Wall clock time and date at job start Tue Mar 31 2020 22:01:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86798 * 119.99623 * 2 1 4 4 H 1.48495 * 109.47495 * 270.00066 * 3 2 1 5 5 H 1.48496 * 109.47323 * 30.00039 * 3 2 1 6 6 H 1.48503 * 109.46873 * 150.00070 * 3 2 1 7 7 C 1.38808 * 119.99828 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99330 * 180.02562 * 7 2 1 9 9 N 1.36929 * 120.00410 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99940 * 180.02562 * 9 7 2 11 11 H 1.08991 * 109.47119 * 34.99718 * 10 9 7 12 12 C 1.53006 * 109.46878 * 274.99762 * 10 9 7 13 13 O 1.42898 * 109.47108 * 295.00036 * 12 10 9 14 14 C 1.53000 * 109.47054 * 155.00291 * 10 9 7 15 15 N 1.46499 * 109.46840 * 304.99499 * 14 10 9 16 16 C 1.34779 * 119.99872 * 180.02562 * 15 14 10 17 17 O 1.21278 * 120.00071 * 359.97438 * 16 15 14 18 18 C 1.50703 * 119.99944 * 180.02562 * 16 15 14 19 19 N 1.46500 * 109.47155 * 60.00161 * 18 16 15 20 20 C 1.34599 * 126.43799 * 284.71280 * 19 18 16 21 21 N 1.31072 * 106.68169 * 179.87776 * 20 19 18 22 22 N 1.28847 * 107.98681 * 0.38682 * 21 20 19 23 23 N 1.28741 * 109.39482 * 359.75182 * 22 21 20 24 24 C 1.52996 * 109.46946 * 299.99948 * 18 16 15 25 25 C 1.53005 * 109.47245 * 179.97438 * 24 18 16 26 26 C 1.53000 * 109.46632 * 59.99973 * 25 24 18 27 27 C 1.52996 * 109.47518 * 300.00318 * 26 25 24 28 28 C 1.52997 * 109.47084 * 180.02562 * 18 16 15 29 29 H 0.96994 * 120.00251 * 359.97438 * 1 2 3 30 30 H 0.96996 * 119.99970 * 0.02562 * 9 7 2 31 31 H 1.08993 * 109.46955 * 55.00248 * 12 10 9 32 32 H 1.09004 * 109.46746 * 175.00105 * 12 10 9 33 33 H 0.96705 * 113.99356 * 179.97438 * 13 12 10 34 34 H 1.09002 * 109.47398 * 64.99825 * 14 10 9 35 35 H 1.09001 * 109.47194 * 185.00006 * 14 10 9 36 36 H 0.97000 * 120.00420 * 0.02562 * 15 14 10 37 37 H 1.08006 * 126.65763 * 0.02562 * 20 19 18 38 38 H 1.09001 * 109.47372 * 299.99872 * 24 18 16 39 39 H 1.09004 * 109.47108 * 60.00127 * 24 18 16 40 40 H 1.09001 * 109.46962 * 300.00283 * 25 24 18 41 41 H 1.08992 * 109.47457 * 180.02562 * 25 24 18 42 42 H 1.09000 * 109.46968 * 180.02562 * 26 25 24 43 43 H 1.09001 * 109.47194 * 60.00452 * 26 25 24 44 44 H 1.09001 * 109.46993 * 299.99696 * 27 26 25 45 45 H 1.09000 * 109.47380 * 180.02562 * 27 26 25 46 46 H 1.09002 * 109.47045 * 299.99967 * 28 18 16 47 47 H 1.09001 * 109.47375 * 60.00042 * 28 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0466 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0005 11 1 2.9689 -3.5504 0.5888 12 6 2.4221 -4.0355 -1.4376 13 8 1.2278 -4.2885 -2.1804 14 6 1.1811 -4.7521 0.6090 15 7 0.7345 -4.3355 1.9406 16 6 -0.0545 -5.1478 2.6716 17 8 -0.3951 -6.2234 2.2267 18 6 -0.5143 -4.7190 4.0412 19 7 -1.2879 -3.4797 3.9308 20 6 -0.7945 -2.2456 3.7180 21 7 -1.8206 -1.4308 3.6848 22 7 -2.8878 -2.1269 3.8759 23 7 -2.5694 -3.3654 4.0249 24 6 0.7032 -4.4822 4.9369 25 6 0.2364 -4.0462 6.3273 26 6 -0.6405 -5.1415 6.9375 27 6 -1.8580 -5.3784 6.0417 28 6 -1.3903 -5.8149 4.6513 29 1 -0.4850 0.8400 0.0004 30 1 0.3557 -2.3880 -0.0005 31 1 2.9716 -3.2163 -1.9012 32 1 3.0427 -4.9316 -1.4311 33 1 1.3831 -4.5344 -3.1027 34 1 0.3135 -4.9201 -0.0291 35 1 1.7560 -5.6746 0.6908 36 1 1.0066 -3.4751 2.2963 37 1 0.2450 -1.9790 3.5956 38 1 1.2787 -5.4042 5.0191 39 1 1.3277 -3.7016 4.5024 40 1 -0.3389 -3.1240 6.2448 41 1 1.1037 -3.8771 6.9653 42 1 -0.9734 -4.8308 7.9278 43 1 -0.0652 -6.0637 7.0200 44 1 -2.4333 -4.4562 5.9593 45 1 -2.4829 -6.1584 6.4766 46 1 -2.2577 -5.9840 4.0132 47 1 -0.8145 -6.7367 4.7335 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755634158.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:01:21 Heat of formation + Delta-G solvation = 19.228820 kcal Electronic energy + Delta-G solvation = -31813.106971 eV Core-core repulsion = 27647.042423 eV Total energy + Delta-G solvation = -4166.064548 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.185 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -45.35747 -41.68696 -39.36304 -38.50430 -36.49881 -35.66993 -35.26739 -33.80106 -33.06188 -31.87088 -31.63600 -30.02344 -26.99456 -25.81244 -25.57498 -24.95322 -23.97018 -23.42809 -21.79893 -21.45983 -21.24753 -19.53141 -18.88829 -18.40395 -18.14607 -17.54424 -17.39930 -16.77528 -16.58378 -16.21944 -15.91881 -15.42604 -15.35569 -15.14861 -14.95084 -14.71467 -14.49980 -14.44801 -14.07437 -13.85656 -13.65485 -13.43108 -13.36245 -13.05019 -13.03654 -12.71478 -12.67701 -12.54672 -12.23134 -12.22364 -12.13402 -11.89617 -11.77696 -11.69036 -11.57025 -11.38760 -11.26176 -11.00881 -10.79352 -10.72018 -10.23552 -8.98191 -7.84570 -5.15169 0.14611 0.56804 1.22632 1.52105 1.53355 1.54611 1.62079 1.86855 2.60674 2.83878 3.21431 3.28140 3.39182 3.48984 3.61603 3.68963 3.88577 3.93380 3.97357 4.03540 4.05469 4.21345 4.29807 4.36210 4.40688 4.46672 4.55524 4.60501 4.62357 4.66824 4.80629 4.84251 4.93292 4.98978 5.03585 5.07052 5.14641 5.20536 5.22981 5.26073 5.28489 5.45970 5.60684 6.23584 6.30429 6.84866 7.04956 7.40268 7.55000 8.10865 8.36051 9.36165 Molecular weight = 338.19amu Principal moments of inertia in cm(-1) A = 0.011175 B = 0.004631 C = 0.003774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2504.962443 B = 6044.617649 C = 7417.598888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.060 4.060 3 Si 0.958 3.042 4 H -0.300 1.300 5 H -0.307 1.307 6 H -0.260 1.260 7 C -0.238 4.238 8 H 0.085 0.915 9 N -0.722 5.722 10 C 0.161 3.839 11 H 0.090 0.910 12 C 0.062 3.938 13 O -0.587 6.587 14 C 0.126 3.874 15 N -0.699 5.699 16 C 0.507 3.493 17 O -0.549 6.549 18 C 0.161 3.839 19 N -0.286 5.286 20 C 0.180 3.820 21 N -0.323 5.323 22 N -0.111 5.111 23 N -0.090 5.090 24 C -0.125 4.125 25 C -0.119 4.119 26 C -0.118 4.118 27 C -0.123 4.123 28 C -0.097 4.097 29 H 0.245 0.755 30 H 0.368 0.632 31 H 0.036 0.964 32 H 0.068 0.932 33 H 0.385 0.615 34 H 0.046 0.954 35 H 0.093 0.907 36 H 0.409 0.591 37 H 0.250 0.750 38 H 0.130 0.870 39 H 0.093 0.907 40 H 0.039 0.961 41 H 0.104 0.896 42 H 0.074 0.926 43 H 0.091 0.909 44 H 0.047 0.953 45 H 0.087 0.913 46 H 0.061 0.939 47 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.088 -14.587 12.737 20.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.605 5.605 2 C -0.254 4.254 3 Si 0.789 3.211 4 H -0.228 1.228 5 H -0.234 1.234 6 H -0.185 1.185 7 C -0.369 4.369 8 H 0.103 0.897 9 N -0.362 5.362 10 C 0.051 3.949 11 H 0.108 0.892 12 C -0.019 4.019 13 O -0.394 6.394 14 C 0.002 3.998 15 N -0.350 5.350 16 C 0.289 3.711 17 O -0.426 6.426 18 C 0.075 3.925 19 N -0.091 5.091 20 C -0.118 4.118 21 N -0.170 5.170 22 N -0.105 5.105 23 N -0.076 5.076 24 C -0.163 4.163 25 C -0.157 4.157 26 C -0.156 4.156 27 C -0.161 4.161 28 C -0.135 4.135 29 H 0.054 0.946 30 H 0.199 0.801 31 H 0.055 0.945 32 H 0.086 0.914 33 H 0.233 0.767 34 H 0.064 0.936 35 H 0.111 0.889 36 H 0.246 0.754 37 H 0.266 0.734 38 H 0.148 0.852 39 H 0.112 0.888 40 H 0.057 0.943 41 H 0.123 0.877 42 H 0.092 0.908 43 H 0.109 0.891 44 H 0.066 0.934 45 H 0.106 0.894 46 H 0.079 0.921 47 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 6.364 -14.751 13.041 20.692 hybrid contribution 0.838 1.435 -1.360 2.148 sum 7.202 -13.316 11.681 19.121 Atomic orbital electron populations 1.69826 1.06539 1.25552 1.58631 1.25374 0.95814 1.00413 1.03770 0.85377 0.78168 0.80762 0.76763 1.22778 1.23408 1.18476 1.19522 0.91427 0.84452 1.41504 0.89748 1.42499 1.05117 1.00285 1.88292 1.20905 0.95299 0.85105 0.93559 0.89192 1.22933 0.86457 0.98713 0.93792 1.86527 1.33158 1.92098 1.27605 1.21530 0.98627 0.97945 0.81665 1.46039 1.49835 1.21250 1.17875 1.20531 0.78950 0.85060 0.86519 1.90725 1.56936 1.23642 1.71312 1.21866 0.94462 0.81649 0.94517 1.48779 1.05062 1.09615 1.45601 1.27900 1.03534 0.80548 0.99821 1.75021 0.95824 1.27969 1.18221 1.78616 1.20482 0.95351 1.16021 1.78699 0.95329 1.15927 1.17681 1.22231 0.92760 1.06399 0.94928 1.21586 1.01120 0.98142 0.94805 1.21610 0.95686 0.99729 0.98529 1.21664 0.98905 1.01983 0.93523 1.21618 0.98940 0.95815 0.97110 0.94598 0.80050 0.94541 0.91426 0.76735 0.93578 0.88939 0.75417 0.73389 0.85152 0.88806 0.94262 0.87737 0.90767 0.89087 0.93413 0.89421 0.92057 0.86768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -56.36 13.06 21.65 0.28 -56.07 16 2 C -0.06 -3.17 5.50 84.86 0.47 -2.70 16 3 Si 0.96 43.44 29.55 68.60 2.03 45.47 16 4 H -0.30 -13.87 7.11 99.48 0.71 -13.16 16 5 H -0.31 -14.64 7.11 99.48 0.71 -13.93 16 6 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 7 C -0.24 -11.40 9.93 84.03 0.83 -10.56 16 8 H 0.08 3.77 7.83 -2.91 -0.02 3.74 16 9 N -0.72 -31.41 4.51 -322.94 -1.46 -32.87 16 10 C 0.16 5.16 2.84 44.99 0.13 5.29 16 11 H 0.09 2.52 8.08 -2.39 -0.02 2.50 16 12 C 0.06 1.82 6.86 71.98 0.49 2.32 16 13 O -0.59 -19.30 12.64 -148.98 -1.88 -21.19 16 14 C 0.13 3.83 5.12 86.38 0.44 4.27 16 15 N -0.70 -19.75 5.15 -463.05 -2.38 -22.14 16 16 C 0.51 14.39 6.73 87.66 0.59 14.98 16 17 O -0.55 -18.77 15.98 -3.02 -0.05 -18.82 16 18 C 0.16 3.66 0.69 2.86 0.00 3.66 16 19 N -0.29 -8.33 2.27 -314.92 -0.71 -9.05 16 20 C 0.18 5.77 10.33 180.27 1.86 7.63 16 21 N -0.32 -13.06 12.36 -60.29 -0.74 -13.81 16 22 N -0.11 -4.48 13.43 37.01 0.50 -3.99 16 23 N -0.09 -3.16 10.60 37.02 0.39 -2.77 16 24 C -0.12 -1.75 4.32 30.59 0.13 -1.62 16 25 C -0.12 -1.57 5.75 30.60 0.18 -1.39 16 26 C -0.12 -1.46 5.92 30.59 0.18 -1.28 16 27 C -0.12 -2.20 5.71 30.61 0.17 -2.02 16 28 C -0.10 -2.04 3.70 30.61 0.11 -1.93 16 29 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 30 H 0.37 18.95 7.80 -92.71 -0.72 18.23 16 31 H 0.04 1.17 8.14 -2.39 -0.02 1.16 16 32 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16 33 H 0.38 8.86 9.12 -74.05 -0.68 8.18 16 34 H 0.05 1.73 7.39 -2.39 -0.02 1.72 16 35 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 36 H 0.41 11.20 5.88 -92.71 -0.55 10.65 16 37 H 0.25 6.44 6.91 -2.91 -0.02 6.42 16 38 H 0.13 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.09 1.16 6.84 -2.38 -0.02 1.14 16 40 H 0.04 0.72 7.08 -2.39 -0.02 0.71 16 41 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 42 H 0.07 0.85 8.14 -2.39 -0.02 0.84 16 43 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 44 H 0.05 1.13 6.15 -2.39 -0.01 1.12 16 45 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 46 H 0.06 1.64 8.00 -2.39 -0.02 1.62 16 47 H 0.11 1.96 8.10 -2.39 -0.02 1.94 16 Total: -1.00 -74.62 376.89 0.65 -73.97 By element: Atomic # 1 Polarization: 45.54 SS G_CDS: -0.92 Total: 44.62 kcal Atomic # 6 Polarization: 11.04 SS G_CDS: 5.60 Total: 16.63 kcal Atomic # 7 Polarization: -136.56 SS G_CDS: -4.13 Total: -140.68 kcal Atomic # 8 Polarization: -38.07 SS G_CDS: -1.93 Total: -40.00 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Total: -74.62 0.65 -73.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755634158.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.198 kcal (2) G-P(sol) polarization free energy of solvation -74.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds