Wall clock time and date at job start Tue Mar 31 2020 22:10:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47208 * 2 1 4 4 N 1.46507 * 109.46936 * 119.99572 * 2 1 3 5 5 C 1.34773 * 119.99999 * 275.00450 * 4 2 1 6 6 O 1.21604 * 120.00118 * 359.97438 * 5 4 2 7 7 C 1.47427 * 119.99862 * 180.02562 * 5 4 2 8 8 C 1.41291 * 126.41769 * 0.02562 * 7 5 4 9 9 N 1.30445 * 108.02438 * 179.97438 * 8 7 5 10 10 N 1.39932 * 108.89582 * 0.02562 * 9 8 7 11 11 C 1.46503 * 125.75318 * 179.97438 * 10 9 8 12 12 C 1.53008 * 109.47197 * 305.03001 * 11 10 9 13 13 F 1.39898 * 109.47116 * 179.97438 * 12 11 10 14 14 C 1.34254 * 108.49567 * 359.74679 * 10 9 8 15 15 C 1.52995 * 109.47141 * 239.99467 * 2 1 3 16 16 H 1.09003 * 109.52643 * 300.08122 * 15 2 1 17 17 C 1.53032 * 109.49874 * 60.16389 * 15 2 1 18 18 C 1.53349 * 109.61009 * 181.32516 * 17 15 2 19 19 C 1.53194 * 109.14721 * 298.71227 * 18 17 15 20 20 N 1.46924 * 108.89447 * 54.57940 * 19 18 17 21 21 C 1.36930 * 120.63300 * 126.34039 * 20 19 18 22 22 H 1.07996 * 120.00049 * 331.82927 * 21 20 19 23 23 C 1.38816 * 120.00324 * 151.82723 * 21 20 19 24 24 N 1.31624 * 119.99356 * 343.06571 * 23 21 20 25 25 Si 1.86793 * 120.00395 * 163.06593 * 23 21 20 26 26 H 1.48500 * 109.46960 * 359.97438 * 25 23 21 27 27 H 1.48494 * 109.47338 * 119.99948 * 25 23 21 28 28 H 1.48503 * 109.47085 * 239.99957 * 25 23 21 29 29 C 1.46929 * 118.73622 * 306.31812 * 20 19 18 30 30 H 1.08997 * 109.47208 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47019 * 300.00172 * 1 2 3 32 32 H 1.08996 * 109.46921 * 60.00276 * 1 2 3 33 33 H 0.97006 * 119.99689 * 94.99601 * 4 2 1 34 34 H 1.07996 * 125.98515 * 359.95743 * 8 7 5 35 35 H 1.08999 * 109.47114 * 65.02497 * 11 10 9 36 36 H 1.09000 * 109.47716 * 185.02479 * 11 10 9 37 37 H 1.09002 * 109.46757 * 299.99251 * 12 11 10 38 38 H 1.08992 * 109.47509 * 59.99285 * 12 11 10 39 39 H 1.08002 * 126.29521 * 180.24245 * 14 10 9 40 40 H 1.09005 * 109.46307 * 301.33481 * 17 15 2 41 41 H 1.09000 * 109.45960 * 61.30692 * 17 15 2 42 42 H 1.08999 * 109.68685 * 178.74908 * 18 17 15 43 43 H 1.08997 * 109.47481 * 58.54798 * 18 17 15 44 44 H 1.08999 * 109.58554 * 294.71486 * 19 18 17 45 45 H 1.09001 * 109.58356 * 174.43691 * 19 18 17 46 46 H 0.96997 * 119.99488 * 180.02562 * 24 23 21 47 47 H 1.09002 * 109.58736 * 173.39352 * 29 20 19 48 48 H 1.09002 * 109.58596 * 293.82293 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 2.1469 -0.0182 2.3572 6 8 1.8581 1.1618 2.4116 7 6 2.6389 -0.7130 3.5609 8 6 3.0130 -2.0725 3.6506 9 7 3.3924 -2.3066 4.8765 10 7 3.2803 -1.1258 5.6189 11 6 3.6094 -0.9726 7.0383 12 6 2.8304 -2.0043 7.8567 13 9 3.1451 -1.8584 9.2120 14 6 2.8252 -0.1557 4.8101 15 6 2.0400 -0.7213 -1.2491 16 1 1.6760 -1.7488 -1.2507 17 6 1.5336 0.0018 -2.4991 18 6 2.0159 -0.7382 -3.7527 19 6 3.5476 -0.7383 -3.7780 20 7 4.0443 -1.3008 -2.5148 21 6 4.9307 -2.3444 -2.5165 22 1 4.9360 -3.0471 -3.3365 23 6 5.8227 -2.4992 -1.4641 24 7 6.0565 -1.4946 -0.6465 25 14 6.6912 -4.1331 -1.2084 26 1 6.2578 -5.0931 -2.2553 27 1 8.1598 -3.9324 -1.2975 28 1 6.3457 -4.6730 0.1312 29 6 3.5720 -0.7218 -1.2497 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 2.2490 -1.6318 1.1528 34 1 2.9887 -2.7918 2.8454 35 1 4.6787 -1.1272 7.1821 36 1 3.3400 0.0309 7.3675 37 1 1.7610 -1.8496 7.7130 38 1 3.0998 -3.0078 7.5275 39 1 2.6371 0.8712 5.0864 40 1 0.4439 0.0251 -2.4889 41 1 1.9185 1.0216 -2.5096 42 1 1.6374 -0.2368 -4.6435 43 1 1.6523 -1.7655 -3.7307 44 1 3.9113 0.2829 -3.8913 45 1 3.8992 -1.3460 -4.6118 46 1 6.6800 -1.6026 0.0886 47 1 3.9375 -1.3200 -0.4150 48 1 3.9377 0.3009 -1.1568 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025465962.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:10:14 Heat of formation + Delta-G solvation = -0.116606 kcal Electronic energy + Delta-G solvation = -29905.582781 eV Core-core repulsion = 25718.759390 eV Total energy + Delta-G solvation = -4186.823390 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.186 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -48.16265 -41.46198 -39.29241 -37.67380 -35.00982 -34.49316 -33.02218 -31.36838 -30.52942 -29.85902 -29.17413 -28.48114 -25.23385 -24.37184 -23.65364 -22.42518 -21.95230 -20.98082 -20.24573 -19.90466 -19.04562 -17.99382 -16.86548 -16.77309 -16.46416 -15.87224 -15.71168 -15.35134 -14.96821 -14.90667 -14.36957 -14.16982 -14.02677 -13.76368 -13.56150 -13.25630 -13.14830 -13.12986 -12.80577 -12.61304 -12.42195 -12.12296 -11.97493 -11.87802 -11.47711 -11.35607 -11.06264 -10.97335 -10.89190 -10.68590 -10.41324 -10.19265 -10.05183 -9.88604 -9.74188 -9.68221 -9.48905 -9.36284 -8.85722 -8.54666 -8.45147 -6.64876 -5.78005 -3.20915 1.45721 2.02419 2.18504 3.34924 3.44344 3.45928 3.55999 3.71083 3.82872 4.12236 4.47499 4.48576 4.51414 4.63688 4.76859 4.94894 5.07589 5.18695 5.27260 5.35400 5.39679 5.52591 5.55991 5.59503 5.65197 5.69012 5.84408 5.86552 6.11770 6.19588 6.22998 6.31892 6.35537 6.47202 6.49430 6.52807 6.60385 6.69639 6.81195 6.91707 6.93764 7.04484 7.37129 7.39765 7.68059 7.80122 7.94037 8.45228 8.62333 9.21917 9.85409 10.43109 11.29331 Molecular weight = 338.19amu Principal moments of inertia in cm(-1) A = 0.010912 B = 0.003302 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2565.428383 B = 8478.602801 C =10562.372575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.153 3.847 3 H 0.084 0.916 4 N -0.709 5.709 5 C 0.597 3.403 6 O -0.559 6.559 7 C -0.280 4.280 8 C 0.093 3.907 9 N -0.299 5.299 10 N -0.369 5.369 11 C 0.104 3.896 12 C 0.053 3.947 13 F -0.208 7.208 14 C 0.127 3.873 15 C -0.121 4.121 16 H 0.067 0.933 17 C -0.102 4.102 18 C -0.133 4.133 19 C 0.143 3.857 20 N -0.593 5.593 21 C -0.252 4.252 22 H 0.065 0.935 23 C 0.004 3.996 24 N -0.898 5.898 25 Si 0.897 3.103 26 H -0.278 1.278 27 H -0.291 1.291 28 H -0.289 1.289 29 C 0.181 3.819 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.065 0.935 33 H 0.400 0.600 34 H 0.193 0.807 35 H 0.100 0.900 36 H 0.110 0.890 37 H 0.082 0.918 38 H 0.092 0.908 39 H 0.188 0.812 40 H 0.050 0.950 41 H 0.055 0.945 42 H 0.050 0.950 43 H 0.056 0.944 44 H 0.016 0.984 45 H 0.051 0.949 46 H 0.252 0.748 47 H 0.089 0.911 48 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.457 1.279 11.662 15.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.048 3.952 3 H 0.102 0.898 4 N -0.358 5.358 5 C 0.384 3.616 6 O -0.439 6.439 7 C -0.295 4.295 8 C -0.095 4.095 9 N -0.118 5.118 10 N -0.149 5.149 11 C -0.019 4.019 12 C -0.003 4.003 13 F -0.189 7.189 14 C -0.023 4.023 15 C -0.142 4.142 16 H 0.086 0.914 17 C -0.140 4.140 18 C -0.172 4.172 19 C 0.016 3.984 20 N -0.315 5.315 21 C -0.381 4.381 22 H 0.082 0.918 23 C -0.195 4.195 24 N -0.542 5.542 25 Si 0.727 3.273 26 H -0.203 1.203 27 H -0.218 1.218 28 H -0.215 1.215 29 C 0.055 3.945 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.234 0.766 34 H 0.209 0.791 35 H 0.119 0.881 36 H 0.129 0.871 37 H 0.100 0.900 38 H 0.111 0.889 39 H 0.205 0.795 40 H 0.069 0.931 41 H 0.074 0.926 42 H 0.068 0.932 43 H 0.075 0.925 44 H 0.034 0.966 45 H 0.069 0.931 46 H 0.062 0.938 47 H 0.107 0.893 48 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -10.038 1.244 12.811 16.323 hybrid contribution 0.491 -0.636 -0.359 0.880 sum -9.548 0.608 12.452 15.703 Atomic orbital electron populations 1.22212 0.96121 1.01665 1.01900 1.20953 0.92901 0.97546 0.83780 0.89763 1.45778 1.66698 1.14109 1.09209 1.17118 0.76637 0.85716 0.82081 1.90731 1.52235 1.15520 1.85381 1.20359 1.18757 0.95017 0.95385 1.24176 0.95011 0.95559 0.94731 1.77164 1.24842 1.04703 1.05135 1.48220 1.50267 1.07560 1.08837 1.22267 1.02312 1.01627 0.75658 1.22161 1.00726 1.01316 0.76055 1.92798 1.94760 1.97257 1.34107 1.22949 0.94319 0.95233 0.89820 1.22151 1.01325 0.98650 0.92027 0.91427 1.21490 0.98770 0.99014 0.94719 1.22049 0.99069 0.99828 0.96293 1.20923 0.91078 0.96319 0.90049 1.44051 1.49923 1.38014 0.99504 1.19210 1.10266 1.01572 1.07081 0.91766 1.25027 0.97085 0.97238 1.00162 1.70057 1.36765 1.28670 1.18748 0.86310 0.79264 0.84001 0.77751 1.20301 1.21814 1.21522 1.20770 0.86263 0.97204 0.90271 0.92823 0.92721 0.91599 0.76551 0.79056 0.88135 0.87135 0.89987 0.88926 0.79473 0.93117 0.92620 0.93151 0.92482 0.96618 0.93052 0.93760 0.89262 0.96598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.17 9.14 37.16 0.34 -1.83 16 2 C 0.15 2.45 2.16 -67.93 -0.15 2.30 16 3 H 0.08 1.53 7.58 -51.93 -0.39 1.14 16 4 N -0.71 -11.10 4.47 -54.88 -0.25 -11.34 16 5 C 0.60 9.83 7.78 -12.52 -0.10 9.73 16 6 O -0.56 -10.66 16.56 5.27 0.09 -10.58 16 7 C -0.28 -3.97 6.13 -105.07 -0.64 -4.61 16 8 C 0.09 1.25 11.50 -16.98 -0.20 1.05 16 9 N -0.30 -3.96 12.33 30.86 0.38 -3.57 16 10 N -0.37 -4.00 3.65 -60.80 -0.22 -4.22 16 11 C 0.10 0.74 6.94 -4.04 -0.03 0.71 16 12 C 0.05 0.38 7.73 37.16 0.29 0.66 16 13 F -0.21 -1.79 17.36 2.25 0.04 -1.75 16 14 C 0.13 1.49 11.25 -16.56 -0.19 1.30 16 15 C -0.12 -2.12 1.98 -90.50 -0.18 -2.30 16 16 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 17 C -0.10 -1.63 4.86 -26.53 -0.13 -1.76 16 18 C -0.13 -2.24 6.11 -26.45 -0.16 -2.40 16 19 C 0.14 2.95 6.50 -3.71 -0.02 2.93 16 20 N -0.59 -14.43 2.99 -172.32 -0.52 -14.95 16 21 C -0.25 -6.72 9.58 -15.06 -0.14 -6.86 16 22 H 0.06 1.70 7.88 -52.49 -0.41 1.29 16 23 C 0.00 0.10 4.92 -17.43 -0.09 0.01 16 24 N -0.90 -25.37 11.20 55.49 0.62 -24.75 16 25 Si 0.90 21.15 29.59 -169.99 -5.03 16.12 16 26 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 27 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 28 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 29 C 0.18 4.09 4.34 -3.71 -0.02 4.08 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.07 0.81 6.40 -51.93 -0.33 0.48 16 33 H 0.40 5.83 7.37 -40.82 -0.30 5.53 16 34 H 0.19 2.23 7.50 -52.49 -0.39 1.84 16 35 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.11 0.51 8.06 -51.93 -0.42 0.09 16 37 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.19 1.73 8.06 -52.49 -0.42 1.30 16 40 H 0.05 0.70 6.37 -51.93 -0.33 0.37 16 41 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 45 H 0.05 1.04 7.93 -51.93 -0.41 0.63 16 46 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 47 H 0.09 2.20 5.57 -51.93 -0.29 1.91 16 48 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 390.97 15.07 5.89 5.89 Total: -1.00 -32.77 390.97 -7.90 -40.66 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: -7.49 Total: 5.47 kcal Atomic # 6 Polarization: 4.44 SS G_CDS: -1.41 Total: 3.03 kcal Atomic # 7 Polarization: -58.86 SS G_CDS: 0.02 Total: -58.84 kcal Atomic # 8 Polarization: -10.66 SS G_CDS: 0.09 Total: -10.58 kcal Atomic # 9 Polarization: -1.79 SS G_CDS: 0.04 Total: -1.75 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.03 Total: 16.12 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -32.77 -7.90 -40.66 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025465962.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.548 kcal (2) G-P(sol) polarization free energy of solvation -32.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds