Wall clock time and date at job start Tue Mar 31 2020 21:40:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42902 * 114.00328 * 2 1 4 4 C 1.50697 * 109.47389 * 179.97438 * 3 2 1 5 5 C 1.38342 * 119.86724 * 0.28425 * 4 3 2 6 6 C 1.37942 * 120.17275 * 180.27459 * 5 4 3 7 7 C 1.39597 * 119.90549 * 359.71855 * 6 5 4 8 8 C 1.47850 * 120.12931 * 180.02562 * 7 6 5 9 9 O 1.21554 * 119.99503 * 139.50684 * 8 7 6 10 10 N 1.34769 * 120.00634 * 319.50973 * 8 7 6 11 11 C 1.46508 * 120.00005 * 4.67583 * 10 8 7 12 12 C 1.46503 * 120.00469 * 184.68024 * 10 8 7 13 13 C 1.53007 * 109.47148 * 89.99589 * 12 10 8 14 14 C 1.52998 * 109.47031 * 179.97438 * 13 12 10 15 15 N 1.46495 * 109.47087 * 179.97438 * 14 13 12 16 16 C 1.46502 * 119.99648 * 90.00151 * 15 14 13 17 17 C 1.36938 * 120.00391 * 270.00424 * 15 14 13 18 18 H 1.08001 * 119.99945 * 143.31180 * 17 15 14 19 19 C 1.38803 * 120.00041 * 323.31129 * 17 15 14 20 20 N 1.31616 * 120.00386 * 159.01482 * 19 17 15 21 21 Si 1.86802 * 119.99997 * 339.01838 * 19 17 15 22 22 H 1.48498 * 109.47283 * 95.34173 * 21 19 17 23 23 H 1.48498 * 109.47365 * 215.33871 * 21 19 17 24 24 H 1.48500 * 109.47226 * 335.34043 * 21 19 17 25 25 C 1.39531 * 119.73534 * 0.02562 * 7 6 5 26 26 C 1.38209 * 119.82384 * 359.97438 * 25 7 6 27 27 F 1.35099 * 119.95270 * 179.97438 * 26 25 7 28 28 H 1.08998 * 109.47132 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47287 * 299.99847 * 1 2 3 30 30 H 1.09004 * 109.47171 * 59.99960 * 1 2 3 31 31 H 1.09004 * 109.46619 * 59.99823 * 3 2 1 32 32 H 1.09000 * 109.47024 * 300.00568 * 3 2 1 33 33 H 1.07996 * 119.91519 * 359.97438 * 5 4 3 34 34 H 1.08005 * 120.04914 * 179.69333 * 6 5 4 35 35 H 1.08996 * 109.46678 * 87.90243 * 11 10 8 36 36 H 1.08996 * 109.47144 * 207.90501 * 11 10 8 37 37 H 1.09004 * 109.46705 * 327.90479 * 11 10 8 38 38 H 1.08995 * 109.47256 * 209.99730 * 12 10 8 39 39 H 1.08995 * 109.46648 * 330.00048 * 12 10 8 40 40 H 1.08995 * 109.47157 * 300.00202 * 13 12 10 41 41 H 1.09004 * 109.46833 * 60.00475 * 13 12 10 42 42 H 1.08995 * 109.47360 * 300.00133 * 14 13 12 43 43 H 1.09004 * 109.46879 * 60.00558 * 14 13 12 44 44 H 1.08996 * 109.47189 * 85.12215 * 16 15 14 45 45 H 1.09001 * 109.47160 * 205.11670 * 16 15 14 46 46 H 1.08999 * 109.47491 * 325.12099 * 16 15 14 47 47 H 0.96999 * 120.00733 * 179.97438 * 20 19 17 48 48 H 1.08003 * 120.08619 * 180.02562 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5125 1.1864 0.0006 5 6 4.1046 -0.0639 -0.0048 6 6 5.4791 -0.1802 0.0014 7 6 6.2746 0.9669 0.0074 8 6 7.7483 0.8480 0.0135 9 8 8.4213 1.5987 -0.6655 10 7 8.3454 -0.0925 0.7719 11 6 7.5329 -1.0627 1.5101 12 6 9.8070 -0.1448 0.8582 13 6 10.2807 0.7288 2.0216 14 6 11.8070 0.6737 2.1122 15 7 12.2607 1.5105 3.2257 16 6 12.4052 0.9331 4.5643 17 6 12.5496 2.8324 3.0154 18 1 12.3103 3.5645 3.7725 19 6 13.1501 3.2314 1.8293 20 7 13.0603 4.4839 1.4350 21 14 14.0857 1.9908 0.7926 22 1 13.1907 1.4528 -0.2633 23 1 15.2537 2.6547 0.1601 24 1 14.5564 0.8784 1.6565 25 6 5.6734 2.2261 0.0075 26 6 4.2952 2.3297 0.0012 27 9 3.7103 3.5476 0.0018 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.6886 1.8463 0.8900 32 1 1.6886 1.8464 -0.8899 33 1 3.4891 -0.9512 -0.0091 34 1 5.9392 -1.1573 0.0021 35 1 7.3251 -1.9222 0.8728 36 1 8.0752 -1.3907 2.3969 37 1 6.5941 -0.5970 1.8098 38 1 10.1246 -1.1742 1.0239 39 1 10.2392 0.2236 -0.0721 40 1 9.9631 1.7582 1.8559 41 1 9.8484 0.3604 2.9520 42 1 12.1243 -0.3558 2.2781 43 1 12.2397 1.0418 1.1818 44 1 13.3861 0.4665 4.6548 45 1 12.3070 1.7201 5.3121 46 1 11.6302 0.1831 4.7222 47 1 13.4802 4.7629 0.6063 48 1 6.2834 3.1173 0.0117 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755044368.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:40:37 Heat of formation + Delta-G solvation = -83.295619 kcal Electronic energy + Delta-G solvation = -29225.353867 eV Core-core repulsion = 25002.630812 eV Total energy + Delta-G solvation = -4222.723054 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.09978 -41.59396 -39.88469 -38.50036 -38.14039 -36.85743 -34.15965 -33.55567 -32.57978 -31.67784 -28.85020 -28.28709 -27.94966 -27.19657 -26.26164 -24.10803 -23.75493 -22.94560 -22.43511 -20.85880 -19.01244 -18.75692 -18.12069 -17.65666 -17.46215 -17.24263 -17.06162 -17.00354 -16.52844 -16.46018 -16.30835 -15.94243 -15.40695 -15.34106 -15.06296 -14.98383 -14.45732 -14.40477 -14.24320 -13.95694 -13.92614 -13.86333 -13.40883 -13.38913 -13.13261 -12.82442 -12.76416 -12.58643 -12.56311 -12.44080 -12.28652 -12.21539 -12.11516 -11.74642 -11.33859 -11.11037 -10.85676 -10.66639 -10.11944 -9.79951 -9.73191 -8.79838 -8.23420 -5.61567 -0.39575 0.02282 1.27647 1.35383 1.47829 1.48300 1.87477 2.39170 2.44695 2.56331 3.00188 3.07678 3.30356 3.43237 3.63823 3.71437 3.91820 4.00395 4.06323 4.22479 4.28169 4.31872 4.32209 4.38661 4.49091 4.55248 4.59049 4.60858 4.64875 4.68131 4.73641 4.78126 4.83406 4.90015 4.92676 4.95377 5.02176 5.08990 5.12008 5.15176 5.20450 5.35699 5.51545 5.65395 5.90389 6.10630 6.10791 6.25616 6.95878 6.99742 7.61369 8.00506 8.96560 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.018520 B = 0.002421 C = 0.002317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.550058 B =11564.882228 C =12083.275425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.399 6.399 3 C 0.105 3.895 4 C -0.100 4.100 5 C -0.066 4.066 6 C -0.083 4.083 7 C -0.110 4.110 8 C 0.545 3.455 9 O -0.585 6.585 10 N -0.602 5.602 11 C 0.060 3.940 12 C 0.119 3.881 13 C -0.131 4.131 14 C 0.134 3.866 15 N -0.629 5.629 16 C 0.124 3.876 17 C -0.260 4.260 18 H 0.037 0.963 19 C -0.031 4.031 20 N -0.954 5.954 21 Si 0.953 3.047 22 H -0.279 1.279 23 H -0.309 1.309 24 H -0.248 1.248 25 C -0.120 4.120 26 C 0.089 3.911 27 F -0.140 7.140 28 H 0.104 0.896 29 H 0.051 0.949 30 H 0.050 0.950 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.175 0.825 34 H 0.175 0.825 35 H 0.095 0.905 36 H 0.093 0.907 37 H 0.084 0.916 38 H 0.124 0.876 39 H 0.051 0.949 40 H 0.014 0.986 41 H 0.078 0.922 42 H 0.084 0.916 43 H 0.024 0.976 44 H 0.019 0.981 45 H 0.036 0.964 46 H 0.065 0.935 47 H 0.261 0.739 48 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.363 -19.576 -1.407 33.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.318 6.318 3 C 0.028 3.972 4 C -0.102 4.102 5 C -0.084 4.084 6 C -0.102 4.102 7 C -0.113 4.113 8 C 0.334 3.666 9 O -0.465 6.465 10 N -0.333 5.333 11 C -0.081 4.081 12 C -0.004 4.004 13 C -0.172 4.172 14 C 0.009 3.991 15 N -0.354 5.354 16 C -0.020 4.020 17 C -0.390 4.390 18 H 0.054 0.946 19 C -0.227 4.227 20 N -0.598 5.598 21 Si 0.781 3.219 22 H -0.206 1.206 23 H -0.238 1.238 24 H -0.172 1.172 25 C -0.140 4.140 26 C 0.070 3.930 27 F -0.118 7.118 28 H 0.122 0.878 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.096 0.904 32 H 0.094 0.906 33 H 0.192 0.808 34 H 0.192 0.808 35 H 0.113 0.887 36 H 0.111 0.889 37 H 0.102 0.898 38 H 0.142 0.858 39 H 0.070 0.930 40 H 0.033 0.967 41 H 0.097 0.903 42 H 0.102 0.898 43 H 0.042 0.958 44 H 0.038 0.962 45 H 0.055 0.945 46 H 0.083 0.917 47 H 0.070 0.930 48 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -26.862 -19.249 -1.787 33.095 hybrid contribution 0.648 1.530 -0.674 1.793 sum -26.214 -17.719 -2.461 31.737 Atomic orbital electron populations 1.22977 0.78713 1.04352 1.01030 1.87772 1.21831 1.26503 1.95702 1.21141 0.87755 0.85921 1.02347 1.20102 0.96033 0.92513 1.01513 1.21123 0.93791 0.97378 0.96082 1.21952 0.93542 0.98359 0.96300 1.19609 0.91988 0.94561 1.05154 1.18834 0.88195 0.80138 0.79461 1.90832 1.66779 1.44783 1.44152 1.47883 1.07341 1.31614 1.46444 1.22547 0.96255 0.91723 0.97567 1.21531 0.78784 1.01970 0.98161 1.22254 0.97860 0.98330 0.98779 1.21213 0.92714 0.94960 0.90222 1.44216 1.77187 1.07235 1.06718 1.21192 0.98803 0.97035 0.84957 1.18680 1.33497 0.83764 1.03041 0.94558 1.26177 0.99203 0.97362 0.99930 1.70000 1.46820 1.19254 1.23748 0.85711 0.77728 0.79787 0.78643 1.20619 1.23763 1.17173 1.21052 0.93400 0.98405 1.01169 1.17188 0.90075 0.80190 1.05562 1.91493 1.84217 1.42048 1.94086 0.87803 0.93035 0.93131 0.90389 0.90552 0.80777 0.80825 0.88680 0.88875 0.89764 0.85767 0.93036 0.96672 0.90316 0.89804 0.95848 0.96243 0.94542 0.91687 0.93019 0.86173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 11.01 113.37 1.25 1.41 16 2 O -0.40 -4.89 9.17 -148.98 -1.37 -6.25 16 3 C 0.10 1.40 5.90 71.23 0.42 1.82 16 4 C -0.10 -1.78 5.89 -19.77 -0.12 -1.89 16 5 C -0.07 -0.95 9.36 22.22 0.21 -0.74 16 6 C -0.08 -1.35 7.54 22.53 0.17 -1.18 16 7 C -0.11 -2.85 5.19 -20.09 -0.10 -2.95 16 8 C 0.54 18.20 7.34 86.79 0.64 18.83 16 9 O -0.58 -26.66 16.49 -3.89 -0.06 -26.73 16 10 N -0.60 -15.90 2.87 -850.17 -2.44 -18.34 16 11 C 0.06 0.82 8.90 127.77 1.14 1.95 16 12 C 0.12 3.58 5.43 86.38 0.47 4.05 16 13 C -0.13 -4.95 5.86 30.60 0.18 -4.77 16 14 C 0.13 5.64 4.51 86.38 0.39 6.03 16 15 N -0.63 -30.47 2.50 -726.96 -1.82 -32.29 16 16 C 0.12 4.73 10.70 127.77 1.37 6.10 16 17 C -0.26 -15.65 9.92 84.03 0.83 -14.82 16 18 H 0.04 2.43 8.06 -2.91 -0.02 2.40 16 19 C -0.03 -1.93 5.33 84.86 0.45 -1.48 16 20 N -0.95 -64.19 13.97 21.65 0.30 -63.89 16 21 Si 0.95 49.28 24.90 68.60 1.71 50.99 16 22 H -0.28 -14.05 6.69 99.48 0.67 -13.39 16 23 H -0.31 -16.11 7.11 99.48 0.71 -15.40 16 24 H -0.25 -11.75 7.11 99.48 0.71 -11.05 16 25 C -0.12 -3.40 9.62 22.57 0.22 -3.18 16 26 C 0.09 2.09 7.24 22.34 0.16 2.25 16 27 F -0.14 -3.42 16.79 44.97 0.75 -2.66 16 28 H 0.10 0.39 8.14 -2.39 -0.02 0.37 16 29 H 0.05 0.27 8.14 -2.39 -0.02 0.25 16 30 H 0.05 0.27 8.14 -2.39 -0.02 0.25 16 31 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.17 1.69 6.99 -2.91 -0.02 1.67 16 34 H 0.17 1.66 5.51 -2.91 -0.02 1.65 16 35 H 0.09 0.68 7.05 -2.39 -0.02 0.66 16 36 H 0.09 1.02 8.06 -2.39 -0.02 1.00 16 37 H 0.08 1.07 5.69 -2.38 -0.01 1.06 16 38 H 0.12 2.55 8.07 -2.39 -0.02 2.53 16 39 H 0.05 1.92 7.36 -2.39 -0.02 1.90 16 40 H 0.01 0.72 8.14 -2.39 -0.02 0.70 16 41 H 0.08 2.53 8.14 -2.38 -0.02 2.51 16 42 H 0.08 2.79 8.07 -2.39 -0.02 2.77 16 43 H 0.02 1.14 3.04 -2.38 -0.01 1.13 16 44 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 45 H 0.04 1.42 8.00 -2.39 -0.02 1.40 16 46 H 0.06 1.96 8.11 -2.39 -0.02 1.94 16 47 H 0.26 16.72 8.31 -92.71 -0.77 15.95 16 48 H 0.12 3.96 8.06 -2.91 -0.02 3.93 16 Total: -1.00 -86.66 392.84 5.66 -81.00 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: 0.92 Total: 6.74 kcal Atomic # 6 Polarization: 3.76 SS G_CDS: 7.67 Total: 11.42 kcal Atomic # 7 Polarization: -110.56 SS G_CDS: -3.96 Total: -114.52 kcal Atomic # 8 Polarization: -31.55 SS G_CDS: -1.43 Total: -32.98 kcal Atomic # 9 Polarization: -3.42 SS G_CDS: 0.75 Total: -2.66 kcal Atomic # 14 Polarization: 49.28 SS G_CDS: 1.71 Total: 50.99 kcal Total: -86.66 5.66 -81.00 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755044368.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.295 kcal (2) G-P(sol) polarization free energy of solvation -86.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds