Wall clock time and date at job start Tue Mar 31 2020 21:17:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09008 * 109.46946 * 2 1 4 4 O 1.42896 * 109.46974 * 240.00679 * 2 1 3 5 5 C 1.35953 * 117.00514 * 83.96245 * 4 2 1 6 6 C 1.38663 * 120.06036 * 354.97330 * 5 4 2 7 7 C 1.38181 * 119.96553 * 179.72419 * 6 5 4 8 8 C 1.38265 * 120.10033 * 0.56231 * 7 6 5 9 9 C 1.38251 * 120.12060 * 359.71998 * 8 7 6 10 10 C 1.38334 * 120.03310 * 359.97438 * 9 8 7 11 11 F 1.35101 * 120.04949 * 180.02562 * 10 9 8 12 12 C 1.50696 * 109.47313 * 120.00344 * 2 1 3 13 13 O 1.21277 * 120.00097 * 101.16176 * 12 2 1 14 14 N 1.34779 * 119.99650 * 281.15190 * 12 2 1 15 15 C 1.46495 * 120.00161 * 5.19632 * 14 12 2 16 16 C 1.46502 * 119.99828 * 185.18687 * 14 12 2 17 17 C 1.52997 * 109.47680 * 270.00719 * 16 14 12 18 18 C 1.52994 * 109.47740 * 179.97438 * 17 16 14 19 19 N 1.46494 * 109.47392 * 179.97438 * 18 17 16 20 20 C 1.46502 * 119.99853 * 90.00301 * 19 18 17 21 21 C 1.36938 * 120.00143 * 270.00079 * 19 18 17 22 22 H 1.08002 * 119.99977 * 18.89618 * 21 19 18 23 23 C 1.38813 * 119.99981 * 198.89640 * 21 19 18 24 24 N 1.31618 * 120.00301 * 12.02443 * 23 21 19 25 25 Si 1.86804 * 119.99743 * 192.03403 * 23 21 19 26 26 H 1.48501 * 109.47347 * 90.00121 * 25 23 21 27 27 H 1.48506 * 109.46918 * 209.99444 * 25 23 21 28 28 H 1.48494 * 109.47046 * 329.99690 * 25 23 21 29 29 H 1.09007 * 109.47189 * 172.21819 * 1 2 3 30 30 H 1.08999 * 109.47299 * 292.21044 * 1 2 3 31 31 H 1.08993 * 109.47692 * 52.21573 * 1 2 3 32 32 H 1.07995 * 120.01354 * 359.97438 * 6 5 4 33 33 H 1.08006 * 119.94717 * 180.27855 * 7 6 5 34 34 H 1.07992 * 119.93780 * 179.74541 * 8 7 6 35 35 H 1.07999 * 119.98491 * 179.97438 * 9 8 7 36 36 H 1.08995 * 109.47235 * 269.53874 * 15 14 12 37 37 H 1.09000 * 109.47362 * 29.54355 * 15 14 12 38 38 H 1.09007 * 109.47008 * 149.53922 * 15 14 12 39 39 H 1.09000 * 109.46846 * 30.00941 * 16 14 12 40 40 H 1.08996 * 109.47068 * 150.00213 * 16 14 12 41 41 H 1.09004 * 109.46893 * 300.00463 * 17 16 14 42 42 H 1.09005 * 109.47286 * 59.99798 * 17 16 14 43 43 H 1.09000 * 109.47026 * 300.00370 * 18 17 16 44 44 H 1.09005 * 109.46685 * 59.99688 * 18 17 16 45 45 H 1.08999 * 109.47180 * 93.35844 * 20 19 18 46 46 H 1.08997 * 109.46953 * 213.35382 * 20 19 18 47 47 H 1.08993 * 109.47454 * 333.35520 * 20 19 18 48 48 H 0.97002 * 120.00108 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 8 2.0062 -0.6735 -1.1668 5 6 2.0919 0.0576 -2.3099 6 6 1.6282 1.3642 -2.3351 7 6 1.7214 2.1073 -3.4963 8 6 2.2658 1.5464 -4.6367 9 6 2.7240 0.2421 -4.6176 10 6 2.6390 -0.5046 -3.4562 11 9 3.0871 -1.7790 -3.4370 12 6 2.0323 -0.7105 1.2304 13 8 2.4262 -1.8548 1.1515 14 7 2.0441 -0.0740 2.4184 15 6 1.4643 1.2660 2.5372 16 6 2.6366 -0.7224 3.5909 17 6 1.5637 -1.5304 4.3236 18 6 2.1826 -2.2081 5.5477 19 7 1.1551 -2.9813 6.2495 20 6 0.9241 -4.3839 5.8951 21 6 0.4107 -2.3930 7.2369 22 1 0.3509 -1.3164 7.2993 23 6 -0.2672 -3.1803 8.1575 24 7 -0.0128 -4.4694 8.2347 25 14 -1.5407 -2.4103 9.2866 26 1 -2.8744 -2.4601 8.6353 27 1 -1.5866 -3.1622 10.5664 28 1 -1.1736 -0.9969 9.5556 29 1 -0.3634 -1.0183 -0.1392 30 1 -0.3634 0.3885 0.9514 31 1 -0.3634 0.6296 -0.8121 32 1 1.1981 1.8020 -1.4464 33 1 1.3642 3.1265 -3.5143 34 1 2.3336 2.1282 -5.5440 35 1 3.1485 -0.1940 -5.5098 36 1 2.2337 2.0134 2.3435 37 1 0.6577 1.3786 1.8127 38 1 1.0698 1.4033 3.5441 39 1 3.4382 -1.3884 3.2714 40 1 3.0404 0.0368 4.2606 41 1 0.7621 -0.8644 4.6429 42 1 1.1599 -2.2897 3.6538 43 1 2.9840 -2.8742 5.2279 44 1 2.5867 -1.4491 6.2176 45 1 1.5182 -5.0256 6.5458 46 1 -0.1327 -4.6204 6.0182 47 1 1.2150 -4.5492 4.8578 48 1 -0.4862 -5.0195 8.8783 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755038405.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:36 Heat of formation + Delta-G solvation = -55.037291 kcal Electronic energy + Delta-G solvation = -29193.992770 eV Core-core repulsion = 24972.495088 eV Total energy + Delta-G solvation = -4221.497681 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -48.99967 -40.98209 -39.62954 -37.77553 -36.26060 -35.39806 -33.08149 -31.85967 -31.09933 -30.17684 -29.80796 -27.14008 -26.11138 -25.69366 -24.53853 -23.28591 -22.77508 -21.86737 -20.19606 -19.41460 -19.00192 -17.50550 -17.32812 -16.67321 -16.66691 -16.29875 -16.04771 -15.63192 -15.37220 -15.00432 -14.85836 -14.78781 -14.31669 -14.04790 -13.61361 -13.42416 -13.31764 -13.19350 -13.05964 -12.79433 -12.72146 -12.54454 -12.36494 -12.13746 -11.99746 -11.69654 -11.52650 -11.41852 -11.22807 -10.94815 -10.81861 -10.68308 -10.36469 -10.10967 -9.84825 -9.77687 -9.71024 -9.36816 -8.75234 -8.59456 -8.45768 -6.71798 -5.66612 -3.09850 0.68499 0.82300 2.20519 2.47150 3.14349 3.19202 3.39520 3.44723 3.47009 3.86513 4.05702 4.26668 4.34118 4.42446 4.50613 4.53133 4.74553 4.77966 4.78971 4.98116 5.11005 5.16183 5.20532 5.32361 5.40790 5.45699 5.51127 5.52900 5.61217 5.73393 5.76177 5.80183 5.92935 6.00572 6.03218 6.19699 6.20737 6.50573 6.58311 6.80733 6.88053 6.89529 7.06541 7.25156 7.53208 7.76820 7.88315 8.05155 8.44390 9.29732 9.94338 10.42582 11.38739 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.023375 B = 0.002054 C = 0.001980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.585788 B =13630.493033 C =14135.205449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.069 3.931 3 H 0.096 0.904 4 O -0.277 6.277 5 C 0.101 3.899 6 C -0.187 4.187 7 C -0.089 4.089 8 C -0.131 4.131 9 C -0.116 4.116 10 C 0.071 3.929 11 F -0.129 7.129 12 C 0.516 3.484 13 O -0.507 6.507 14 N -0.610 5.610 15 C 0.065 3.935 16 C 0.118 3.882 17 C -0.152 4.152 18 C 0.156 3.844 19 N -0.605 5.605 20 C 0.165 3.835 21 C -0.249 4.249 22 H 0.068 0.932 23 C -0.004 4.004 24 N -0.911 5.911 25 Si 0.905 3.095 26 H -0.289 1.289 27 H -0.291 1.291 28 H -0.281 1.281 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.075 0.925 32 H 0.140 0.860 33 H 0.133 0.867 34 H 0.134 0.866 35 H 0.142 0.858 36 H 0.058 0.942 37 H 0.072 0.928 38 H 0.082 0.918 39 H 0.080 0.920 40 H 0.077 0.923 41 H 0.059 0.941 42 H 0.058 0.942 43 H 0.037 0.963 44 H 0.045 0.955 45 H 0.024 0.976 46 H 0.050 0.950 47 H -0.005 1.005 48 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.645 18.229 -25.038 31.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.009 3.991 3 H 0.113 0.887 4 O -0.189 6.189 5 C 0.054 3.946 6 C -0.206 4.206 7 C -0.107 4.107 8 C -0.150 4.150 9 C -0.135 4.135 10 C 0.051 3.949 11 F -0.107 7.107 12 C 0.301 3.699 13 O -0.380 6.380 14 N -0.345 5.345 15 C -0.078 4.078 16 C -0.003 4.003 17 C -0.193 4.193 18 C 0.027 3.973 19 N -0.328 5.328 20 C 0.020 3.980 21 C -0.379 4.379 22 H 0.086 0.914 23 C -0.202 4.202 24 N -0.557 5.557 25 Si 0.736 3.264 26 H -0.216 1.216 27 H -0.218 1.218 28 H -0.206 1.206 29 H 0.100 0.900 30 H 0.105 0.895 31 H 0.094 0.906 32 H 0.157 0.843 33 H 0.151 0.849 34 H 0.152 0.848 35 H 0.160 0.840 36 H 0.076 0.924 37 H 0.091 0.909 38 H 0.101 0.899 39 H 0.099 0.901 40 H 0.096 0.904 41 H 0.078 0.922 42 H 0.077 0.923 43 H 0.055 0.945 44 H 0.063 0.937 45 H 0.042 0.958 46 H 0.068 0.932 47 H 0.014 0.986 48 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 3.862 17.187 -24.890 30.493 hybrid contribution -0.871 0.428 0.759 1.232 sum 2.991 17.615 -24.132 30.026 Atomic orbital electron populations 1.22452 0.92290 1.05159 1.04007 1.22309 0.96154 0.96724 0.83948 0.88655 1.86307 1.80704 1.36829 1.15089 1.19126 0.97489 0.91449 0.86560 1.21248 1.05535 0.93162 1.00662 1.21030 0.97778 0.99929 0.91990 1.20945 1.00405 0.94545 0.99082 1.21064 1.01078 0.94869 0.96493 1.17048 1.03515 0.81123 0.93176 1.91542 1.86953 1.35289 1.96945 1.19917 0.79347 0.86886 0.83781 1.90775 1.45526 1.16605 1.85117 1.47828 1.59809 1.17767 1.09068 1.22040 0.98380 0.83173 1.04219 1.21656 0.96870 0.96854 0.84969 1.22623 0.98251 0.99404 0.99037 1.20608 0.90739 0.94370 0.91548 1.43927 1.39595 1.09058 1.40214 1.20798 1.00607 0.84213 0.92369 1.19212 1.22763 0.91186 1.04702 0.91382 1.24976 1.01130 0.95978 0.98104 1.70106 1.43217 1.04675 1.37687 0.86236 0.81813 0.78258 0.80108 1.21638 1.21780 1.20612 0.90013 0.89504 0.90566 0.84278 0.84930 0.84791 0.83979 0.92393 0.90931 0.89910 0.90114 0.90423 0.92175 0.92270 0.94490 0.93656 0.95791 0.93176 0.98622 0.93823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.57 8.82 37.16 0.33 -1.25 16 2 C 0.07 0.74 1.82 -27.89 -0.05 0.69 16 3 H 0.10 0.72 5.70 -51.92 -0.30 0.43 16 4 O -0.28 -3.76 9.27 -38.76 -0.36 -4.12 16 5 C 0.10 1.10 6.60 -39.18 -0.26 0.84 16 6 C -0.19 -1.41 8.29 -39.45 -0.33 -1.73 16 7 C -0.09 -0.52 10.04 -39.59 -0.40 -0.91 16 8 C -0.13 -0.77 10.04 -39.57 -0.40 -1.17 16 9 C -0.12 -0.90 10.02 -39.54 -0.40 -1.29 16 10 C 0.07 0.79 7.31 -39.30 -0.29 0.50 16 11 F -0.13 -1.75 17.11 2.25 0.04 -1.71 16 12 C 0.52 7.47 6.94 -10.99 -0.08 7.39 16 13 O -0.51 -9.87 16.24 -13.61 -0.22 -10.09 16 14 N -0.61 -7.57 2.87 -181.58 -0.52 -8.09 16 15 C 0.06 0.51 9.82 59.84 0.59 1.10 16 16 C 0.12 1.68 5.37 -4.04 -0.02 1.66 16 17 C -0.15 -2.73 5.86 -26.74 -0.16 -2.89 16 18 C 0.16 3.26 5.65 -4.05 -0.02 3.24 16 19 N -0.61 -15.84 2.93 -181.13 -0.53 -16.37 16 20 C 0.16 4.35 8.97 59.85 0.54 4.89 16 21 C -0.25 -6.95 9.70 -15.06 -0.15 -7.10 16 22 H 0.07 1.82 7.86 -52.49 -0.41 1.41 16 23 C 0.00 -0.13 5.13 -17.43 -0.09 -0.22 16 24 N -0.91 -27.33 10.43 55.49 0.58 -26.75 16 25 Si 0.91 22.11 29.57 -169.99 -5.03 17.08 16 26 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 27 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 28 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 29 H 0.08 0.88 8.14 -51.92 -0.42 0.45 16 30 H 0.09 0.64 5.96 -51.93 -0.31 0.33 16 31 H 0.08 0.49 6.76 -51.93 -0.35 0.14 16 32 H 0.14 0.74 5.29 -52.49 -0.28 0.47 16 33 H 0.13 0.41 8.06 -52.48 -0.42 -0.01 16 34 H 0.13 0.43 8.06 -52.49 -0.42 0.01 16 35 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 36 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.07 0.43 4.59 -51.93 -0.24 0.19 16 38 H 0.08 0.65 8.08 -51.93 -0.42 0.23 16 39 H 0.08 1.25 7.50 -51.93 -0.39 0.86 16 40 H 0.08 0.92 8.07 -51.93 -0.42 0.50 16 41 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 43 H 0.04 0.75 8.07 -51.93 -0.42 0.33 16 44 H 0.05 0.91 8.04 -51.93 -0.42 0.49 16 45 H 0.02 0.67 7.56 -51.93 -0.39 0.28 16 46 H 0.05 1.41 6.90 -51.93 -0.36 1.06 16 47 H 0.00 -0.11 8.05 -51.93 -0.42 -0.53 16 48 H 0.25 7.29 8.31 -40.82 -0.34 6.96 16 LS Contribution 393.59 15.07 5.93 5.93 Total: -1.00 -36.15 393.59 -8.50 -44.65 By element: Atomic # 1 Polarization: 2.93 SS G_CDS: -7.21 Total: -4.29 kcal Atomic # 6 Polarization: 4.92 SS G_CDS: -1.18 Total: 3.75 kcal Atomic # 7 Polarization: -50.74 SS G_CDS: -0.47 Total: -51.21 kcal Atomic # 8 Polarization: -13.63 SS G_CDS: -0.58 Total: -14.21 kcal Atomic # 9 Polarization: -1.75 SS G_CDS: 0.04 Total: -1.71 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.03 Total: 17.08 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -36.15 -8.50 -44.65 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755038405.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.386 kcal (2) G-P(sol) polarization free energy of solvation -36.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds