28903.917854 eV Core-core repulsion = 24680.178989 eV Total energy + Delta-G solvation = -4223.738864 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.84235 -41.19987 -40.89453 -38.56192 -37.90157 -35.83669 -34.97403 -33.44987 -31.85310 -31.65702 -30.81059 -28.27721 -27.73816 -27.33627 -24.76042 -24.32105 -23.45275 -22.75098 -21.75260 -20.04649 -19.36765 -19.10575 -18.39409 -17.96530 -17.61228 -17.53618 -17.07998 -16.82975 -16.57152 -16.26691 -15.89332 -15.47633 -15.37248 -15.29024 -14.97614 -14.74773 -14.64787 -14.04010 -13.87482 -13.77522 -13.72081 -13.37594 -13.24624 -13.16419 -13.01026 -12.89360 -12.78194 -12.70062 -12.53152 -12.41916 -12.33089 -12.14701 -11.93905 -11.80061 -11.71927 -11.63921 -11.00224 -10.74875 -9.93742 -9.53896 -9.22278 -9.01220 -7.94733 -5.24860 0.13406 0.27759 1.44111 1.46839 1.55279 1.69370 1.89598 2.27733 2.54325 2.62008 3.25280 3.37982 3.52214 3.75211 3.84154 3.85824 3.90644 4.01430 4.09508 4.17877 4.26266 4.29803 4.33207 4.37980 4.38251 4.42335 4.47427 4.57331 4.61186 4.77620 4.79846 4.86845 4.92697 4.99858 5.01366 5.07681 5.10980 5.16780 5.17870 5.27179 5.32563 5.43663 5.46541 5.70576 5.73661 6.24786 6.31561 6.51131 7.27278 7.31561 8.08116 8.31290 9.28126 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.010920 B = 0.002413 C = 0.002140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2563.443752 B =11602.063593 C =13079.598142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.127 3.873 3 H 0.062 0.938 4 C 0.142 3.858 5 N -0.742 5.742 6 C -0.243 4.243 7 H 0.078 0.922 8 C -0.077 4.077 9 N -0.969 5.969 10 Si 0.975 3.025 11 H -0.282 1.282 12 H -0.300 1.300 13 H -0.270 1.270 14 N -0.599 5.599 15 C 0.075 3.925 16 C 0.503 3.497 17 O -0.595 6.595 18 C -0.120 4.120 19 C -0.099 4.099 20 C 0.065 3.935 21 O -0.339 6.339 22 C 0.075 3.925 23 C -0.187 4.187 24 C -0.083 4.083 25 C -0.127 4.127 26 C -0.118 4.118 27 C 0.023 3.977 28 F -0.156 7.156 29 H 0.076 0.924 30 H 0.063 0.937 31 H 0.080 0.920 32 H 0.026 0.974 33 H 0.038 0.962 34 H 0.371 0.629 35 H 0.248 0.752 36 H 0.040 0.960 37 H 0.092 0.908 38 H 0.104 0.896 39 H 0.140 0.860 40 H 0.106 0.894 41 H 0.042 0.958 42 H 0.067 0.933 43 H 0.099 0.901 44 H 0.078 0.922 45 H 0.159 0.841 46 H 0.167 0.833 47 H 0.168 0.832 48 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.811 -7.233 -23.348 25.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.023 3.977 3 H 0.080 0.920 4 C 0.015 3.985 5 N -0.385 5.385 6 C -0.375 4.375 7 H 0.096 0.904 8 C -0.270 4.270 9 N -0.620 5.620 10 Si 0.804 3.196 11 H -0.209 1.209 12 H -0.227 1.227 13 H -0.194 1.194 14 N -0.331 5.331 15 C -0.067 4.067 16 C 0.293 3.707 17 O -0.476 6.476 18 C -0.160 4.160 19 C -0.138 4.138 20 C -0.009 4.009 21 O -0.253 6.253 22 C 0.029 3.971 23 C -0.205 4.205 24 C -0.101 4.101 25 C -0.145 4.145 26 C -0.137 4.137 27 C 0.003 3.997 28 F -0.135 7.135 29 H 0.095 0.905 30 H 0.082 0.918 31 H 0.099 0.901 32 H 0.043 0.957 33 H 0.056 0.944 34 H 0.202 0.798 35 H 0.057 0.943 36 H 0.059 0.941 37 H 0.110 0.890 38 H 0.122 0.878 39 H 0.158 0.842 40 H 0.124 0.876 41 H 0.061 0.939 42 H 0.086 0.914 43 H 0.117 0.883 44 H 0.096 0.904 45 H 0.176 0.824 46 H 0.184 0.816 47 H 0.185 0.815 48 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -8.671 -6.498 -22.944 25.374 hybrid contribution 1.238 0.480 1.145 1.753 sum -7.434 -6.017 -21.799 23.805 Atomic orbital electron populations 1.21957 0.91201 1.03739 1.03036 1.21247 0.96106 0.96228 0.84143 0.92018 1.21203 0.84131 0.97854 0.95300 1.42524 1.02028 1.69777 1.24126 1.19647 0.89947 1.28306 0.99616 0.90396 1.25612 0.97541 1.03155 1.00651 1.69879 1.06842 1.52775 1.32484 0.85112 0.77469 0.77907 0.79077 1.20886 1.22704 1.19442 1.47826 1.50103 1.13581 1.21545 1.21981 1.01649 0.79419 1.03643 1.21242 0.77227 0.86588 0.85657 1.90677 1.58951 1.19864 1.78147 1.21504 1.02122 0.98973 0.93381 1.21117 0.99479 0.98767 0.94392 1.22962 0.94858 0.91919 0.91173 1.86104 1.64966 1.41953 1.32320 1.19420 0.96221 0.94149 0.87313 1.21548 1.05227 0.92896 1.00842 1.21519 0.94617 1.01572 0.92366 1.21392 0.99404 0.91993 1.01699 1.21349 1.00140 0.98223 0.93954 1.17644 1.04783 0.79413 0.97814 1.91443 1.93546 1.36317 1.92168 0.90464 0.91759 0.90071 0.95664 0.94369 0.79759 0.94277 0.94090 0.88962 0.87789 0.84218 0.87580 0.93932 0.91402 0.88326 0.90352 0.82370 0.81555 0.81465 0.82468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.25 9.17 71.98 0.66 -2.59 16 2 C 0.13 4.32 2.80 44.99 0.13 4.45 16 3 H 0.06 2.58 6.90 -2.38 -0.02 2.56 16 4 C 0.14 5.71 5.56 86.38 0.48 6.19 16 5 N -0.74 -39.19 5.43 -343.46 -1.87 -41.06 16 6 C -0.24 -13.88 9.99 84.03 0.84 -13.04 16 7 H 0.08 4.21 7.83 -2.91 -0.02 4.18 16 8 C -0.08 -4.57 5.50 84.86 0.47 -4.11 16 9 N -0.97 -61.83 13.06 21.65 0.28 -61.55 16 10 Si 0.98 47.11 29.55 68.60 2.03 49.14 16 11 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 12 H -0.30 -14.80 7.11 99.48 0.71 -14.09 16 13 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 14 N -0.60 -18.87 2.24 -822.59 -1.85 -20.72 16 15 C 0.07 1.66 9.40 127.77 1.20 2.86 16 16 C 0.50 17.85 7.38 87.66 0.65 18.50 16 17 O -0.60 -27.44 15.31 -3.05 -0.05 -27.49 16 18 C -0.12 -2.96 4.25 29.85 0.13 -2.83 16 19 C -0.10 -2.82 4.87 30.59 0.15 -2.67 16 20 C 0.07 1.41 4.74 71.98 0.34 1.75 16 21 O -0.34 -9.84 10.00 -93.06 -0.93 -10.77 16 22 C 0.07 1.85 6.69 22.53 0.15 2.00 16 23 C -0.19 -3.08 9.04 22.36 0.20 -2.88 16 24 C -0.08 -0.96 10.04 22.26 0.22 -0.73 16 25 C -0.13 -1.47 10.04 22.28 0.22 -1.24 16 26 C -0.12 -2.00 10.02 22.29 0.22 -1.78 16 27 C 0.02 0.58 7.31 22.45 0.16 0.75 16 28 F -0.16 -4.79 17.11 44.97 0.77 -4.02 16 29 H 0.08 1.64 8.14 -2.38 -0.02 1.62 16 30 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.08 1.50 6.66 -2.39 -0.02 1.49 16 32 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.04 1.41 7.84 -2.38 -0.02 1.39 16 34 H 0.37 21.72 7.07 -92.71 -0.65 21.07 16 35 H 0.25 15.43 8.31 -92.71 -0.77 14.66 16 36 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.09 1.62 6.43 -2.38 -0.02 1.60 16 38 H 0.10 1.46 6.44 -2.39 -0.02 1.45 16 39 H 0.14 2.02 7.40 -2.39 -0.02 2.00 16 40 H 0.11 2.52 8.11 -2.39 -0.02 2.50 16 41 H 0.04 1.57 8.10 -2.38 -0.02 1.55 16 42 H 0.07 2.05 8.10 -2.39 -0.02 2.03 16 43 H 0.10 1.42 7.66 -2.39 -0.02 1.40 16 44 H 0.08 1.50 7.66 -2.39 -0.02 1.48 16 45 H 0.16 1.85 6.30 -2.91 -0.02 1.83 16 46 H 0.17 0.76 8.06 -2.91 -0.02 0.74 16 47 H 0.17 0.76 8.06 -2.91 -0.02 0.74 16 48 H 0.16 1.96 8.06 -2.91 -0.02 1.94 16 Total: -1.00 -85.12 398.39 4.93 -80.20 By element: Atomic # 1 Polarization: 31.33 SS G_CDS: 0.31 Total: 31.64 kcal Atomic # 6 Polarization: -1.60 SS G_CDS: 6.23 Total: 4.63 kcal Atomic # 7 Polarization: -119.90 SS G_CDS: -3.43 Total: -123.32 kcal Atomic # 8 Polarization: -37.28 SS G_CDS: -0.98 Total: -38.26 kcal Atomic # 9 Polarization: -4.79 SS G_CDS: 0.77 Total: -4.02 kcal Atomic # 14 Polarization: 47.11 SS G_CDS: 2.03 Total: 49.14 kcal Total: -85.12 4.93 -80.20 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753729555.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.526 kcal (2) G-P(sol) polarization free energy of solvation -85.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds