Wall clock time and date at job start Tue Mar 31 2020 22:01:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86798 * 119.99623 * 2 1 4 4 H 1.48495 * 109.47495 * 270.00066 * 3 2 1 5 5 H 1.48496 * 109.47323 * 30.00039 * 3 2 1 6 6 H 1.48503 * 109.46873 * 150.00070 * 3 2 1 7 7 C 1.38808 * 119.99828 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99330 * 180.02562 * 7 2 1 9 9 N 1.36929 * 120.00410 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99940 * 180.02562 * 9 7 2 11 11 H 1.08991 * 109.47119 * 34.99718 * 10 9 7 12 12 C 1.53006 * 109.46878 * 274.99762 * 10 9 7 13 13 O 1.42898 * 109.47108 * 295.00036 * 12 10 9 14 14 C 1.53000 * 109.47054 * 155.00291 * 10 9 7 15 15 N 1.46499 * 109.46840 * 304.99499 * 14 10 9 16 16 C 1.34779 * 119.99872 * 180.02562 * 15 14 10 17 17 O 1.21278 * 120.00071 * 359.97438 * 16 15 14 18 18 C 1.50703 * 119.99944 * 180.02562 * 16 15 14 19 19 N 1.46500 * 109.47155 * 60.00161 * 18 16 15 20 20 C 1.34599 * 126.43799 * 284.71280 * 19 18 16 21 21 N 1.31072 * 106.68169 * 179.87776 * 20 19 18 22 22 N 1.28847 * 107.98681 * 0.38682 * 21 20 19 23 23 N 1.28741 * 109.39482 * 359.75182 * 22 21 20 24 24 C 1.52996 * 109.46946 * 299.99948 * 18 16 15 25 25 C 1.53005 * 109.47245 * 179.97438 * 24 18 16 26 26 C 1.53000 * 109.46632 * 59.99973 * 25 24 18 27 27 C 1.52996 * 109.47518 * 300.00318 * 26 25 24 28 28 C 1.52997 * 109.47084 * 180.02562 * 18 16 15 29 29 H 0.96994 * 120.00251 * 359.97438 * 1 2 3 30 30 H 0.96996 * 119.99970 * 0.02562 * 9 7 2 31 31 H 1.08993 * 109.46955 * 55.00248 * 12 10 9 32 32 H 1.09004 * 109.46746 * 175.00105 * 12 10 9 33 33 H 0.96705 * 113.99356 * 179.97438 * 13 12 10 34 34 H 1.09002 * 109.47398 * 64.99825 * 14 10 9 35 35 H 1.09001 * 109.47194 * 185.00006 * 14 10 9 36 36 H 0.97000 * 120.00420 * 0.02562 * 15 14 10 37 37 H 1.08006 * 126.65763 * 0.02562 * 20 19 18 38 38 H 1.09001 * 109.47372 * 299.99872 * 24 18 16 39 39 H 1.09004 * 109.47108 * 60.00127 * 24 18 16 40 40 H 1.09001 * 109.46962 * 300.00283 * 25 24 18 41 41 H 1.08992 * 109.47457 * 180.02562 * 25 24 18 42 42 H 1.09000 * 109.46968 * 180.02562 * 26 25 24 43 43 H 1.09001 * 109.47194 * 60.00452 * 26 25 24 44 44 H 1.09001 * 109.46993 * 299.99696 * 27 26 25 45 45 H 1.09000 * 109.47380 * 180.02562 * 27 26 25 46 46 H 1.09002 * 109.47045 * 299.99967 * 28 18 16 47 47 H 1.09001 * 109.47375 * 60.00042 * 28 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0466 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0005 11 1 2.9689 -3.5504 0.5888 12 6 2.4221 -4.0355 -1.4376 13 8 1.2278 -4.2885 -2.1804 14 6 1.1811 -4.7521 0.6090 15 7 0.7345 -4.3355 1.9406 16 6 -0.0545 -5.1478 2.6716 17 8 -0.3951 -6.2234 2.2267 18 6 -0.5143 -4.7190 4.0412 19 7 -1.2879 -3.4797 3.9308 20 6 -0.7945 -2.2456 3.7180 21 7 -1.8206 -1.4308 3.6848 22 7 -2.8878 -2.1269 3.8759 23 7 -2.5694 -3.3654 4.0249 24 6 0.7032 -4.4822 4.9369 25 6 0.2364 -4.0462 6.3273 26 6 -0.6405 -5.1415 6.9375 27 6 -1.8580 -5.3784 6.0417 28 6 -1.3903 -5.8149 4.6513 29 1 -0.4850 0.8400 0.0004 30 1 0.3557 -2.3880 -0.0005 31 1 2.9716 -3.2163 -1.9012 32 1 3.0427 -4.9316 -1.4311 33 1 1.3831 -4.5344 -3.1027 34 1 0.3135 -4.9201 -0.0291 35 1 1.7560 -5.6746 0.6908 36 1 1.0066 -3.4751 2.2963 37 1 0.2450 -1.9790 3.5956 38 1 1.2787 -5.4042 5.0191 39 1 1.3277 -3.7016 4.5024 40 1 -0.3389 -3.1240 6.2448 41 1 1.1037 -3.8771 6.9653 42 1 -0.9734 -4.8308 7.9278 43 1 -0.0652 -6.0637 7.0200 44 1 -2.4333 -4.4562 5.9593 45 1 -2.4829 -6.1584 6.4766 46 1 -2.2577 -5.9840 4.0132 47 1 -0.8145 -6.7367 4.7335 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755634158.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:01:22 Heat of formation + Delta-G solvation = 45.355927 kcal Electronic energy + Delta-G solvation = -31811.974015 eV Core-core repulsion = 27647.042423 eV Total energy + Delta-G solvation = -4164.931592 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.185 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -44.05361 -40.55113 -38.28699 -37.17766 -35.15108 -34.50331 -33.71496 -32.48241 -31.44573 -31.03487 -30.55946 -28.42187 -25.81115 -24.64983 -23.84407 -23.65165 -22.86888 -22.49433 -20.61921 -20.32121 -20.09877 -18.10231 -17.44768 -17.29795 -16.68309 -16.30202 -16.08831 -15.61193 -15.17055 -15.00442 -14.61548 -14.48944 -14.21255 -13.74726 -13.58745 -13.48075 -13.30693 -13.10374 -12.95566 -12.87095 -12.63162 -12.46260 -12.10336 -11.81428 -11.55664 -11.53539 -11.20516 -10.99845 -10.94005 -10.89447 -10.83228 -10.74244 -10.70305 -10.51668 -10.15643 -10.07503 -9.85218 -9.67434 -9.45398 -9.04901 -8.94993 -7.11489 -5.84245 -3.17738 1.42364 1.73840 2.61826 2.71541 3.03065 3.36840 3.41658 3.46499 3.81718 4.13199 4.31820 4.45750 4.48364 4.65958 4.73889 4.78469 4.83143 4.91844 5.01651 5.08847 5.17045 5.25836 5.36473 5.38106 5.46425 5.47286 5.57334 5.67190 5.73177 5.74971 5.75989 5.87399 5.87625 5.91775 5.94673 6.03135 6.12623 6.15492 6.36851 6.38560 6.54146 6.58350 7.45524 7.57748 8.05176 8.12038 8.30116 8.91140 9.42755 9.94758 10.30985 11.35759 Molecular weight = 338.19amu Principal moments of inertia in cm(-1) A = 0.011175 B = 0.004631 C = 0.003774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2504.962443 B = 6044.617649 C = 7417.598888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.001 3.999 3 Si 0.903 3.097 4 H -0.291 1.291 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.262 4.262 8 H 0.069 0.931 9 N -0.713 5.713 10 C 0.166 3.834 11 H 0.067 0.933 12 C 0.059 3.941 13 O -0.561 6.561 14 C 0.116 3.884 15 N -0.702 5.702 16 C 0.507 3.493 17 O -0.522 6.522 18 C 0.163 3.837 19 N -0.299 5.299 20 C 0.174 3.826 21 N -0.283 5.283 22 N -0.080 5.080 23 N -0.090 5.090 24 C -0.128 4.128 25 C -0.122 4.122 26 C -0.122 4.122 27 C -0.126 4.126 28 C -0.098 4.098 29 H 0.259 0.741 30 H 0.388 0.612 31 H 0.050 0.950 32 H 0.026 0.974 33 H 0.365 0.635 34 H 0.079 0.921 35 H 0.067 0.933 36 H 0.406 0.594 37 H 0.228 0.772 38 H 0.103 0.897 39 H 0.083 0.917 40 H 0.063 0.937 41 H 0.078 0.922 42 H 0.067 0.933 43 H 0.067 0.933 44 H 0.075 0.925 45 H 0.074 0.926 46 H 0.089 0.911 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.885 -12.749 11.447 17.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.197 4.197 3 Si 0.733 3.267 4 H -0.218 1.218 5 H -0.216 1.216 6 H -0.208 1.208 7 C -0.393 4.393 8 H 0.087 0.913 9 N -0.355 5.355 10 C 0.054 3.946 11 H 0.085 0.915 12 C -0.022 4.022 13 O -0.364 6.364 14 C -0.008 4.008 15 N -0.353 5.353 16 C 0.288 3.712 17 O -0.396 6.396 18 C 0.076 3.924 19 N -0.104 5.104 20 C -0.125 4.125 21 N -0.130 5.130 22 N -0.074 5.074 23 N -0.076 5.076 24 C -0.166 4.166 25 C -0.159 4.159 26 C -0.160 4.160 27 C -0.164 4.164 28 C -0.136 4.136 29 H 0.069 0.931 30 H 0.222 0.778 31 H 0.068 0.932 32 H 0.044 0.956 33 H 0.210 0.790 34 H 0.097 0.903 35 H 0.085 0.915 36 H 0.243 0.757 37 H 0.244 0.756 38 H 0.121 0.879 39 H 0.102 0.898 40 H 0.082 0.918 41 H 0.097 0.903 42 H 0.085 0.915 43 H 0.086 0.914 44 H 0.094 0.906 45 H 0.093 0.907 46 H 0.108 0.892 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 3.087 -12.867 11.756 17.700 hybrid contribution 1.776 1.054 -0.893 2.250 sum 4.863 -11.812 10.863 16.769 Atomic orbital electron populations 1.69650 1.04938 1.26132 1.55184 1.24751 0.95386 0.97548 1.02029 0.86298 0.78616 0.84227 0.77538 1.21801 1.21574 1.20806 1.19123 0.90796 0.83865 1.45525 0.91259 1.42384 1.05943 0.98995 1.88204 1.20592 0.94886 0.86974 0.92119 0.91543 1.23032 0.86539 0.97330 0.95334 1.86566 1.32137 1.91919 1.25798 1.21697 0.99929 0.97365 0.81814 1.46074 1.49795 1.21193 1.18268 1.20130 0.79656 0.85558 0.85812 1.90736 1.56083 1.22330 1.70493 1.21522 0.93071 0.82492 0.95363 1.48615 1.05753 1.09056 1.46961 1.27603 1.03304 0.80559 1.01009 1.75116 0.94865 1.26369 1.16652 1.78650 1.19806 0.94574 1.14414 1.78770 0.94045 1.16633 1.18122 1.22073 0.94424 1.04597 0.95532 1.21572 1.00412 0.99150 0.94778 1.21602 0.96614 0.98797 0.98959 1.21689 0.97868 1.02974 0.93872 1.21577 0.99859 0.95320 0.96886 0.93069 0.77801 0.93158 0.95552 0.79026 0.90262 0.91502 0.75732 0.75633 0.87908 0.89827 0.91847 0.90307 0.91453 0.91400 0.90648 0.90718 0.89230 0.88775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.23 13.06 55.49 0.72 -25.51 16 2 C 0.00 0.04 5.50 -17.43 -0.10 -0.06 16 3 Si 0.90 21.09 29.55 -169.99 -5.02 16.06 16 4 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.26 -6.48 9.93 -15.06 -0.15 -6.63 16 8 H 0.07 1.65 7.83 -52.48 -0.41 1.24 16 9 N -0.71 -15.86 4.51 -53.42 -0.24 -16.10 16 10 C 0.17 2.87 2.84 -67.92 -0.19 2.67 16 11 H 0.07 1.07 8.08 -51.93 -0.42 0.65 16 12 C 0.06 0.95 6.86 37.16 0.25 1.21 16 13 O -0.56 -9.61 12.64 -35.23 -0.45 -10.05 16 14 C 0.12 1.86 5.12 -4.04 -0.02 1.84 16 15 N -0.70 -10.49 5.15 -60.29 -0.31 -10.80 16 16 C 0.51 7.54 6.73 -10.98 -0.07 7.46 16 17 O -0.52 -9.16 15.98 5.56 0.09 -9.07 16 18 C 0.16 1.97 0.69 -132.97 -0.09 1.87 16 19 N -0.30 -4.36 2.27 -50.89 -0.12 -4.48 16 20 C 0.17 2.76 10.33 -90.39 -0.93 1.83 16 21 N -0.28 -5.52 12.36 29.59 0.37 -5.15 16 22 N -0.08 -1.55 13.43 60.35 0.81 -0.74 16 23 N -0.09 -1.53 10.60 60.35 0.64 -0.89 16 24 C -0.13 -1.10 4.32 -26.73 -0.12 -1.22 16 25 C -0.12 -0.98 5.75 -26.73 -0.15 -1.14 16 26 C -0.12 -0.94 5.92 -26.73 -0.16 -1.10 16 27 C -0.13 -1.22 5.71 -26.71 -0.15 -1.37 16 28 C -0.10 -1.10 3.70 -26.71 -0.10 -1.20 16 29 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 30 H 0.39 9.88 7.80 -40.82 -0.32 9.56 16 31 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.03 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.36 4.49 9.12 45.56 0.42 4.90 16 34 H 0.08 1.51 7.39 -51.93 -0.38 1.12 16 35 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 36 H 0.41 5.93 5.88 -40.82 -0.24 5.69 16 37 H 0.23 3.01 6.91 -52.48 -0.36 2.65 16 38 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.08 0.66 6.84 -51.93 -0.36 0.31 16 40 H 0.06 0.63 7.08 -51.93 -0.37 0.27 16 41 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 43 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.07 0.90 6.15 -51.93 -0.32 0.58 16 45 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.09 1.19 8.00 -51.93 -0.42 0.77 16 47 H 0.09 0.93 8.10 -51.93 -0.42 0.50 16 LS Contribution 376.89 15.07 5.68 5.68 Total: -1.00 -33.05 376.89 -5.92 -38.98 By element: Atomic # 1 Polarization: 24.01 SS G_CDS: -6.12 Total: 17.90 kcal Atomic # 6 Polarization: 6.15 SS G_CDS: -1.98 Total: 4.17 kcal Atomic # 7 Polarization: -65.54 SS G_CDS: 1.87 Total: -63.66 kcal Atomic # 8 Polarization: -18.77 SS G_CDS: -0.36 Total: -19.13 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.05 -5.92 -38.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755634158.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.335 kcal (2) G-P(sol) polarization free energy of solvation -33.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.979 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds