Wall clock time and date at job start Tue Mar 31 2020 21:39:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 C 1.52996 * 109.47151 * 320.67895 * 3 2 1 5 5 N 1.46913 * 109.46823 * 180.02562 * 4 3 2 6 6 C 1.46898 * 110.99856 * 293.95574 * 5 4 3 7 7 C 1.46903 * 110.99556 * 170.00394 * 5 4 3 8 8 C 1.52999 * 109.46491 * 190.00079 * 7 5 4 9 9 C 1.53004 * 109.47001 * 179.97438 * 8 7 5 10 10 C 1.53346 * 109.41904 * 295.13027 * 9 8 7 11 11 C 1.53195 * 109.14901 * 178.67276 * 10 9 8 12 12 N 1.46919 * 108.89273 * 54.57640 * 11 10 9 13 13 C 1.34778 * 120.63255 * 126.34238 * 12 11 10 14 14 O 1.21279 * 120.00169 * 359.97438 * 13 12 11 15 15 C 1.50698 * 120.00023 * 179.97438 * 13 12 11 16 16 S 1.81004 * 109.47124 * 179.97438 * 15 13 12 17 17 C 1.76202 * 100.00170 * 179.97438 * 16 15 13 18 18 H 1.08000 * 119.99808 * 0.02562 * 17 16 15 19 19 C 1.38802 * 119.99850 * 179.97438 * 17 16 15 20 20 N 1.31629 * 120.00032 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99655 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47523 * 60.00095 * 21 19 17 23 23 H 1.48500 * 109.47094 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47100 * 300.00003 * 21 19 17 25 25 C 1.46933 * 118.74003 * 306.32349 * 12 11 10 26 26 C 1.53034 * 109.46014 * 174.99893 * 9 8 7 27 27 H 4.44645 * 5.63399 * 179.97438 * 4 1 2 28 28 H 1.09007 * 109.46768 * 200.68236 * 3 2 1 29 29 H 1.08994 * 109.46838 * 80.68570 * 3 2 1 30 30 H 1.08997 * 109.46941 * 60.00531 * 4 3 2 31 31 H 1.08994 * 109.47801 * 300.00085 * 4 3 2 32 32 H 1.08997 * 109.47449 * 296.04741 * 6 5 4 33 33 H 1.09000 * 109.46956 * 56.04567 * 6 5 4 34 34 H 1.09000 * 109.47017 * 176.04671 * 6 5 4 35 35 H 1.08991 * 109.47076 * 70.00092 * 7 5 4 36 36 H 1.08999 * 109.46965 * 309.99622 * 7 5 4 37 37 H 1.09001 * 109.47533 * 60.00207 * 8 7 5 38 38 H 1.08997 * 109.47446 * 299.99874 * 8 7 5 39 39 H 1.09001 * 109.45799 * 55.03056 * 9 8 7 40 40 H 1.08997 * 109.68637 * 58.70485 * 10 9 8 41 41 H 1.09002 * 109.47277 * 298.50741 * 10 9 8 42 42 H 1.09002 * 109.58720 * 294.71670 * 11 10 9 43 43 H 1.08996 * 109.58651 * 174.43567 * 11 10 9 44 44 H 1.09001 * 109.47488 * 299.99559 * 15 13 12 45 45 H 1.09001 * 109.47269 * 59.99982 * 15 13 12 46 46 H 0.96996 * 119.99581 * 180.02562 * 20 19 17 47 47 H 1.08994 * 109.58580 * 173.39910 * 25 12 11 48 48 H 1.09006 * 109.57831 * 293.67403 * 25 12 11 49 49 H 1.08994 * 109.50232 * 61.43679 * 26 9 8 50 50 H 1.09007 * 109.52628 * 301.35340 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1565 -1.1150 0.9140 5 7 4.6256 -1.1139 0.9145 6 6 5.1527 -1.4767 -0.4078 7 6 5.1524 -2.0077 1.9545 8 6 6.6611 -1.7951 2.0933 9 6 7.2098 -2.7255 3.1769 10 6 6.6148 -2.3333 4.5347 11 6 7.1422 -3.2891 5.6095 12 7 8.6108 -3.2867 5.5690 13 6 9.3281 -3.0374 6.6825 14 8 8.7616 -2.8118 7.7309 15 6 10.8339 -3.0391 6.6249 16 16 11.5010 -2.6735 8.2674 17 6 13.2268 -2.7384 7.9182 18 1 13.5673 -2.9558 6.9165 19 6 14.1487 -2.5090 8.9301 20 7 13.7337 -2.2435 10.1508 21 14 15.9783 -2.5771 8.5597 22 1 16.3136 -1.5593 7.5316 23 1 16.7453 -2.2980 9.8003 24 1 16.3308 -3.9276 8.0526 25 6 9.2828 -3.5616 4.2917 26 6 8.7343 -2.6035 3.2297 27 1 -1.0498 -0.0002 0.0004 28 1 3.0089 0.9623 0.3630 29 1 3.0093 -0.1655 -1.0141 30 1 2.7937 -2.0766 0.5511 31 1 2.7932 -0.9489 1.9281 32 1 4.8625 -2.4999 -0.6465 33 1 4.7467 -0.7993 -1.1591 34 1 6.2400 -1.4001 -0.3991 35 1 4.9553 -3.0432 1.6776 36 1 4.6654 -1.7866 2.9043 37 1 6.8582 -0.7594 2.3703 38 1 7.1481 -2.0161 1.1435 39 1 6.9357 -3.7546 2.9448 40 1 5.5276 -2.3983 4.4918 41 1 6.9092 -1.3127 4.7794 42 1 6.7729 -4.2962 5.4159 43 1 6.8031 -2.9581 6.5911 44 1 11.1841 -4.0189 6.3001 45 1 11.1714 -2.2802 5.9190 46 1 14.3780 -2.0829 10.8578 47 1 10.3561 -3.4081 4.4030 48 1 9.0902 -4.5918 3.9919 49 1 9.0088 -1.5804 3.4864 50 1 9.1542 -2.8597 2.2569 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753816282.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:39:07 Heat of formation + Delta-G solvation = 7.003799 kcal Electronic energy + Delta-G solvation = -26087.561158 eV Core-core repulsion = 22434.966957 eV Total energy + Delta-G solvation = -3652.594202 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.177 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.01574 -38.71547 -37.35672 -34.94850 -33.75720 -32.41585 -31.53553 -30.86271 -29.47481 -28.41461 -27.08372 -25.48729 -24.76873 -23.26376 -22.43942 -21.20130 -20.50412 -19.00983 -18.55561 -17.67455 -16.70405 -16.25665 -16.14770 -15.57520 -15.32976 -15.10862 -14.94265 -14.79233 -14.47791 -14.16948 -13.93831 -13.78908 -13.51306 -13.34383 -13.11657 -12.92434 -12.78406 -12.58023 -12.31770 -12.26247 -11.91243 -11.83746 -11.76412 -11.36245 -11.25009 -11.03241 -11.02705 -10.98197 -10.75336 -10.71693 -10.51731 -10.46779 -10.39470 -9.79484 -9.30342 -9.04690 -8.80838 -8.46870 -8.20920 -6.48507 -6.20091 -3.90689 2.34862 2.42328 2.97784 3.09357 3.24231 3.27104 3.30153 3.38793 3.62915 4.08106 4.21607 4.38132 4.50826 4.53051 4.64876 4.67716 4.80085 4.88777 4.93770 5.01337 5.04959 5.11753 5.13246 5.14902 5.22297 5.27422 5.28923 5.41185 5.41464 5.48481 5.52635 5.56428 5.59873 5.62744 5.65898 5.70557 5.75533 5.85505 5.88899 5.93099 5.99227 6.03400 6.13632 6.26512 6.57843 6.60109 6.70960 7.19326 7.59795 7.61911 8.36226 8.60629 9.24938 10.87291 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.026591 B = 0.001654 C = 0.001611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.745064 B =16925.821164 C =17372.570894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.187 4.187 3 C -0.011 4.011 4 C 0.060 3.940 5 N -0.543 5.543 6 C 0.016 3.984 7 C 0.054 3.946 8 C -0.110 4.110 9 C -0.085 4.085 10 C -0.129 4.129 11 C 0.112 3.888 12 N -0.619 5.619 13 C 0.535 3.465 14 O -0.519 6.519 15 C -0.150 4.150 16 S -0.062 6.062 17 C -0.536 4.536 18 H 0.072 0.928 19 C 0.074 3.926 20 N -0.868 5.868 21 Si 0.918 3.082 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.274 1.274 25 C 0.108 3.892 26 C -0.129 4.129 27 H 0.217 0.783 28 H 0.096 0.904 29 H 0.086 0.914 30 H 0.037 0.963 31 H 0.079 0.921 32 H 0.025 0.975 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.034 0.966 36 H 0.078 0.922 37 H 0.073 0.927 38 H 0.063 0.937 39 H 0.070 0.930 40 H 0.072 0.928 41 H 0.069 0.931 42 H 0.060 0.940 43 H 0.092 0.908 44 H 0.088 0.912 45 H 0.089 0.911 46 H 0.269 0.731 47 H 0.089 0.911 48 H 0.065 0.935 49 H 0.070 0.930 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.832 -0.015 -24.117 31.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.187 4.187 3 C -0.048 4.048 4 C -0.068 4.068 5 N -0.266 5.266 6 C -0.132 4.132 7 C -0.073 4.073 8 C -0.148 4.148 9 C -0.104 4.104 10 C -0.167 4.167 11 C -0.011 4.011 12 N -0.356 5.356 13 C 0.323 3.677 14 O -0.393 6.393 15 C -0.301 4.301 16 S 0.165 5.835 17 C -0.684 4.684 18 H 0.090 0.910 19 C -0.135 4.135 20 N -0.503 5.503 21 Si 0.744 3.256 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.199 1.199 25 C -0.015 4.015 26 C -0.167 4.167 27 H 0.234 0.766 28 H 0.114 0.886 29 H 0.104 0.896 30 H 0.055 0.945 31 H 0.098 0.902 32 H 0.044 0.956 33 H 0.087 0.913 34 H 0.092 0.908 35 H 0.052 0.948 36 H 0.097 0.903 37 H 0.092 0.908 38 H 0.082 0.918 39 H 0.088 0.912 40 H 0.091 0.909 41 H 0.088 0.912 42 H 0.079 0.921 43 H 0.110 0.890 44 H 0.107 0.893 45 H 0.107 0.893 46 H 0.079 0.921 47 H 0.107 0.893 48 H 0.083 0.917 49 H 0.089 0.911 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -21.446 0.832 -22.240 30.907 hybrid contribution 1.339 -1.157 -1.789 2.516 sum -20.107 -0.325 -24.029 31.333 Atomic orbital electron populations 1.24940 0.96010 1.00797 1.00891 1.23079 0.94506 1.00576 1.00554 1.18713 0.84265 1.00817 1.00974 1.22028 0.87435 0.96920 1.00404 1.61965 1.06783 1.52719 1.05181 1.22520 1.01325 0.98862 0.90477 1.22230 0.96204 0.93867 0.95017 1.21632 0.93907 1.00689 0.98528 1.21176 0.95108 0.99470 0.94663 1.22081 1.00077 1.00326 0.94251 1.21498 0.80003 0.98927 1.00647 1.48096 1.06185 1.72260 1.09043 1.20324 0.89321 0.75288 0.82802 1.90684 1.72103 1.47306 1.29225 1.23551 0.93693 1.04799 1.08036 1.85403 1.03165 1.92119 1.02792 1.22821 0.91100 1.56123 0.98354 0.91019 1.24982 0.99568 0.94530 0.94429 1.70009 1.35003 1.44525 1.00738 0.86235 0.82747 0.78734 0.77844 1.19946 1.20809 1.19946 1.21702 0.98093 0.98522 0.83226 1.21957 0.95146 1.00771 0.98837 0.76634 0.88556 0.89561 0.94485 0.90247 0.95599 0.91251 0.90774 0.94807 0.90341 0.90848 0.91831 0.91198 0.90918 0.91209 0.92133 0.88993 0.89345 0.89305 0.92143 0.89258 0.91671 0.91117 0.90824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.40 19.25 29.55 0.57 -0.83 16 2 C -0.19 -1.40 13.34 -37.12 -0.50 -1.90 16 3 C -0.01 -0.07 5.63 -29.52 -0.17 -0.23 16 4 C 0.06 0.39 4.91 -3.82 -0.02 0.37 16 5 N -0.54 -3.67 4.76 -242.92 -1.16 -4.83 16 6 C 0.02 0.09 9.13 60.06 0.55 0.64 16 7 C 0.05 0.36 4.72 -3.82 -0.02 0.35 16 8 C -0.11 -0.76 4.61 -26.73 -0.12 -0.88 16 9 C -0.09 -0.66 2.15 -90.42 -0.19 -0.85 16 10 C -0.13 -1.20 5.16 -26.45 -0.14 -1.33 16 11 C 0.11 1.35 6.42 -3.71 -0.02 1.33 16 12 N -0.62 -8.85 2.97 -172.77 -0.51 -9.37 16 13 C 0.53 10.35 7.72 -10.99 -0.08 10.26 16 14 O -0.52 -12.06 15.27 5.56 0.08 -11.98 16 15 C -0.15 -3.09 4.50 36.00 0.16 -2.93 16 16 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 17 C -0.54 -15.30 9.50 30.94 0.29 -15.01 16 18 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 19 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 20 N -0.87 -26.25 13.22 55.49 0.73 -25.51 16 21 Si 0.92 21.40 29.55 -169.99 -5.02 16.38 16 22 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 25 C 0.11 1.17 6.34 -3.71 -0.02 1.15 16 26 C -0.13 -1.12 5.36 -26.62 -0.14 -1.26 16 27 H 0.22 0.74 7.80 -54.10 -0.42 0.32 16 28 H 0.10 0.58 8.14 -51.92 -0.42 0.16 16 29 H 0.09 0.44 6.47 -51.93 -0.34 0.11 16 30 H 0.04 0.24 8.12 -51.93 -0.42 -0.18 16 31 H 0.08 0.53 7.93 -51.93 -0.41 0.12 16 32 H 0.03 0.14 8.14 -51.93 -0.42 -0.28 16 33 H 0.07 0.33 6.30 -51.93 -0.33 0.00 16 34 H 0.07 0.41 6.47 -51.93 -0.34 0.07 16 35 H 0.03 0.23 8.12 -51.93 -0.42 -0.20 16 36 H 0.08 0.54 6.32 -51.93 -0.33 0.21 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.41 6.55 -51.93 -0.34 0.07 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.07 0.56 6.52 -51.93 -0.34 0.22 16 41 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.09 1.31 7.00 -51.93 -0.36 0.94 16 44 H 0.09 1.68 7.94 -51.92 -0.41 1.27 16 45 H 0.09 1.69 7.69 -51.91 -0.40 1.29 16 46 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 47 H 0.09 1.01 5.93 -51.93 -0.31 0.70 16 48 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 49 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 50 H 0.07 0.52 8.14 -51.92 -0.42 0.10 16 LS Contribution 410.50 15.07 6.19 6.19 Total: -1.00 -34.53 410.50 -10.37 -44.89 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: -8.52 Total: -2.75 kcal Atomic # 6 Polarization: -9.17 SS G_CDS: 0.05 Total: -9.12 kcal Atomic # 7 Polarization: -38.77 SS G_CDS: -0.94 Total: -39.71 kcal Atomic # 8 Polarization: -12.06 SS G_CDS: 0.08 Total: -11.98 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -34.53 -10.37 -44.89 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753816282.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.897 kcal (2) G-P(sol) polarization free energy of solvation -34.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.893 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds