Wall clock time and date at job start Tue Mar 31 2020 21:40:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42902 * 114.00328 * 2 1 4 4 C 1.50697 * 109.47389 * 179.97438 * 3 2 1 5 5 C 1.38342 * 119.86724 * 0.28425 * 4 3 2 6 6 C 1.37942 * 120.17275 * 180.27459 * 5 4 3 7 7 C 1.39597 * 119.90549 * 359.71855 * 6 5 4 8 8 C 1.47850 * 120.12931 * 180.02562 * 7 6 5 9 9 O 1.21554 * 119.99503 * 139.50684 * 8 7 6 10 10 N 1.34769 * 120.00634 * 319.50973 * 8 7 6 11 11 C 1.46508 * 120.00005 * 4.67583 * 10 8 7 12 12 C 1.46503 * 120.00469 * 184.68024 * 10 8 7 13 13 C 1.53007 * 109.47148 * 89.99589 * 12 10 8 14 14 C 1.52998 * 109.47031 * 179.97438 * 13 12 10 15 15 N 1.46495 * 109.47087 * 179.97438 * 14 13 12 16 16 C 1.46502 * 119.99648 * 90.00151 * 15 14 13 17 17 C 1.36938 * 120.00391 * 270.00424 * 15 14 13 18 18 H 1.08001 * 119.99945 * 143.31180 * 17 15 14 19 19 C 1.38803 * 120.00041 * 323.31129 * 17 15 14 20 20 N 1.31616 * 120.00386 * 159.01482 * 19 17 15 21 21 Si 1.86802 * 119.99997 * 339.01838 * 19 17 15 22 22 H 1.48498 * 109.47283 * 95.34173 * 21 19 17 23 23 H 1.48498 * 109.47365 * 215.33871 * 21 19 17 24 24 H 1.48500 * 109.47226 * 335.34043 * 21 19 17 25 25 C 1.39531 * 119.73534 * 0.02562 * 7 6 5 26 26 C 1.38209 * 119.82384 * 359.97438 * 25 7 6 27 27 F 1.35099 * 119.95270 * 179.97438 * 26 25 7 28 28 H 1.08998 * 109.47132 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47287 * 299.99847 * 1 2 3 30 30 H 1.09004 * 109.47171 * 59.99960 * 1 2 3 31 31 H 1.09004 * 109.46619 * 59.99823 * 3 2 1 32 32 H 1.09000 * 109.47024 * 300.00568 * 3 2 1 33 33 H 1.07996 * 119.91519 * 359.97438 * 5 4 3 34 34 H 1.08005 * 120.04914 * 179.69333 * 6 5 4 35 35 H 1.08996 * 109.46678 * 87.90243 * 11 10 8 36 36 H 1.08996 * 109.47144 * 207.90501 * 11 10 8 37 37 H 1.09004 * 109.46705 * 327.90479 * 11 10 8 38 38 H 1.08995 * 109.47256 * 209.99730 * 12 10 8 39 39 H 1.08995 * 109.46648 * 330.00048 * 12 10 8 40 40 H 1.08995 * 109.47157 * 300.00202 * 13 12 10 41 41 H 1.09004 * 109.46833 * 60.00475 * 13 12 10 42 42 H 1.08995 * 109.47360 * 300.00133 * 14 13 12 43 43 H 1.09004 * 109.46879 * 60.00558 * 14 13 12 44 44 H 1.08996 * 109.47189 * 85.12215 * 16 15 14 45 45 H 1.09001 * 109.47160 * 205.11670 * 16 15 14 46 46 H 1.08999 * 109.47491 * 325.12099 * 16 15 14 47 47 H 0.96999 * 120.00733 * 179.97438 * 20 19 17 48 48 H 1.08003 * 120.08619 * 180.02562 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5125 1.1864 0.0006 5 6 4.1046 -0.0639 -0.0048 6 6 5.4791 -0.1802 0.0014 7 6 6.2746 0.9669 0.0074 8 6 7.7483 0.8480 0.0135 9 8 8.4213 1.5987 -0.6655 10 7 8.3454 -0.0925 0.7719 11 6 7.5329 -1.0627 1.5101 12 6 9.8070 -0.1448 0.8582 13 6 10.2807 0.7288 2.0216 14 6 11.8070 0.6737 2.1122 15 7 12.2607 1.5105 3.2257 16 6 12.4052 0.9331 4.5643 17 6 12.5496 2.8324 3.0154 18 1 12.3103 3.5645 3.7725 19 6 13.1501 3.2314 1.8293 20 7 13.0603 4.4839 1.4350 21 14 14.0857 1.9908 0.7926 22 1 13.1907 1.4528 -0.2633 23 1 15.2537 2.6547 0.1601 24 1 14.5564 0.8784 1.6565 25 6 5.6734 2.2261 0.0075 26 6 4.2952 2.3297 0.0012 27 9 3.7103 3.5476 0.0018 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.6886 1.8463 0.8900 32 1 1.6886 1.8464 -0.8899 33 1 3.4891 -0.9512 -0.0091 34 1 5.9392 -1.1573 0.0021 35 1 7.3251 -1.9222 0.8728 36 1 8.0752 -1.3907 2.3969 37 1 6.5941 -0.5970 1.8098 38 1 10.1246 -1.1742 1.0239 39 1 10.2392 0.2236 -0.0721 40 1 9.9631 1.7582 1.8559 41 1 9.8484 0.3604 2.9520 42 1 12.1243 -0.3558 2.2781 43 1 12.2397 1.0418 1.1818 44 1 13.3861 0.4665 4.6548 45 1 12.3070 1.7201 5.3121 46 1 11.6302 0.1831 4.7222 47 1 13.4802 4.7629 0.6063 48 1 6.2834 3.1173 0.0117 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755044368.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:40:37 Heat of formation + Delta-G solvation = -59.046090 kcal Electronic energy + Delta-G solvation = -29224.302328 eV Core-core repulsion = 25002.630812 eV Total energy + Delta-G solvation = -4221.671516 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.18533 -40.52896 -39.02709 -37.77693 -36.46188 -35.46056 -32.85683 -31.84428 -31.20956 -30.64609 -28.06102 -27.19497 -26.55641 -26.08490 -25.05767 -23.02412 -22.70413 -21.68623 -20.62450 -19.76220 -17.93307 -17.35103 -16.87081 -16.69396 -16.57081 -16.17913 -16.01566 -15.74159 -15.64239 -15.39368 -15.13802 -14.71140 -14.27156 -13.94019 -13.57327 -13.47852 -13.37263 -13.31642 -13.17858 -13.02982 -12.72194 -12.47373 -12.27545 -12.01209 -11.94952 -11.78902 -11.67921 -11.48931 -11.31710 -11.07008 -10.78145 -10.40989 -10.38277 -10.35622 -9.84538 -9.68839 -9.42260 -9.24886 -8.92734 -8.61009 -8.44625 -6.77476 -5.91415 -3.33353 0.49519 0.88911 2.61470 2.91611 3.12100 3.37798 3.38796 3.51197 3.56200 3.93387 4.18103 4.40406 4.54188 4.59065 4.68934 4.78726 4.80822 4.89602 4.97398 4.99015 5.05626 5.08968 5.19509 5.23464 5.29084 5.44695 5.45235 5.54041 5.69469 5.73019 5.78229 5.86287 5.91356 5.97188 6.04995 6.14167 6.29523 6.36655 6.46679 6.53993 6.60181 6.68916 6.72548 6.82485 7.08703 7.36739 8.11882 8.17886 8.43364 9.04474 9.78158 10.17677 11.24351 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.018520 B = 0.002421 C = 0.002317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.550058 B =11564.882228 C =12083.275425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.386 6.386 3 C 0.104 3.896 4 C -0.109 4.109 5 C -0.077 4.077 6 C -0.105 4.105 7 C -0.093 4.093 8 C 0.553 3.447 9 O -0.517 6.517 10 N -0.607 5.607 11 C 0.071 3.929 12 C 0.113 3.887 13 C -0.147 4.147 14 C 0.142 3.858 15 N -0.613 5.613 16 C 0.127 3.873 17 C -0.271 4.271 18 H 0.078 0.922 19 C 0.034 3.966 20 N -0.900 5.900 21 Si 0.882 3.118 22 H -0.283 1.283 23 H -0.302 1.302 24 H -0.271 1.271 25 C -0.098 4.098 26 C 0.099 3.901 27 F -0.134 7.134 28 H 0.089 0.911 29 H 0.044 0.956 30 H 0.043 0.957 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.148 0.852 34 H 0.143 0.857 35 H 0.058 0.942 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.085 0.915 40 H 0.073 0.927 41 H 0.053 0.947 42 H 0.038 0.962 43 H 0.053 0.947 44 H 0.006 0.994 45 H 0.044 0.956 46 H 0.025 0.975 47 H 0.263 0.737 48 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.291 -14.311 -2.106 29.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.305 6.305 3 C 0.028 3.972 4 C -0.110 4.110 5 C -0.095 4.095 6 C -0.124 4.124 7 C -0.096 4.096 8 C 0.340 3.660 9 O -0.392 6.392 10 N -0.340 5.340 11 C -0.072 4.072 12 C -0.009 4.009 13 C -0.188 4.188 14 C 0.015 3.985 15 N -0.337 5.337 16 C -0.019 4.019 17 C -0.400 4.400 18 H 0.095 0.905 19 C -0.166 4.166 20 N -0.541 5.541 21 Si 0.713 3.287 22 H -0.211 1.211 23 H -0.230 1.230 24 H -0.196 1.196 25 C -0.117 4.117 26 C 0.080 3.920 27 F -0.112 7.112 28 H 0.108 0.892 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.165 0.835 34 H 0.161 0.839 35 H 0.076 0.924 36 H 0.094 0.906 37 H 0.095 0.905 38 H 0.093 0.907 39 H 0.103 0.897 40 H 0.092 0.908 41 H 0.072 0.928 42 H 0.056 0.944 43 H 0.071 0.929 44 H 0.024 0.976 45 H 0.063 0.937 46 H 0.043 0.957 47 H 0.073 0.927 48 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -24.751 -13.897 -2.546 28.499 hybrid contribution 0.174 -0.089 -0.587 0.619 sum -24.577 -13.986 -3.133 28.451 Atomic orbital electron populations 1.22778 0.80255 1.03136 1.00312 1.87818 1.20201 1.26955 1.95560 1.21134 0.89176 0.85344 1.01558 1.19816 0.94829 0.92950 1.03411 1.20810 0.94003 0.96998 0.97664 1.21693 0.93557 0.98527 0.98598 1.19811 0.93698 0.93499 1.02605 1.18232 0.86896 0.80746 0.80114 1.90874 1.65094 1.42160 1.41096 1.47787 1.07656 1.31485 1.47059 1.22131 0.96474 0.91943 0.96657 1.21674 0.77484 1.00422 1.01326 1.22490 0.99338 1.00823 0.96141 1.21062 0.91421 0.93535 0.92457 1.44029 1.76726 1.08581 1.04340 1.21045 0.96725 0.96468 0.87614 1.18775 1.34956 0.81855 1.04369 0.90470 1.25443 0.97786 0.95443 0.97944 1.69847 1.44805 1.16730 1.22754 0.86853 0.79813 0.81982 0.80100 1.21114 1.23042 1.19622 1.21160 0.92554 0.98797 0.99224 1.17167 0.90642 0.79629 1.04563 1.91516 1.84318 1.41488 1.93915 0.89222 0.93762 0.93789 0.91260 0.91297 0.83466 0.83949 0.92372 0.90618 0.90522 0.90723 0.89688 0.90814 0.92789 0.94361 0.92921 0.97620 0.93701 0.95654 0.92701 0.83291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 11.01 101.05 1.11 1.26 16 2 O -0.39 -3.00 9.17 -35.23 -0.32 -3.33 16 3 C 0.10 0.82 5.90 36.00 0.21 1.03 16 4 C -0.11 -1.07 5.89 -104.47 -0.62 -1.68 16 5 C -0.08 -0.68 9.36 -39.65 -0.37 -1.05 16 6 C -0.11 -1.01 7.54 -39.18 -0.30 -1.30 16 7 C -0.09 -1.20 5.19 -104.97 -0.55 -1.75 16 8 C 0.55 8.98 7.34 -12.33 -0.09 8.89 16 9 O -0.52 -10.88 16.49 5.32 0.09 -10.79 16 10 N -0.61 -8.52 2.87 -182.69 -0.52 -9.04 16 11 C 0.07 0.65 8.90 59.85 0.53 1.18 16 12 C 0.11 1.81 5.43 -4.04 -0.02 1.79 16 13 C -0.15 -2.83 5.86 -26.73 -0.16 -2.99 16 14 C 0.14 3.11 4.51 -4.05 -0.02 3.09 16 15 N -0.61 -15.12 2.50 -181.13 -0.45 -15.57 16 16 C 0.13 2.58 10.70 59.85 0.64 3.22 16 17 C -0.27 -7.89 9.92 -15.06 -0.15 -8.04 16 18 H 0.08 2.41 8.06 -52.49 -0.42 1.99 16 19 C 0.03 1.04 5.33 -17.44 -0.09 0.94 16 20 N -0.90 -28.67 13.97 55.49 0.78 -27.90 16 21 Si 0.88 23.21 24.90 -169.99 -4.23 18.98 16 22 H -0.28 -7.27 6.69 56.52 0.38 -6.89 16 23 H -0.30 -8.03 7.11 56.52 0.40 -7.63 16 24 H -0.27 -6.92 7.11 56.52 0.40 -6.52 16 25 C -0.10 -1.29 9.62 -39.11 -0.38 -1.66 16 26 C 0.10 1.15 7.24 -39.48 -0.29 0.86 16 27 F -0.13 -1.58 16.79 2.25 0.04 -1.54 16 28 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.04 0.18 8.14 -51.93 -0.42 -0.25 16 30 H 0.04 0.18 8.14 -51.93 -0.42 -0.25 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.15 1.09 6.99 -52.49 -0.37 0.72 16 34 H 0.14 1.04 5.51 -52.48 -0.29 0.76 16 35 H 0.06 0.39 7.05 -51.93 -0.37 0.02 16 36 H 0.08 0.63 8.06 -51.93 -0.42 0.21 16 37 H 0.08 0.64 5.69 -51.93 -0.30 0.35 16 38 H 0.07 0.95 8.07 -51.93 -0.42 0.53 16 39 H 0.08 1.57 7.36 -51.93 -0.38 1.19 16 40 H 0.07 1.72 8.14 -51.93 -0.42 1.30 16 41 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.04 0.73 8.07 -51.93 -0.42 0.31 16 43 H 0.05 1.30 3.04 -51.93 -0.16 1.14 16 44 H 0.01 0.11 8.14 -51.93 -0.42 -0.31 16 45 H 0.04 0.90 8.00 -51.93 -0.42 0.49 16 46 H 0.02 0.44 8.11 -51.93 -0.42 0.02 16 47 H 0.26 7.96 8.31 -40.82 -0.34 7.62 16 48 H 0.15 2.10 8.06 -52.48 -0.42 1.68 16 LS Contribution 392.84 15.07 5.92 5.92 Total: -1.00 -35.87 392.84 -6.57 -42.45 By element: Atomic # 1 Polarization: 4.37 SS G_CDS: -7.34 Total: -2.97 kcal Atomic # 6 Polarization: 4.31 SS G_CDS: -0.52 Total: 3.79 kcal Atomic # 7 Polarization: -52.31 SS G_CDS: -0.20 Total: -52.51 kcal Atomic # 8 Polarization: -13.88 SS G_CDS: -0.24 Total: -14.12 kcal Atomic # 9 Polarization: -1.58 SS G_CDS: 0.04 Total: -1.54 kcal Atomic # 14 Polarization: 23.21 SS G_CDS: -4.23 Total: 18.98 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -35.87 -6.57 -42.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755044368.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.600 kcal (2) G-P(sol) polarization free energy of solvation -35.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds