Wall clock time and date at job start Tue Mar 31 2020 21:15:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47278 * 2 1 4 4 C 1.52999 * 109.47011 * 120.00614 * 2 1 3 5 5 N 1.46502 * 109.47307 * 175.00188 * 4 2 1 6 6 C 1.34774 * 120.00289 * 180.02562 * 5 4 2 7 7 O 1.21281 * 119.99666 * 359.97438 * 6 5 4 8 8 C 1.50694 * 120.00305 * 179.97438 * 6 5 4 9 9 C 1.52997 * 109.47321 * 179.97438 * 8 6 5 10 10 C 1.52998 * 109.47266 * 179.97438 * 9 8 6 11 11 O 1.42897 * 109.47344 * 179.97438 * 10 9 8 12 12 C 1.35955 * 117.00101 * 180.02562 * 11 10 9 13 13 C 1.38658 * 120.06313 * 359.97438 * 12 11 10 14 14 C 1.38185 * 119.97047 * 180.02562 * 13 12 11 15 15 C 1.38266 * 120.09617 * 359.97438 * 14 13 12 16 16 C 1.38259 * 120.11989 * 0.02562 * 15 14 13 17 17 C 1.38323 * 120.03494 * 359.97438 * 16 15 14 18 18 F 1.35099 * 120.05003 * 180.02562 * 17 16 15 19 19 N 1.46511 * 109.47059 * 240.00075 * 2 1 3 20 20 C 1.46494 * 119.99830 * 300.00431 * 19 2 1 21 21 C 1.36932 * 119.99633 * 120.00127 * 19 2 1 22 22 H 1.08000 * 120.00134 * 23.10115 * 21 19 2 23 23 C 1.38816 * 119.99855 * 203.09688 * 21 19 2 24 24 N 1.31621 * 119.99741 * 13.00688 * 23 21 19 25 25 Si 1.86792 * 120.00144 * 193.00488 * 23 21 19 26 26 H 1.48500 * 109.47477 * 0.02562 * 25 23 21 27 27 H 1.48500 * 109.47440 * 120.00264 * 25 23 21 28 28 H 1.48500 * 109.47190 * 240.00332 * 25 23 21 29 29 H 1.08999 * 109.47396 * 179.97438 * 1 2 3 30 30 H 1.08991 * 109.46987 * 299.99916 * 1 2 3 31 31 H 1.09006 * 109.46786 * 59.99556 * 1 2 3 32 32 H 1.08998 * 109.47566 * 54.99321 * 4 2 1 33 33 H 1.09008 * 109.46884 * 294.99843 * 4 2 1 34 34 H 0.96999 * 119.99582 * 359.97438 * 5 4 2 35 35 H 1.08998 * 109.47460 * 59.98984 * 8 6 5 36 36 H 1.09008 * 109.46907 * 299.99556 * 8 6 5 37 37 H 1.09004 * 109.46723 * 59.99821 * 9 8 6 38 38 H 1.08991 * 109.47214 * 299.99648 * 9 8 6 39 39 H 1.09007 * 109.46777 * 60.00017 * 10 9 8 40 40 H 1.09000 * 109.47534 * 300.00751 * 10 9 8 41 41 H 1.08003 * 120.01980 * 0.04106 * 13 12 11 42 42 H 1.07997 * 119.95535 * 180.27236 * 14 13 12 43 43 H 1.07991 * 119.93813 * 179.97438 * 15 14 13 44 44 H 1.07999 * 119.97712 * 180.02562 * 16 15 14 45 45 H 1.08996 * 109.47572 * 95.12807 * 20 19 2 46 46 H 1.09004 * 109.46640 * 215.12546 * 20 19 2 47 47 H 1.09005 * 109.47325 * 335.12325 * 20 19 2 48 48 H 0.96998 * 120.00065 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7214 1.2492 5 7 3.5000 -0.8265 1.1906 6 6 4.1730 -1.4294 2.1906 7 8 3.5698 -1.8845 3.1393 8 6 5.6748 -1.5380 2.1301 9 6 6.1847 -2.2593 3.3793 10 6 7.7094 -2.3702 3.3175 11 8 8.1858 -3.0433 4.4845 12 6 9.5293 -3.2249 4.5871 13 6 10.3708 -2.7654 3.5855 14 6 11.7360 -2.9515 3.6916 15 6 12.2644 -3.5949 4.7955 16 6 11.4288 -4.0546 5.7965 17 6 10.0615 -3.8712 5.6956 18 9 9.2447 -4.3198 6.6738 19 7 2.0183 -0.6906 -1.1963 20 6 1.6643 -2.0931 -1.4281 21 6 2.8056 -0.0251 -2.0976 22 1 3.3701 0.8411 -1.7853 23 6 2.8782 -0.4638 -3.4126 24 7 2.0108 -1.3465 -3.8606 25 14 4.2067 0.1987 -4.5462 26 1 5.0497 1.1714 -3.8056 27 1 5.0525 -0.9234 -5.0265 28 1 3.5746 0.8745 -5.7077 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.6053 -1.7199 1.2951 33 1 1.7516 -0.1585 2.1370 34 1 3.9823 -0.4628 0.4316 35 1 6.1098 -0.5397 2.0843 36 1 5.9628 -2.1009 1.2421 37 1 5.7497 -3.2577 3.4253 38 1 5.8968 -1.6962 4.2669 39 1 8.1447 -1.3718 3.2711 40 1 7.9972 -2.9334 2.4297 41 1 9.9597 -2.2620 2.7230 42 1 12.3916 -2.5896 2.9134 43 1 13.3316 -3.7393 4.8755 44 1 11.8440 -4.5565 6.6579 45 1 0.7890 -2.1447 -2.0756 46 1 2.5001 -2.6046 -1.9056 47 1 1.4406 -2.5737 -0.4756 48 1 2.0616 -1.6534 -4.7794 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755329383.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:18 Heat of formation + Delta-G solvation = -101.200120 kcal Electronic energy + Delta-G solvation = -28406.701223 eV Core-core repulsion = 24183.201771 eV Total energy + Delta-G solvation = -4223.499452 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.84000 -41.08235 -40.65865 -38.59277 -38.35204 -35.40514 -34.84578 -33.67294 -31.66088 -31.22698 -30.84993 -28.74273 -28.00650 -26.63558 -24.94603 -24.18701 -23.41497 -22.39029 -21.24610 -20.79185 -19.43054 -18.84616 -18.28900 -17.77933 -17.59447 -17.43385 -17.15420 -16.87937 -16.65906 -16.14717 -15.91372 -15.75316 -15.41808 -15.17766 -14.81075 -14.70439 -14.46608 -14.33239 -13.86769 -13.76248 -13.56489 -13.25857 -13.16193 -13.03802 -12.83533 -12.78647 -12.66345 -12.51137 -12.41365 -12.32826 -12.25263 -12.04400 -11.94112 -11.76606 -11.62531 -11.48974 -10.86294 -10.61125 -9.94090 -9.91228 -9.22392 -8.76029 -7.76714 -5.25816 0.13081 0.27367 1.51236 1.53713 1.62631 1.72839 1.92575 2.49810 2.56227 2.61545 3.25005 3.38437 3.63329 3.68885 3.80514 3.88959 3.91304 4.04918 4.07545 4.20025 4.31579 4.33336 4.39023 4.39802 4.42705 4.59371 4.61417 4.66123 4.74766 4.77337 4.95322 4.99239 5.02978 5.04362 5.10701 5.18897 5.23620 5.26909 5.36947 5.42855 5.43996 5.63374 5.71673 5.72859 5.75359 6.30867 6.37251 6.71708 7.19003 7.35826 7.90440 8.37192 9.26847 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.013550 B = 0.002067 C = 0.001844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2065.956429 B =13541.193797 C =15180.675991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.157 3.843 3 H 0.077 0.923 4 C 0.116 3.884 5 N -0.706 5.706 6 C 0.504 3.496 7 O -0.596 6.596 8 C -0.127 4.127 9 C -0.096 4.096 10 C 0.060 3.940 11 O -0.336 6.336 12 C 0.077 3.923 13 C -0.187 4.187 14 C -0.085 4.085 15 C -0.128 4.128 16 C -0.118 4.118 17 C 0.026 3.974 18 F -0.154 7.154 19 N -0.602 5.602 20 C 0.185 3.815 21 C -0.253 4.253 22 H 0.084 0.916 23 C -0.055 4.055 24 N -0.941 5.941 25 Si 0.966 3.034 26 H -0.256 1.256 27 H -0.297 1.297 28 H -0.303 1.303 29 H 0.041 0.959 30 H 0.075 0.925 31 H 0.041 0.959 32 H 0.042 0.958 33 H 0.070 0.930 34 H 0.413 0.587 35 H 0.127 0.873 36 H 0.115 0.885 37 H 0.057 0.943 38 H 0.065 0.935 39 H 0.089 0.911 40 H 0.083 0.917 41 H 0.157 0.843 42 H 0.164 0.836 43 H 0.166 0.834 44 H 0.158 0.842 45 H 0.000 1.000 46 H 0.013 0.987 47 H 0.017 0.983 48 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.516 -0.143 14.752 25.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.050 3.950 3 H 0.095 0.905 4 C -0.010 4.010 5 N -0.357 5.357 6 C 0.292 3.708 7 O -0.478 6.478 8 C -0.166 4.166 9 C -0.134 4.134 10 C -0.014 4.014 11 O -0.250 6.250 12 C 0.031 3.969 13 C -0.206 4.206 14 C -0.103 4.103 15 C -0.145 4.145 16 C -0.137 4.137 17 C 0.006 3.994 18 F -0.133 7.133 19 N -0.325 5.325 20 C 0.040 3.960 21 C -0.383 4.383 22 H 0.102 0.898 23 C -0.250 4.250 24 N -0.588 5.588 25 Si 0.795 3.205 26 H -0.180 1.180 27 H -0.225 1.225 28 H -0.231 1.231 29 H 0.060 0.940 30 H 0.094 0.906 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.088 0.912 34 H 0.249 0.751 35 H 0.145 0.855 36 H 0.133 0.867 37 H 0.076 0.924 38 H 0.084 0.916 39 H 0.107 0.893 40 H 0.101 0.899 41 H 0.175 0.825 42 H 0.181 0.819 43 H 0.183 0.817 44 H 0.175 0.825 45 H 0.018 0.982 46 H 0.032 0.968 47 H 0.035 0.965 48 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 19.874 -0.577 15.420 25.161 hybrid contribution -0.178 -0.018 -1.254 1.267 sum 19.696 -0.596 14.166 24.268 Atomic orbital electron populations 1.22087 0.96439 1.01112 1.01311 1.20782 0.93381 0.95622 0.85229 0.90511 1.21725 0.80486 1.00119 0.98666 1.45932 1.07945 1.58449 1.23331 1.21165 0.91377 0.76733 0.81520 1.90662 1.71726 1.50093 1.35349 1.21496 0.90002 1.05042 1.00109 1.21094 0.92738 1.01470 0.98112 1.23004 0.94343 0.97840 0.86192 1.86091 1.19129 1.74809 1.44987 1.19359 0.83748 0.98460 0.95318 1.21537 0.94823 1.04831 0.99397 1.21505 0.94058 0.96171 0.98531 1.21380 1.01474 0.98666 0.93030 1.21345 0.89400 1.00929 1.01990 1.17581 0.89363 1.05168 0.87256 1.91444 1.73106 1.87753 1.60996 1.44134 1.58363 1.07791 1.22191 1.20359 0.97395 0.84221 0.94066 1.19633 1.18198 1.11162 0.89281 0.89836 1.25804 1.00447 1.00406 0.98371 1.70259 1.37077 1.36215 1.15227 0.85218 0.79058 0.77464 0.78751 1.18004 1.22455 1.23090 0.93990 0.90616 0.94010 0.93947 0.91183 0.75053 0.85509 0.86700 0.92373 0.91624 0.89256 0.89868 0.82520 0.81889 0.81659 0.82454 0.98152 0.96774 0.96456 0.94664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.04 9.19 71.98 0.66 -4.38 16 2 C 0.16 5.64 2.87 44.99 0.13 5.77 16 3 H 0.08 2.65 7.86 -2.39 -0.02 2.63 16 4 C 0.12 3.86 4.93 86.38 0.43 4.29 16 5 N -0.71 -21.91 5.39 -463.06 -2.49 -24.41 16 6 C 0.50 15.33 7.83 87.66 0.69 16.02 16 7 O -0.60 -22.95 15.98 -3.03 -0.05 -23.00 16 8 C -0.13 -2.58 5.70 29.85 0.17 -2.41 16 9 C -0.10 -2.15 4.87 30.59 0.15 -2.00 16 10 C 0.06 1.06 4.74 71.98 0.34 1.40 16 11 O -0.34 -8.26 10.00 -93.04 -0.93 -9.19 16 12 C 0.08 1.65 6.69 22.53 0.15 1.80 16 13 C -0.19 -2.70 9.04 22.36 0.20 -2.50 16 14 C -0.08 -0.86 10.04 22.26 0.22 -0.63 16 15 C -0.13 -1.26 10.04 22.28 0.22 -1.04 16 16 C -0.12 -1.73 10.02 22.29 0.22 -1.50 16 17 C 0.03 0.57 7.31 22.45 0.16 0.74 16 18 F -0.15 -4.16 17.11 44.97 0.77 -3.39 16 19 N -0.60 -26.82 2.28 -702.77 -1.61 -28.43 16 20 C 0.18 8.80 8.00 127.77 1.02 9.82 16 21 C -0.25 -12.21 9.31 84.04 0.78 -11.42 16 22 H 0.08 3.74 7.82 -2.91 -0.02 3.72 16 23 C -0.06 -2.87 5.10 84.86 0.43 -2.44 16 24 N -0.94 -53.44 10.72 21.65 0.23 -53.21 16 25 Si 0.97 41.69 29.57 68.60 2.03 43.72 16 26 H -0.26 -10.01 7.11 99.48 0.71 -9.31 16 27 H -0.30 -13.06 7.11 99.48 0.71 -12.36 16 28 H -0.30 -13.59 7.11 99.48 0.71 -12.89 16 29 H 0.04 1.46 7.67 -2.39 -0.02 1.44 16 30 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.04 1.54 8.14 -2.38 -0.02 1.52 16 32 H 0.04 1.57 6.86 -2.39 -0.02 1.55 16 33 H 0.07 2.16 8.14 -2.38 -0.02 2.14 16 34 H 0.41 12.45 7.89 -92.71 -0.73 11.72 16 35 H 0.13 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.11 2.00 8.14 -2.38 -0.02 1.98 16 37 H 0.06 1.56 8.10 -2.38 -0.02 1.55 16 38 H 0.06 1.66 8.10 -2.39 -0.02 1.64 16 39 H 0.09 1.13 7.66 -2.38 -0.02 1.11 16 40 H 0.08 1.17 7.66 -2.39 -0.02 1.16 16 41 H 0.16 1.57 6.30 -2.91 -0.02 1.56 16 42 H 0.16 0.63 8.06 -2.91 -0.02 0.61 16 43 H 0.17 0.55 8.06 -2.92 -0.02 0.53 16 44 H 0.16 1.60 8.06 -2.91 -0.02 1.58 16 45 H 0.00 0.01 7.34 -2.39 -0.02 -0.01 16 46 H 0.01 0.71 7.35 -2.38 -0.02 0.69 16 47 H 0.02 0.74 6.53 -2.38 -0.02 0.72 16 48 H 0.24 13.66 8.31 -92.71 -0.77 12.89 16 Total: -1.00 -70.58 398.43 4.17 -66.41 By element: Atomic # 1 Polarization: 19.74 SS G_CDS: 0.23 Total: 19.97 kcal Atomic # 6 Polarization: 5.53 SS G_CDS: 5.99 Total: 11.52 kcal Atomic # 7 Polarization: -102.17 SS G_CDS: -3.87 Total: -106.04 kcal Atomic # 8 Polarization: -31.21 SS G_CDS: -0.98 Total: -32.19 kcal Atomic # 9 Polarization: -4.16 SS G_CDS: 0.77 Total: -3.39 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 2.03 Total: 43.72 kcal Total: -70.58 4.17 -66.41 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755329383.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.792 kcal (2) G-P(sol) polarization free energy of solvation -70.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds