Wall clock time and date at job start Tue Mar 31 2020 21:15:18
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.09001 * 109.47278 * 2 1
4 4 C 1.52999 * 109.47011 * 120.00614 * 2 1 3
5 5 N 1.46502 * 109.47307 * 175.00188 * 4 2 1
6 6 C 1.34774 * 120.00289 * 180.02562 * 5 4 2
7 7 O 1.21281 * 119.99666 * 359.97438 * 6 5 4
8 8 C 1.50694 * 120.00305 * 179.97438 * 6 5 4
9 9 C 1.52997 * 109.47321 * 179.97438 * 8 6 5
10 10 C 1.52998 * 109.47266 * 179.97438 * 9 8 6
11 11 O 1.42897 * 109.47344 * 179.97438 * 10 9 8
12 12 C 1.35955 * 117.00101 * 180.02562 * 11 10 9
13 13 C 1.38658 * 120.06313 * 359.97438 * 12 11 10
14 14 C 1.38185 * 119.97047 * 180.02562 * 13 12 11
15 15 C 1.38266 * 120.09617 * 359.97438 * 14 13 12
16 16 C 1.38259 * 120.11989 * 0.02562 * 15 14 13
17 17 C 1.38323 * 120.03494 * 359.97438 * 16 15 14
18 18 F 1.35099 * 120.05003 * 180.02562 * 17 16 15
19 19 N 1.46511 * 109.47059 * 240.00075 * 2 1 3
20 20 C 1.46494 * 119.99830 * 300.00431 * 19 2 1
21 21 C 1.36932 * 119.99633 * 120.00127 * 19 2 1
22 22 H 1.08000 * 120.00134 * 23.10115 * 21 19 2
23 23 C 1.38816 * 119.99855 * 203.09688 * 21 19 2
24 24 N 1.31621 * 119.99741 * 13.00688 * 23 21 19
25 25 Si 1.86792 * 120.00144 * 193.00488 * 23 21 19
26 26 H 1.48500 * 109.47477 * 0.02562 * 25 23 21
27 27 H 1.48500 * 109.47440 * 120.00264 * 25 23 21
28 28 H 1.48500 * 109.47190 * 240.00332 * 25 23 21
29 29 H 1.08999 * 109.47396 * 179.97438 * 1 2 3
30 30 H 1.08991 * 109.46987 * 299.99916 * 1 2 3
31 31 H 1.09006 * 109.46786 * 59.99556 * 1 2 3
32 32 H 1.08998 * 109.47566 * 54.99321 * 4 2 1
33 33 H 1.09008 * 109.46884 * 294.99843 * 4 2 1
34 34 H 0.96999 * 119.99582 * 359.97438 * 5 4 2
35 35 H 1.08998 * 109.47460 * 59.98984 * 8 6 5
36 36 H 1.09008 * 109.46907 * 299.99556 * 8 6 5
37 37 H 1.09004 * 109.46723 * 59.99821 * 9 8 6
38 38 H 1.08991 * 109.47214 * 299.99648 * 9 8 6
39 39 H 1.09007 * 109.46777 * 60.00017 * 10 9 8
40 40 H 1.09000 * 109.47534 * 300.00751 * 10 9 8
41 41 H 1.08003 * 120.01980 * 0.04106 * 13 12 11
42 42 H 1.07997 * 119.95535 * 180.27236 * 14 13 12
43 43 H 1.07991 * 119.93813 * 179.97438 * 15 14 13
44 44 H 1.07999 * 119.97712 * 180.02562 * 16 15 14
45 45 H 1.08996 * 109.47572 * 95.12807 * 20 19 2
46 46 H 1.09004 * 109.46640 * 215.12546 * 20 19 2
47 47 H 1.09005 * 109.47325 * 335.12325 * 20 19 2
48 48 H 0.96998 * 120.00065 * 180.02562 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 6 2.0400 -0.7214 1.2492
5 7 3.5000 -0.8265 1.1906
6 6 4.1730 -1.4294 2.1906
7 8 3.5698 -1.8845 3.1393
8 6 5.6748 -1.5380 2.1301
9 6 6.1847 -2.2593 3.3793
10 6 7.7094 -2.3702 3.3175
11 8 8.1858 -3.0433 4.4845
12 6 9.5293 -3.2249 4.5871
13 6 10.3708 -2.7654 3.5855
14 6 11.7360 -2.9515 3.6916
15 6 12.2644 -3.5949 4.7955
16 6 11.4288 -4.0546 5.7965
17 6 10.0615 -3.8712 5.6956
18 9 9.2447 -4.3198 6.6738
19 7 2.0183 -0.6906 -1.1963
20 6 1.6643 -2.0931 -1.4281
21 6 2.8056 -0.0251 -2.0976
22 1 3.3701 0.8411 -1.7853
23 6 2.8782 -0.4638 -3.4126
24 7 2.0108 -1.3465 -3.8606
25 14 4.2067 0.1987 -4.5462
26 1 5.0497 1.1714 -3.8056
27 1 5.0525 -0.9234 -5.0265
28 1 3.5746 0.8745 -5.7077
29 1 -0.3634 -1.0276 -0.0005
30 1 -0.3633 0.5138 0.8899
31 1 -0.3633 0.5139 -0.8900
32 1 1.6053 -1.7199 1.2951
33 1 1.7516 -0.1585 2.1370
34 1 3.9823 -0.4628 0.4316
35 1 6.1098 -0.5397 2.0843
36 1 5.9628 -2.1009 1.2421
37 1 5.7497 -3.2577 3.4253
38 1 5.8968 -1.6962 4.2669
39 1 8.1447 -1.3718 3.2711
40 1 7.9972 -2.9334 2.4297
41 1 9.9597 -2.2620 2.7230
42 1 12.3916 -2.5896 2.9134
43 1 13.3316 -3.7393 4.8755
44 1 11.8440 -4.5565 6.6579
45 1 0.7890 -2.1447 -2.0756
46 1 2.5001 -2.6046 -1.9056
47 1 1.4406 -2.5737 -0.4756
48 1 2.0616 -1.6534 -4.7794
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001755329383.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:15:18
Heat of formation + Delta-G solvation = -101.200120 kcal
Electronic energy + Delta-G solvation = -28406.701223 eV
Core-core repulsion = 24183.201771 eV
Total energy + Delta-G solvation = -4223.499452 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 338.179 amu
Computer time = 0.86 seconds
Orbital eigenvalues (eV)
-49.84000 -41.08235 -40.65865 -38.59277 -38.35204 -35.40514 -34.84578 -33.67294
-31.66088 -31.22698 -30.84993 -28.74273 -28.00650 -26.63558 -24.94603 -24.18701
-23.41497 -22.39029 -21.24610 -20.79185 -19.43054 -18.84616 -18.28900 -17.77933
-17.59447 -17.43385 -17.15420 -16.87937 -16.65906 -16.14717 -15.91372 -15.75316
-15.41808 -15.17766 -14.81075 -14.70439 -14.46608 -14.33239 -13.86769 -13.76248
-13.56489 -13.25857 -13.16193 -13.03802 -12.83533 -12.78647 -12.66345 -12.51137
-12.41365 -12.32826 -12.25263 -12.04400 -11.94112 -11.76606 -11.62531 -11.48974
-10.86294 -10.61125 -9.94090 -9.91228 -9.22392 -8.76029 -7.76714 -5.25816
0.13081 0.27367 1.51236 1.53713 1.62631 1.72839 1.92575 2.49810
2.56227 2.61545 3.25005 3.38437 3.63329 3.68885 3.80514 3.88959
3.91304 4.04918 4.07545 4.20025 4.31579 4.33336 4.39023 4.39802
4.42705 4.59371 4.61417 4.66123 4.74766 4.77337 4.95322 4.99239
5.02978 5.04362 5.10701 5.18897 5.23620 5.26909 5.36947 5.42855
5.43996 5.63374 5.71673 5.72859 5.75359 6.30867 6.37251 6.71708
7.19003 7.35826 7.90440 8.37192 9.26847
Molecular weight = 338.18amu
Principal moments of inertia in cm(-1)
A = 0.013550 B = 0.002067 C = 0.001844
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2065.956429 B =13541.193797 C =15180.675991
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.150 4.150
2 C 0.157 3.843
3 H 0.077 0.923
4 C 0.116 3.884
5 N -0.706 5.706
6 C 0.504 3.496
7 O -0.596 6.596
8 C -0.127 4.127
9 C -0.096 4.096
10 C 0.060 3.940
11 O -0.336 6.336
12 C 0.077 3.923
13 C -0.187 4.187
14 C -0.085 4.085
15 C -0.128 4.128
16 C -0.118 4.118
17 C 0.026 3.974
18 F -0.154 7.154
19 N -0.602 5.602
20 C 0.185 3.815
21 C -0.253 4.253
22 H 0.084 0.916
23 C -0.055 4.055
24 N -0.941 5.941
25 Si 0.966 3.034
26 H -0.256 1.256
27 H -0.297 1.297
28 H -0.303 1.303
29 H 0.041 0.959
30 H 0.075 0.925
31 H 0.041 0.959
32 H 0.042 0.958
33 H 0.070 0.930
34 H 0.413 0.587
35 H 0.127 0.873
36 H 0.115 0.885
37 H 0.057 0.943
38 H 0.065 0.935
39 H 0.089 0.911
40 H 0.083 0.917
41 H 0.157 0.843
42 H 0.164 0.836
43 H 0.166 0.834
44 H 0.158 0.842
45 H 0.000 1.000
46 H 0.013 0.987
47 H 0.017 0.983
48 H 0.244 0.756
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 20.516 -0.143 14.752 25.270
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.209 4.209
2 C 0.050 3.950
3 H 0.095 0.905
4 C -0.010 4.010
5 N -0.357 5.357
6 C 0.292 3.708
7 O -0.478 6.478
8 C -0.166 4.166
9 C -0.134 4.134
10 C -0.014 4.014
11 O -0.250 6.250
12 C 0.031 3.969
13 C -0.206 4.206
14 C -0.103 4.103
15 C -0.145 4.145
16 C -0.137 4.137
17 C 0.006 3.994
18 F -0.133 7.133
19 N -0.325 5.325
20 C 0.040 3.960
21 C -0.383 4.383
22 H 0.102 0.898
23 C -0.250 4.250
24 N -0.588 5.588
25 Si 0.795 3.205
26 H -0.180 1.180
27 H -0.225 1.225
28 H -0.231 1.231
29 H 0.060 0.940
30 H 0.094 0.906
31 H 0.060 0.940
32 H 0.061 0.939
33 H 0.088 0.912
34 H 0.249 0.751
35 H 0.145 0.855
36 H 0.133 0.867
37 H 0.076 0.924
38 H 0.084 0.916
39 H 0.107 0.893
40 H 0.101 0.899
41 H 0.175 0.825
42 H 0.181 0.819
43 H 0.183 0.817
44 H 0.175 0.825
45 H 0.018 0.982
46 H 0.032 0.968
47 H 0.035 0.965
48 H 0.053 0.947
Dipole moment (debyes) X Y Z Total
from point charges 19.874 -0.577 15.420 25.161
hybrid contribution -0.178 -0.018 -1.254 1.267
sum 19.696 -0.596 14.166 24.268
Atomic orbital electron populations
1.22087 0.96439 1.01112 1.01311 1.20782 0.93381 0.95622 0.85229
0.90511 1.21725 0.80486 1.00119 0.98666 1.45932 1.07945 1.58449
1.23331 1.21165 0.91377 0.76733 0.81520 1.90662 1.71726 1.50093
1.35349 1.21496 0.90002 1.05042 1.00109 1.21094 0.92738 1.01470
0.98112 1.23004 0.94343 0.97840 0.86192 1.86091 1.19129 1.74809
1.44987 1.19359 0.83748 0.98460 0.95318 1.21537 0.94823 1.04831
0.99397 1.21505 0.94058 0.96171 0.98531 1.21380 1.01474 0.98666
0.93030 1.21345 0.89400 1.00929 1.01990 1.17581 0.89363 1.05168
0.87256 1.91444 1.73106 1.87753 1.60996 1.44134 1.58363 1.07791
1.22191 1.20359 0.97395 0.84221 0.94066 1.19633 1.18198 1.11162
0.89281 0.89836 1.25804 1.00447 1.00406 0.98371 1.70259 1.37077
1.36215 1.15227 0.85218 0.79058 0.77464 0.78751 1.18004 1.22455
1.23090 0.93990 0.90616 0.94010 0.93947 0.91183 0.75053 0.85509
0.86700 0.92373 0.91624 0.89256 0.89868 0.82520 0.81889 0.81659
0.82454 0.98152 0.96774 0.96456 0.94664
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -5.04 9.19 71.98 0.66 -4.38 16
2 C 0.16 5.64 2.87 44.99 0.13 5.77 16
3 H 0.08 2.65 7.86 -2.39 -0.02 2.63 16
4 C 0.12 3.86 4.93 86.38 0.43 4.29 16
5 N -0.71 -21.91 5.39 -463.06 -2.49 -24.41 16
6 C 0.50 15.33 7.83 87.66 0.69 16.02 16
7 O -0.60 -22.95 15.98 -3.03 -0.05 -23.00 16
8 C -0.13 -2.58 5.70 29.85 0.17 -2.41 16
9 C -0.10 -2.15 4.87 30.59 0.15 -2.00 16
10 C 0.06 1.06 4.74 71.98 0.34 1.40 16
11 O -0.34 -8.26 10.00 -93.04 -0.93 -9.19 16
12 C 0.08 1.65 6.69 22.53 0.15 1.80 16
13 C -0.19 -2.70 9.04 22.36 0.20 -2.50 16
14 C -0.08 -0.86 10.04 22.26 0.22 -0.63 16
15 C -0.13 -1.26 10.04 22.28 0.22 -1.04 16
16 C -0.12 -1.73 10.02 22.29 0.22 -1.50 16
17 C 0.03 0.57 7.31 22.45 0.16 0.74 16
18 F -0.15 -4.16 17.11 44.97 0.77 -3.39 16
19 N -0.60 -26.82 2.28 -702.77 -1.61 -28.43 16
20 C 0.18 8.80 8.00 127.77 1.02 9.82 16
21 C -0.25 -12.21 9.31 84.04 0.78 -11.42 16
22 H 0.08 3.74 7.82 -2.91 -0.02 3.72 16
23 C -0.06 -2.87 5.10 84.86 0.43 -2.44 16
24 N -0.94 -53.44 10.72 21.65 0.23 -53.21 16
25 Si 0.97 41.69 29.57 68.60 2.03 43.72 16
26 H -0.26 -10.01 7.11 99.48 0.71 -9.31 16
27 H -0.30 -13.06 7.11 99.48 0.71 -12.36 16
28 H -0.30 -13.59 7.11 99.48 0.71 -12.89 16
29 H 0.04 1.46 7.67 -2.39 -0.02 1.44 16
30 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16
31 H 0.04 1.54 8.14 -2.38 -0.02 1.52 16
32 H 0.04 1.57 6.86 -2.39 -0.02 1.55 16
33 H 0.07 2.16 8.14 -2.38 -0.02 2.14 16
34 H 0.41 12.45 7.89 -92.71 -0.73 11.72 16
35 H 0.13 1.80 8.14 -2.39 -0.02 1.78 16
36 H 0.11 2.00 8.14 -2.38 -0.02 1.98 16
37 H 0.06 1.56 8.10 -2.38 -0.02 1.55 16
38 H 0.06 1.66 8.10 -2.39 -0.02 1.64 16
39 H 0.09 1.13 7.66 -2.38 -0.02 1.11 16
40 H 0.08 1.17 7.66 -2.39 -0.02 1.16 16
41 H 0.16 1.57 6.30 -2.91 -0.02 1.56 16
42 H 0.16 0.63 8.06 -2.91 -0.02 0.61 16
43 H 0.17 0.55 8.06 -2.92 -0.02 0.53 16
44 H 0.16 1.60 8.06 -2.91 -0.02 1.58 16
45 H 0.00 0.01 7.34 -2.39 -0.02 -0.01 16
46 H 0.01 0.71 7.35 -2.38 -0.02 0.69 16
47 H 0.02 0.74 6.53 -2.38 -0.02 0.72 16
48 H 0.24 13.66 8.31 -92.71 -0.77 12.89 16
Total: -1.00 -70.58 398.43 4.17 -66.41
By element:
Atomic # 1 Polarization: 19.74 SS G_CDS: 0.23 Total: 19.97 kcal
Atomic # 6 Polarization: 5.53 SS G_CDS: 5.99 Total: 11.52 kcal
Atomic # 7 Polarization: -102.17 SS G_CDS: -3.87 Total: -106.04 kcal
Atomic # 8 Polarization: -31.21 SS G_CDS: -0.98 Total: -32.19 kcal
Atomic # 9 Polarization: -4.16 SS G_CDS: 0.77 Total: -3.39 kcal
Atomic # 14 Polarization: 41.69 SS G_CDS: 2.03 Total: 43.72 kcal
Total: -70.58 4.17 -66.41 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001755329383.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -34.792 kcal
(2) G-P(sol) polarization free energy of solvation -70.580 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.371 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.171 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.409 kcal
(6) G-S(sol) free energy of system = (1) + (5) -101.200 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.87 seconds