Wall clock time and date at job start Tue Mar 31 2020 22:12:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 109.47129 * 2 1 4 4 C 1.50696 * 109.47496 * 239.99925 * 2 1 3 5 5 H 1.08005 * 120.00070 * 240.00294 * 4 2 1 6 6 C 1.37881 * 120.00203 * 59.99659 * 4 2 1 7 7 N 1.31516 * 119.99426 * 0.02562 * 6 4 2 8 8 Si 1.86792 * 120.00111 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47289 * 89.99957 * 8 6 4 10 10 H 1.48503 * 109.46991 * 210.00222 * 8 6 4 11 11 H 1.48503 * 109.47363 * 330.00312 * 8 6 4 12 12 N 1.46902 * 109.47101 * 119.99805 * 2 1 3 13 13 C 1.46897 * 111.00186 * 58.95455 * 12 2 1 14 14 C 1.38585 * 110.99738 * 295.00254 * 12 2 1 15 15 N 1.31212 * 126.47478 * 73.44136 * 14 12 2 16 16 N 1.28527 * 109.86152 * 180.02562 * 15 14 12 17 17 C 1.30294 * 110.05519 * 359.97438 * 16 15 14 18 18 C 1.50700 * 126.34791 * 180.02562 * 17 16 15 19 19 H 1.08999 * 110.74903 * 176.55172 * 18 17 16 20 20 C 1.55303 * 110.84686 * 300.02197 * 18 17 16 21 21 C 1.54945 * 100.97929 * 152.50876 * 20 18 17 22 22 O 1.43694 * 105.11076 * 323.61087 * 21 20 18 23 23 C 1.43237 * 109.99324 * 24.36810 * 22 21 20 24 24 N 1.36455 * 126.47234 * 253.74635 * 14 12 2 25 25 C 1.46508 * 127.13670 * 0.02562 * 24 14 12 26 26 H 1.09006 * 115.54576 * 151.38111 * 25 24 14 27 27 C 1.52991 * 117.49836 * 5.71115 * 25 24 14 28 28 C 1.52991 * 117.49855 * 297.04887 * 25 24 14 29 29 H 1.09004 * 117.49886 * 0.02562 * 28 25 24 30 30 C 1.52994 * 117.50069 * 214.97771 * 28 25 24 31 31 F 1.39901 * 109.47464 * 180.02562 * 30 28 25 32 32 H 1.09003 * 109.47407 * 299.99945 * 1 2 3 33 33 H 1.08997 * 109.47132 * 60.00272 * 1 2 3 34 34 H 1.08998 * 109.47129 * 179.97438 * 1 2 3 35 35 H 0.97001 * 119.99449 * 179.97438 * 7 6 4 36 36 H 1.09000 * 109.47076 * 292.66090 * 13 12 2 37 37 H 1.09000 * 109.46700 * 52.65419 * 13 12 2 38 38 H 1.09001 * 109.47374 * 172.65626 * 13 12 2 39 39 H 1.08999 * 111.12583 * 270.44565 * 20 18 17 40 40 H 1.09007 * 111.12486 * 34.56867 * 20 18 17 41 41 H 1.08998 * 110.31384 * 82.49463 * 21 20 18 42 42 H 1.09012 * 110.30921 * 204.66433 * 21 20 18 43 43 H 1.09000 * 109.82658 * 238.81107 * 23 22 21 44 44 H 1.09005 * 109.90851 * 117.87794 * 23 22 21 45 45 H 1.09001 * 117.50120 * 0.02562 * 27 25 24 46 46 H 1.09006 * 117.49867 * 144.99670 * 27 25 24 47 47 H 1.08994 * 109.47304 * 300.00631 * 30 28 25 48 48 H 1.09006 * 109.46818 * 60.00436 * 30 28 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3215 -1.1204 -4.0078 9 1 1.3430 -2.1618 -4.4117 10 1 2.4867 -0.1414 -5.1122 11 1 3.6294 -1.7584 -3.7120 12 7 2.0196 -0.6925 1.1995 13 6 1.5283 -2.0761 1.2461 14 6 1.6696 -0.0022 2.3491 15 7 0.4719 0.0727 2.8797 16 7 0.5092 0.7959 3.9416 17 6 1.7230 1.2213 4.1500 18 6 2.1799 2.0948 5.2899 19 1 3.2585 2.2472 5.2513 20 6 1.4289 3.4542 5.2799 21 6 1.4722 3.8263 6.7833 22 8 1.3254 2.5794 7.4822 23 6 1.7577 1.4973 6.6493 24 7 2.5042 0.7328 3.1397 25 6 3.9401 0.9512 2.9474 26 1 4.3297 1.8901 3.3410 27 6 4.5720 0.4064 1.6650 28 6 4.8551 -0.2735 3.0069 29 1 4.3888 -1.2419 3.1887 30 6 6.2471 -0.0866 3.6136 31 9 6.9363 -1.3037 3.5835 32 1 -0.3634 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 -0.3633 -1.0276 -0.0005 35 1 0.7095 1.1617 -3.4844 36 1 0.4486 -2.0734 1.3952 37 1 1.7641 -2.5771 0.3072 38 1 2.0077 -2.6043 2.0703 39 1 1.9593 4.1915 4.6773 40 1 0.4021 3.3332 4.9344 41 1 2.4276 4.2885 7.0314 42 1 0.6503 4.4985 7.0306 43 1 0.9392 0.7920 6.5050 44 1 2.6057 0.9903 7.1097 45 1 3.9194 -0.1142 0.9641 46 1 5.3773 0.9868 1.2148 47 1 6.7979 0.6567 3.0372 48 1 6.1513 0.2516 4.6454 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001417467708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:59 Heat of formation + Delta-G solvation = 18.051405 kcal Electronic energy + Delta-G solvation = -31125.170006 eV Core-core repulsion = 26939.134439 eV Total energy + Delta-G solvation = -4186.035566 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.186 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -48.54093 -44.12388 -40.31918 -39.21745 -38.74948 -34.96236 -34.47838 -33.63429 -31.21836 -30.60497 -29.35122 -28.36849 -27.29644 -27.15685 -24.69169 -24.39050 -23.26263 -22.94856 -22.06670 -21.19762 -20.70667 -18.57803 -18.38974 -17.60853 -17.47283 -17.17408 -16.96796 -16.72019 -16.52877 -16.32474 -16.13759 -15.80522 -15.53179 -15.06515 -14.98271 -14.48017 -14.28472 -14.14460 -13.74287 -13.38249 -13.19372 -13.11668 -12.95518 -12.79218 -12.77752 -12.72967 -12.55478 -12.49495 -12.41106 -12.32194 -12.16619 -12.06051 -12.02233 -11.95803 -11.55927 -11.09121 -10.97657 -10.57332 -10.53190 -10.52357 -10.04027 -9.39907 -8.15029 -6.28211 0.60355 1.16895 1.45127 1.47017 1.56502 1.72276 2.40889 2.54285 2.76960 2.85226 3.15919 3.17471 3.41990 3.49977 3.52170 3.66359 3.73131 3.95366 3.98694 4.08076 4.13441 4.20799 4.26500 4.34591 4.38162 4.50128 4.60719 4.63566 4.70194 4.73704 4.82277 4.86889 4.88605 4.91503 4.92462 4.97053 5.03440 5.05914 5.16060 5.17564 5.36269 5.48639 5.58913 5.61898 5.79882 5.96280 5.99112 6.17187 6.56867 6.81266 7.41237 7.69026 8.91699 Molecular weight = 338.19amu Principal moments of inertia in cm(-1) A = 0.011277 B = 0.003958 C = 0.003241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2482.280587 B = 7072.312954 C = 8638.492929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.239 3.761 3 H 0.005 0.995 4 C -0.515 4.515 5 H 0.072 0.928 6 C 0.018 3.982 7 N -0.919 5.919 8 Si 0.963 3.037 9 H -0.279 1.279 10 H -0.287 1.287 11 H -0.262 1.262 12 N -0.453 5.453 13 C 0.047 3.953 14 C 0.358 3.642 15 N -0.347 5.347 16 N -0.321 5.321 17 C 0.190 3.810 18 C -0.026 4.026 19 H 0.139 0.861 20 C -0.144 4.144 21 C 0.054 3.946 22 O -0.400 6.400 23 C 0.070 3.930 24 N -0.439 5.439 25 C 0.060 3.940 26 H 0.184 0.816 27 C -0.176 4.176 28 C -0.169 4.169 29 H 0.093 0.907 30 C 0.098 3.902 31 F -0.231 7.231 32 H 0.023 0.977 33 H 0.061 0.939 34 H 0.031 0.969 35 H 0.262 0.738 36 H 0.027 0.973 37 H 0.089 0.911 38 H 0.064 0.936 39 H 0.109 0.891 40 H 0.062 0.938 41 H 0.093 0.907 42 H 0.096 0.904 43 H 0.054 0.946 44 H 0.095 0.905 45 H 0.123 0.877 46 H 0.130 0.870 47 H 0.107 0.893 48 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.768 5.213 15.990 20.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.133 3.867 3 H 0.023 0.977 4 C -0.553 4.553 5 H 0.090 0.910 6 C -0.181 4.181 7 N -0.558 5.558 8 Si 0.789 3.211 9 H -0.205 1.205 10 H -0.213 1.213 11 H -0.186 1.186 12 N -0.179 5.179 13 C -0.101 4.101 14 C 0.001 3.999 15 N -0.190 5.190 16 N -0.161 5.161 17 C -0.078 4.078 18 C -0.047 4.047 19 H 0.157 0.843 20 C -0.182 4.182 21 C -0.021 4.021 22 O -0.320 6.320 23 C -0.008 4.008 24 N -0.130 5.130 25 C -0.043 4.043 26 H 0.201 0.799 27 C -0.213 4.213 28 C -0.189 4.189 29 H 0.111 0.889 30 C 0.044 3.956 31 F -0.213 7.213 32 H 0.042 0.958 33 H 0.080 0.920 34 H 0.050 0.950 35 H 0.071 0.929 36 H 0.046 0.954 37 H 0.107 0.893 38 H 0.083 0.917 39 H 0.127 0.873 40 H 0.081 0.919 41 H 0.111 0.889 42 H 0.114 0.886 43 H 0.072 0.928 44 H 0.113 0.887 45 H 0.140 0.860 46 H 0.148 0.852 47 H 0.125 0.875 48 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 10.659 5.032 16.215 20.047 hybrid contribution -0.009 -0.415 -1.752 1.800 sum 10.651 4.617 14.463 18.545 Atomic orbital electron populations 1.22229 0.99884 0.99466 0.99939 1.19034 0.90284 0.92510 0.84876 0.97741 1.21215 1.31489 1.12957 0.89645 0.91027 1.25672 0.95012 0.95544 1.01883 1.70044 1.37404 1.24123 1.24263 0.85473 0.79032 0.78049 0.78590 1.20527 1.21276 1.18589 1.59513 1.57684 1.02914 0.97751 1.22248 0.98107 0.86733 1.02996 1.22905 0.85591 0.96833 0.94557 1.74653 1.18897 1.18883 1.06573 1.73853 1.18279 1.12323 1.11641 1.24814 0.87638 1.01742 0.93615 1.21279 1.02876 0.92456 0.88074 0.84344 1.23360 1.01213 0.94915 0.98751 1.23572 1.03637 0.86243 0.88671 1.88405 1.87177 1.15974 1.40414 1.23055 1.00008 0.89834 0.87858 1.45907 1.09695 1.37800 1.19620 1.22408 0.74866 1.00059 1.07015 0.79935 1.24192 1.03235 1.02408 0.91514 1.23342 0.97055 0.96671 1.01868 0.88852 1.21735 0.87515 0.82367 1.04015 1.92751 1.81020 1.49289 1.98192 0.95812 0.91975 0.94994 0.92857 0.95378 0.89274 0.91691 0.87258 0.91922 0.88922 0.88589 0.92766 0.88661 0.85956 0.85160 0.87525 0.87301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -8.06 8.20 71.98 0.59 -7.47 16 2 C 0.24 11.76 1.87 44.17 0.08 11.85 16 3 H 0.00 0.26 8.11 -2.39 -0.02 0.24 16 4 C -0.51 -26.20 7.84 25.60 0.20 -26.00 16 5 H 0.07 3.52 6.79 -2.91 -0.02 3.50 16 6 C 0.02 0.96 5.30 84.66 0.45 1.41 16 7 N -0.92 -51.29 11.32 21.45 0.24 -51.05 16 8 Si 0.96 41.38 29.54 68.60 2.03 43.41 16 9 H -0.28 -11.92 7.11 99.48 0.71 -11.22 16 10 H -0.29 -12.28 7.11 99.48 0.71 -11.58 16 11 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 12 N -0.45 -18.81 2.10 -711.02 -1.49 -20.31 16 13 C 0.05 1.83 8.66 127.69 1.11 2.93 16 14 C 0.36 14.41 6.05 260.11 1.57 15.99 16 15 N -0.35 -15.33 9.85 -58.00 -0.57 -15.90 16 16 N -0.32 -12.65 11.83 -49.54 -0.59 -13.24 16 17 C 0.19 5.76 6.65 137.64 0.91 6.67 16 18 C -0.03 -0.50 3.39 -10.28 -0.03 -0.54 16 19 H 0.14 1.58 7.25 -2.39 -0.02 1.56 16 20 C -0.14 -2.58 6.60 32.05 0.21 -2.37 16 21 C 0.05 0.81 7.78 72.65 0.57 1.37 16 22 O -0.40 -8.63 11.36 -148.98 -1.69 -10.32 16 23 C 0.07 1.45 7.40 72.45 0.54 1.98 16 24 N -0.44 -13.84 3.14 -492.47 -1.54 -15.38 16 25 C 0.06 1.33 6.21 44.98 0.28 1.61 16 26 H 0.18 2.31 7.61 -2.38 -0.02 2.29 16 27 C -0.18 -4.55 9.57 30.61 0.29 -4.26 16 28 C -0.17 -3.58 6.06 -10.77 -0.07 -3.65 16 29 H 0.09 2.52 8.14 -2.38 -0.02 2.50 16 30 C 0.10 1.36 7.83 71.98 0.56 1.93 16 31 F -0.23 -5.00 17.36 44.97 0.78 -4.22 16 32 H 0.02 1.22 6.06 -2.39 -0.01 1.20 16 33 H 0.06 3.51 6.07 -2.39 -0.01 3.50 16 34 H 0.03 1.60 6.55 -2.39 -0.02 1.58 16 35 H 0.26 14.00 8.31 -92.71 -0.77 13.23 16 36 H 0.03 1.17 6.44 -2.39 -0.02 1.15 16 37 H 0.09 3.50 6.33 -2.39 -0.02 3.48 16 38 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 39 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.06 1.54 8.01 -2.38 -0.02 1.52 16 41 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 42 H 0.10 1.28 8.14 -2.38 -0.02 1.26 16 43 H 0.05 1.44 7.57 -2.39 -0.02 1.43 16 44 H 0.10 1.51 8.14 -2.38 -0.02 1.49 16 45 H 0.12 4.39 4.90 -2.39 -0.01 4.38 16 46 H 0.13 2.64 8.05 -2.38 -0.02 2.62 16 47 H 0.11 0.96 7.90 -2.39 -0.02 0.94 16 48 H 0.11 0.87 8.14 -2.38 -0.02 0.85 16 Total: -1.00 -70.51 380.18 5.40 -65.11 By element: Atomic # 1 Polarization: 19.47 SS G_CDS: 0.98 Total: 20.45 kcal Atomic # 6 Polarization: -5.81 SS G_CDS: 7.27 Total: 1.45 kcal Atomic # 7 Polarization: -111.92 SS G_CDS: -3.95 Total: -115.88 kcal Atomic # 8 Polarization: -8.63 SS G_CDS: -1.69 Total: -10.32 kcal Atomic # 9 Polarization: -5.00 SS G_CDS: 0.78 Total: -4.22 kcal Atomic # 14 Polarization: 41.38 SS G_CDS: 2.03 Total: 43.41 kcal Total: -70.51 5.40 -65.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001417467708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.161 kcal (2) G-P(sol) polarization free energy of solvation -70.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.109 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds