Wall clock time and date at job start Tue Mar 31 2020 22:13:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 109.47129 * 2 1 4 4 C 1.50696 * 109.47496 * 239.99925 * 2 1 3 5 5 H 1.08005 * 120.00070 * 240.00294 * 4 2 1 6 6 C 1.37881 * 120.00203 * 59.99659 * 4 2 1 7 7 N 1.31516 * 119.99426 * 0.02562 * 6 4 2 8 8 Si 1.86792 * 120.00111 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47289 * 89.99957 * 8 6 4 10 10 H 1.48503 * 109.46991 * 210.00222 * 8 6 4 11 11 H 1.48503 * 109.47363 * 330.00312 * 8 6 4 12 12 N 1.46902 * 109.47101 * 119.99805 * 2 1 3 13 13 C 1.46897 * 111.00186 * 58.95455 * 12 2 1 14 14 C 1.38585 * 110.99738 * 295.00254 * 12 2 1 15 15 N 1.31212 * 126.47478 * 73.44136 * 14 12 2 16 16 N 1.28527 * 109.86152 * 180.02562 * 15 14 12 17 17 C 1.30294 * 110.05519 * 359.97438 * 16 15 14 18 18 C 1.50700 * 126.34791 * 180.02562 * 17 16 15 19 19 H 1.08999 * 110.74903 * 176.55172 * 18 17 16 20 20 C 1.55303 * 110.84686 * 300.02197 * 18 17 16 21 21 C 1.54945 * 100.97929 * 152.50876 * 20 18 17 22 22 O 1.43694 * 105.11076 * 323.61087 * 21 20 18 23 23 C 1.43237 * 109.99324 * 24.36810 * 22 21 20 24 24 N 1.36455 * 126.47234 * 253.74635 * 14 12 2 25 25 C 1.46508 * 127.13670 * 0.02562 * 24 14 12 26 26 H 1.09006 * 115.54576 * 151.38111 * 25 24 14 27 27 C 1.52991 * 117.49836 * 5.71115 * 25 24 14 28 28 C 1.52991 * 117.49855 * 297.04887 * 25 24 14 29 29 H 1.09004 * 117.49886 * 0.02562 * 28 25 24 30 30 C 1.52994 * 117.50069 * 214.97771 * 28 25 24 31 31 F 1.39901 * 109.47464 * 180.02562 * 30 28 25 32 32 H 1.09003 * 109.47407 * 299.99945 * 1 2 3 33 33 H 1.08997 * 109.47132 * 60.00272 * 1 2 3 34 34 H 1.08998 * 109.47129 * 179.97438 * 1 2 3 35 35 H 0.97001 * 119.99449 * 179.97438 * 7 6 4 36 36 H 1.09000 * 109.47076 * 292.66090 * 13 12 2 37 37 H 1.09000 * 109.46700 * 52.65419 * 13 12 2 38 38 H 1.09001 * 109.47374 * 172.65626 * 13 12 2 39 39 H 1.08999 * 111.12583 * 270.44565 * 20 18 17 40 40 H 1.09007 * 111.12486 * 34.56867 * 20 18 17 41 41 H 1.08998 * 110.31384 * 82.49463 * 21 20 18 42 42 H 1.09012 * 110.30921 * 204.66433 * 21 20 18 43 43 H 1.09000 * 109.82658 * 238.81107 * 23 22 21 44 44 H 1.09005 * 109.90851 * 117.87794 * 23 22 21 45 45 H 1.09001 * 117.50120 * 0.02562 * 27 25 24 46 46 H 1.09006 * 117.49867 * 144.99670 * 27 25 24 47 47 H 1.08994 * 109.47304 * 300.00631 * 30 28 25 48 48 H 1.09006 * 109.46818 * 60.00436 * 30 28 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3215 -1.1204 -4.0078 9 1 1.3430 -2.1618 -4.4117 10 1 2.4867 -0.1414 -5.1122 11 1 3.6294 -1.7584 -3.7120 12 7 2.0196 -0.6925 1.1995 13 6 1.5283 -2.0761 1.2461 14 6 1.6696 -0.0022 2.3491 15 7 0.4719 0.0727 2.8797 16 7 0.5092 0.7959 3.9416 17 6 1.7230 1.2213 4.1500 18 6 2.1799 2.0948 5.2899 19 1 3.2585 2.2472 5.2513 20 6 1.4289 3.4542 5.2799 21 6 1.4722 3.8263 6.7833 22 8 1.3254 2.5794 7.4822 23 6 1.7577 1.4973 6.6493 24 7 2.5042 0.7328 3.1397 25 6 3.9401 0.9512 2.9474 26 1 4.3297 1.8901 3.3410 27 6 4.5720 0.4064 1.6650 28 6 4.8551 -0.2735 3.0069 29 1 4.3888 -1.2419 3.1887 30 6 6.2471 -0.0866 3.6136 31 9 6.9363 -1.3037 3.5835 32 1 -0.3634 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 -0.3633 -1.0276 -0.0005 35 1 0.7095 1.1617 -3.4844 36 1 0.4486 -2.0734 1.3952 37 1 1.7641 -2.5771 0.3072 38 1 2.0077 -2.6043 2.0703 39 1 1.9593 4.1915 4.6773 40 1 0.4021 3.3332 4.9344 41 1 2.4276 4.2885 7.0314 42 1 0.6503 4.4985 7.0306 43 1 0.9392 0.7920 6.5050 44 1 2.6057 0.9903 7.1097 45 1 3.9194 -0.1142 0.9641 46 1 5.3773 0.9868 1.2148 47 1 6.7979 0.6567 3.0372 48 1 6.1513 0.2516 4.6454 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001417467708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:00 Heat of formation + Delta-G solvation = 33.213133 kcal Electronic energy + Delta-G solvation = -31124.512544 eV Core-core repulsion = 26939.134439 eV Total energy + Delta-G solvation = -4185.378105 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.186 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -47.72868 -42.75292 -39.44213 -37.97295 -37.27524 -33.49625 -32.98964 -32.41205 -30.03834 -29.02016 -28.03256 -27.55450 -25.58665 -25.28540 -23.46376 -23.28662 -22.45761 -21.43047 -21.01407 -20.09292 -19.20876 -17.51048 -16.67184 -16.47576 -16.26170 -16.03501 -15.93460 -15.69477 -15.47411 -15.07431 -14.86266 -14.65681 -14.08313 -13.90370 -13.47531 -13.43157 -13.23741 -12.67230 -12.41935 -12.20173 -11.84550 -11.79090 -11.67556 -11.56356 -11.41696 -11.35051 -11.28078 -11.18361 -11.09934 -11.01016 -10.81280 -10.65627 -10.39480 -10.20719 -10.13818 -9.99870 -9.70106 -9.42814 -9.01406 -8.61251 -8.52272 -7.76863 -6.16180 -4.23451 1.92437 2.40556 3.14517 3.22393 3.29922 3.32178 3.53396 3.63092 4.04812 4.20099 4.32107 4.38562 4.41391 4.50243 4.55844 4.68509 4.78349 4.80316 4.86243 4.91964 5.00109 5.13501 5.16472 5.27218 5.42572 5.49820 5.59744 5.61694 5.70700 5.77383 5.82524 5.95925 6.03840 6.11461 6.26440 6.31401 6.52982 6.69696 6.74098 6.76806 6.90482 6.95612 7.04909 7.41006 7.51847 7.65128 7.80151 8.14771 8.32294 8.79949 9.10592 9.42369 10.90341 Molecular weight = 338.19amu Principal moments of inertia in cm(-1) A = 0.011277 B = 0.003958 C = 0.003241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2482.280587 B = 7072.312954 C = 8638.492929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.223 3.777 3 H 0.038 0.962 4 C -0.512 4.512 5 H 0.067 0.933 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.900 3.100 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.272 1.272 12 N -0.467 5.467 13 C 0.042 3.958 14 C 0.381 3.619 15 N -0.311 5.311 16 N -0.281 5.281 17 C 0.165 3.835 18 C -0.027 4.027 19 H 0.096 0.904 20 C -0.145 4.145 21 C 0.053 3.947 22 O -0.381 6.381 23 C 0.066 3.934 24 N -0.441 5.441 25 C 0.064 3.936 26 H 0.137 0.863 27 C -0.155 4.155 28 C -0.189 4.189 29 H 0.120 0.880 30 C 0.098 3.902 31 F -0.212 7.212 32 H 0.029 0.971 33 H 0.087 0.913 34 H 0.033 0.967 35 H 0.263 0.737 36 H 0.044 0.956 37 H 0.092 0.908 38 H 0.044 0.956 39 H 0.086 0.914 40 H 0.093 0.907 41 H 0.061 0.939 42 H 0.089 0.911 43 H 0.084 0.916 44 H 0.071 0.929 45 H 0.165 0.835 46 H 0.106 0.894 47 H 0.079 0.921 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.632 4.193 14.459 17.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.119 3.881 3 H 0.056 0.944 4 C -0.550 4.550 5 H 0.085 0.915 6 C -0.138 4.138 7 N -0.525 5.525 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.212 1.212 11 H -0.197 1.197 12 N -0.193 5.193 13 C -0.106 4.106 14 C 0.026 3.974 15 N -0.154 5.154 16 N -0.122 5.122 17 C -0.102 4.102 18 C -0.048 4.048 19 H 0.115 0.885 20 C -0.184 4.184 21 C -0.023 4.023 22 O -0.300 6.300 23 C -0.011 4.011 24 N -0.133 5.133 25 C -0.041 4.041 26 H 0.154 0.846 27 C -0.192 4.192 28 C -0.209 4.209 29 H 0.138 0.862 30 C 0.043 3.957 31 F -0.193 7.193 32 H 0.048 0.952 33 H 0.105 0.895 34 H 0.052 0.948 35 H 0.073 0.927 36 H 0.062 0.938 37 H 0.111 0.889 38 H 0.063 0.937 39 H 0.105 0.895 40 H 0.112 0.888 41 H 0.079 0.921 42 H 0.107 0.893 43 H 0.103 0.897 44 H 0.089 0.911 45 H 0.182 0.818 46 H 0.124 0.876 47 H 0.097 0.903 48 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 7.505 4.022 14.661 16.954 hybrid contribution 1.003 -0.146 -1.377 1.710 sum 8.509 3.876 13.284 16.244 Atomic orbital electron populations 1.22414 0.98861 1.00252 1.01634 1.19445 0.91475 0.93949 0.83279 0.94439 1.20983 1.31893 1.13031 0.89115 0.91474 1.24899 0.94869 0.94967 0.99040 1.69907 1.36130 1.22642 1.23788 0.86467 0.79281 0.79298 0.82215 1.20600 1.21235 1.19702 1.59582 1.58293 1.02958 0.98468 1.22282 0.98975 0.86891 1.02431 1.22962 0.84916 0.95356 0.94139 1.74788 1.17418 1.17742 1.05465 1.73933 1.15922 1.10839 1.11473 1.23950 0.88808 1.03701 0.93693 1.20930 1.00501 0.93155 0.90221 0.88530 1.23365 1.02809 0.94909 0.97283 1.23379 1.01583 0.87150 0.90184 1.88421 1.86755 1.14939 1.39864 1.23123 1.00274 0.90133 0.87582 1.45688 1.08269 1.38990 1.20355 1.21821 0.76968 0.97797 1.07556 0.84587 1.24315 1.02613 1.01079 0.91226 1.23431 0.95675 0.98290 1.03475 0.86165 1.21479 0.89607 0.82831 1.01824 1.92785 1.80773 1.47703 1.98028 0.95163 0.89453 0.94786 0.92713 0.93780 0.88949 0.93704 0.89541 0.88800 0.92053 0.89321 0.89737 0.91085 0.81764 0.87591 0.90279 0.90595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.23 8.20 37.15 0.30 -3.93 16 2 C 0.22 5.27 1.87 -68.87 -0.13 5.14 16 3 H 0.04 1.00 8.11 -51.93 -0.42 0.57 16 4 C -0.51 -12.74 7.84 -34.44 -0.27 -13.01 16 5 H 0.07 1.63 6.79 -52.48 -0.36 1.28 16 6 C 0.07 1.67 5.30 -17.82 -0.09 1.58 16 7 N -0.89 -24.05 11.32 55.43 0.63 -23.42 16 8 Si 0.90 20.05 29.54 -169.99 -5.02 15.03 16 9 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 10 H -0.29 -6.43 7.11 56.52 0.40 -6.02 16 11 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 12 N -0.47 -9.38 2.10 -176.09 -0.37 -9.75 16 13 C 0.04 0.79 8.66 60.06 0.52 1.31 16 14 C 0.38 7.49 6.05 -318.87 -1.93 5.56 16 15 N -0.31 -6.60 9.85 30.31 0.30 -6.30 16 16 N -0.28 -5.39 11.83 32.99 0.39 -5.00 16 17 C 0.17 2.59 6.65 -154.02 -1.02 1.56 16 18 C -0.03 -0.30 3.39 -89.83 -0.30 -0.61 16 19 H 0.10 0.84 7.25 -51.93 -0.38 0.46 16 20 C -0.15 -1.49 6.60 -24.48 -0.16 -1.65 16 21 C 0.05 0.48 7.78 38.18 0.30 0.78 16 22 O -0.38 -4.55 11.36 -35.23 -0.40 -4.95 16 23 C 0.07 0.76 7.40 37.88 0.28 1.04 16 24 N -0.44 -7.16 3.14 -107.01 -0.34 -7.49 16 25 C 0.06 0.80 6.21 -67.94 -0.42 0.38 16 26 H 0.14 1.25 7.61 -51.93 -0.40 0.85 16 27 C -0.16 -2.12 9.57 -26.70 -0.26 -2.38 16 28 C -0.19 -2.23 6.06 -90.59 -0.55 -2.78 16 29 H 0.12 1.68 8.14 -51.93 -0.42 1.25 16 30 C 0.10 0.89 7.83 37.15 0.29 1.18 16 31 F -0.21 -2.58 17.36 2.25 0.04 -2.54 16 32 H 0.03 0.74 6.06 -51.93 -0.31 0.42 16 33 H 0.09 2.35 6.07 -51.93 -0.32 2.03 16 34 H 0.03 0.81 6.55 -51.93 -0.34 0.47 16 35 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 36 H 0.04 0.88 6.44 -51.93 -0.33 0.55 16 37 H 0.09 1.77 6.33 -51.93 -0.33 1.44 16 38 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.09 1.17 8.01 -51.92 -0.42 0.75 16 41 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.09 0.70 8.14 -51.92 -0.42 0.28 16 43 H 0.08 1.13 7.57 -51.93 -0.39 0.74 16 44 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 45 H 0.17 2.92 4.90 -51.93 -0.25 2.66 16 46 H 0.11 1.21 8.05 -51.93 -0.42 0.79 16 47 H 0.08 0.57 7.90 -51.93 -0.41 0.16 16 48 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 380.18 15.07 5.73 5.73 Total: -1.00 -30.04 380.18 -9.66 -39.69 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -7.17 Total: 4.81 kcal Atomic # 6 Polarization: -2.37 SS G_CDS: -3.45 Total: -5.82 kcal Atomic # 7 Polarization: -52.57 SS G_CDS: 0.61 Total: -51.96 kcal Atomic # 8 Polarization: -4.55 SS G_CDS: -0.40 Total: -4.95 kcal Atomic # 9 Polarization: -2.58 SS G_CDS: 0.04 Total: -2.54 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.03 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -30.04 -9.66 -39.69 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001417467708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.908 kcal (2) G-P(sol) polarization free energy of solvation -30.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.695 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds