Wall clock time and date at job start Tue Mar 31 2020 22:12:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09006 * 109.47212 * 2 1 4 4 N 1.46902 * 109.47093 * 240.00522 * 2 1 3 5 5 C 1.46896 * 111.00142 * 84.99678 * 4 2 1 6 6 C 1.50703 * 109.46944 * 180.02562 * 5 4 2 7 7 O 1.21294 * 120.00061 * 0.02562 * 6 5 4 8 8 N 1.34774 * 120.00054 * 180.02562 * 6 5 4 9 9 C 1.37100 * 120.00060 * 180.02562 * 8 6 5 10 10 H 1.07996 * 120.00223 * 359.97438 * 9 8 6 11 11 C 1.38951 * 119.99834 * 179.97438 * 9 8 6 12 12 N 1.31405 * 120.00342 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 119.99670 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47358 * 90.00096 * 13 11 9 15 15 H 1.48499 * 109.46844 * 209.99623 * 13 11 9 16 16 H 1.48495 * 109.47503 * 329.99564 * 13 11 9 17 17 C 1.52996 * 109.47469 * 119.99846 * 2 1 3 18 18 H 1.08995 * 109.47659 * 184.99566 * 17 2 1 19 19 C 1.53005 * 109.46904 * 65.00069 * 17 2 1 20 20 N 1.46499 * 109.47178 * 305.00398 * 17 2 1 21 21 C 1.34779 * 119.99734 * 204.99778 * 20 17 2 22 22 O 1.21280 * 120.00387 * 359.97438 * 21 20 17 23 23 C 1.50700 * 119.99719 * 179.97438 * 21 20 17 24 24 C 1.53005 * 109.47062 * 179.97438 * 23 21 20 25 25 N 1.46499 * 109.47396 * 179.97438 * 24 23 21 26 26 C 1.35308 * 125.86944 * 124.99861 * 25 24 23 27 27 C 1.35347 * 106.17713 * 180.02562 * 26 25 24 28 28 N 1.33774 * 106.49812 * 0.02562 * 27 26 25 29 29 N 1.28637 * 108.88333 * 0.02562 * 28 27 26 30 30 H 1.08998 * 109.47370 * 179.97438 * 1 2 3 31 31 H 1.09009 * 109.47368 * 299.99911 * 1 2 3 32 32 H 1.09002 * 109.47286 * 59.99756 * 1 2 3 33 33 H 1.00896 * 110.99502 * 321.04322 * 4 2 1 34 34 H 1.08995 * 109.47354 * 299.99695 * 5 4 2 35 35 H 1.09000 * 109.47289 * 60.00455 * 5 4 2 36 36 H 0.97002 * 119.99707 * 359.97438 * 8 6 5 37 37 H 0.97003 * 120.00562 * 179.97438 * 12 11 9 38 38 H 1.08997 * 109.47675 * 180.02562 * 19 17 2 39 39 H 1.09004 * 109.47081 * 300.00028 * 19 17 2 40 40 H 1.08997 * 109.46984 * 60.00000 * 19 17 2 41 41 H 0.96999 * 120.00320 * 24.99801 * 20 17 2 42 42 H 1.09001 * 109.47072 * 59.99955 * 23 21 20 43 43 H 1.08993 * 109.47309 * 299.99556 * 23 21 20 44 44 H 1.09001 * 109.46828 * 60.00278 * 24 23 21 45 45 H 1.08993 * 109.47081 * 300.00168 * 24 23 21 46 46 H 1.07997 * 126.91159 * 0.02959 * 26 25 24 47 47 H 1.08002 * 126.75518 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6924 -1.1995 5 6 2.0823 0.2227 -2.3469 6 6 2.5872 -0.5217 -3.5561 7 8 2.8667 -1.6988 -3.4705 8 7 2.7281 0.1206 -4.7325 9 6 3.1869 -0.5567 -5.8327 10 1 3.4358 -1.6048 -5.7566 11 6 3.3316 0.1054 -7.0457 12 7 3.0282 1.3806 -7.1386 13 14 3.9574 -0.8173 -8.5445 14 1 2.8081 -1.3995 -9.2830 15 1 4.6920 0.1200 -9.4316 16 1 4.8695 -1.9058 -8.1106 17 6 2.0400 -0.7212 1.2492 18 1 3.1263 -0.6444 1.2951 19 6 1.6352 -2.1955 1.1879 20 7 1.4558 -0.1036 2.4423 21 6 2.0913 -0.1938 3.6275 22 8 3.1464 -0.7865 3.7063 23 6 1.4907 0.4420 4.8547 24 6 2.4043 0.1938 6.0567 25 7 1.8208 0.8124 7.2496 26 6 1.5501 0.1837 8.4168 27 6 1.0233 1.1223 9.2374 28 7 0.9972 2.2642 8.5410 29 7 1.4757 2.0469 7.3669 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8901 32 1 -0.3634 0.5139 -0.8900 33 1 1.4495 -1.4978 -1.4101 34 1 1.0869 0.6164 -2.5525 35 1 2.7587 1.0463 -2.1182 36 1 2.5041 1.0620 -4.8010 37 1 3.1296 1.8429 -7.9853 38 1 1.9982 -2.7093 2.0780 39 1 0.5489 -2.2724 1.1420 40 1 2.0698 -2.6549 0.3002 41 1 0.6117 0.3701 2.3794 42 1 0.5107 0.0053 5.0475 43 1 1.3851 1.5147 4.6935 44 1 3.3844 0.6302 5.8642 45 1 2.5095 -0.8790 6.2177 46 1 1.7203 -0.8576 8.6474 47 1 0.6888 0.9777 10.2541 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733968607.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:19 Heat of formation + Delta-G solvation = 27.651886 kcal Electronic energy + Delta-G solvation = -28087.736612 eV Core-core repulsion = 23922.037316 eV Total energy + Delta-G solvation = -4165.699297 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.185 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.64885 -40.39550 -38.59930 -37.52592 -35.70208 -34.61406 -33.84763 -32.00910 -31.43706 -31.26553 -30.59563 -29.16570 -26.48360 -26.04124 -24.62310 -23.71418 -23.09080 -21.94496 -20.78559 -19.97052 -19.36385 -18.42752 -17.95693 -17.24269 -16.91333 -16.18897 -16.12276 -15.91471 -15.61413 -15.31650 -14.88531 -14.65715 -14.51658 -14.35328 -14.01290 -13.85586 -13.69729 -13.35628 -13.14148 -13.04945 -12.44628 -12.34476 -12.28282 -12.22051 -11.99853 -11.92238 -11.57968 -11.47101 -11.31592 -11.08472 -11.04646 -10.93631 -10.62897 -10.41224 -10.25483 -10.23178 -9.81526 -9.53578 -9.39150 -8.52475 -8.13850 -7.99043 -6.44315 -3.85243 1.16200 1.79854 2.18313 2.21307 2.80992 3.16036 3.25128 3.31140 3.82578 3.87207 4.03505 4.05764 4.12610 4.27769 4.33624 4.57678 4.63062 4.68136 4.71584 4.79335 4.88675 5.01604 5.06298 5.12862 5.22817 5.26760 5.28930 5.32451 5.52152 5.60238 5.67673 5.73414 5.78714 5.86229 5.92913 5.99275 6.10212 6.20941 6.24403 6.31880 7.05907 7.14825 7.52810 7.55321 7.81574 8.03369 8.09396 8.58072 9.15188 9.51154 10.02303 10.73309 Molecular weight = 338.19amu Principal moments of inertia in cm(-1) A = 0.034682 B = 0.001510 C = 0.001491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.144608 B =18544.440021 C =18781.029134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.077 3.923 3 H 0.083 0.917 4 N -0.658 5.658 5 C 0.051 3.949 6 C 0.440 3.560 7 O -0.583 6.583 8 N -0.563 5.563 9 C -0.300 4.300 10 H 0.103 0.897 11 C 0.023 3.977 12 N -0.901 5.901 13 Si 0.930 3.070 14 H -0.278 1.278 15 H -0.283 1.283 16 H -0.269 1.269 17 C 0.153 3.847 18 H 0.098 0.902 19 C -0.163 4.163 20 N -0.721 5.721 21 C 0.521 3.479 22 O -0.537 6.537 23 C -0.156 4.156 24 C 0.131 3.869 25 N -0.291 5.291 26 C -0.048 4.048 27 C -0.054 4.054 28 N -0.272 5.272 29 N -0.085 5.085 30 H 0.065 0.935 31 H 0.056 0.944 32 H 0.062 0.938 33 H 0.353 0.647 34 H 0.045 0.955 35 H 0.086 0.914 36 H 0.392 0.608 37 H 0.272 0.728 38 H 0.055 0.945 39 H 0.053 0.947 40 H 0.083 0.917 41 H 0.399 0.601 42 H 0.102 0.898 43 H 0.113 0.887 44 H 0.111 0.889 45 H 0.116 0.884 46 H 0.191 0.809 47 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.867 -0.765 27.557 28.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.034 4.034 3 H 0.101 0.899 4 N -0.291 5.291 5 C -0.081 4.081 6 C 0.225 3.775 7 O -0.467 6.467 8 N -0.199 5.199 9 C -0.430 4.430 10 H 0.121 0.879 11 C -0.179 4.179 12 N -0.543 5.543 13 Si 0.757 3.243 14 H -0.204 1.204 15 H -0.209 1.209 16 H -0.194 1.194 17 C 0.048 3.952 18 H 0.116 0.884 19 C -0.221 4.221 20 N -0.374 5.374 21 C 0.306 3.694 22 O -0.414 6.414 23 C -0.197 4.197 24 C 0.010 3.990 25 N -0.085 5.085 26 C -0.199 4.199 27 C -0.211 4.211 28 N -0.138 5.138 29 N -0.065 5.065 30 H 0.084 0.916 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.174 0.826 34 H 0.063 0.937 35 H 0.105 0.895 36 H 0.225 0.775 37 H 0.081 0.919 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.101 0.899 41 H 0.235 0.765 42 H 0.120 0.880 43 H 0.131 0.869 44 H 0.129 0.871 45 H 0.134 0.866 46 H 0.208 0.792 47 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -6.291 -0.420 26.905 27.634 hybrid contribution -1.195 -0.557 -0.628 1.460 sum -7.486 -0.977 26.277 27.340 Atomic orbital electron populations 1.22624 0.97367 1.02737 1.02118 1.21725 0.92613 0.98243 0.90829 0.89870 1.60018 1.57669 1.09123 1.02266 1.21706 0.99999 0.95668 0.90753 1.19781 0.85289 0.88249 0.84165 1.90528 1.55353 1.16246 1.84600 1.41858 1.57711 1.12431 1.07932 1.19709 1.40101 0.96451 0.86727 0.87892 1.25259 0.97593 0.95759 0.99260 1.69606 1.48624 1.08845 1.27185 0.85856 0.78883 0.78989 0.80560 1.20429 1.20909 1.19381 1.20943 0.99577 0.92488 0.82154 0.88387 1.22175 1.01104 0.95540 1.03299 1.46200 1.25868 1.56859 1.08453 1.20115 0.84855 0.80084 0.84377 1.90766 1.22306 1.42800 1.85571 1.21888 1.00626 1.04703 0.92506 1.21857 0.97391 0.99822 0.79939 1.47575 1.40727 1.07838 1.12361 1.23762 1.07000 1.02044 0.87062 1.23664 1.05729 0.89388 1.02322 1.75146 1.15843 1.24323 0.98521 1.78314 1.15259 0.97736 1.15238 0.91605 0.92530 0.91864 0.82627 0.93736 0.89535 0.77473 0.91855 0.92592 0.92845 0.89858 0.76505 0.87986 0.86893 0.87079 0.86551 0.79155 0.79313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.57 8.68 37.15 0.32 -1.24 16 2 C 0.08 0.81 2.64 -67.72 -0.18 0.63 16 3 H 0.08 0.86 7.80 -51.93 -0.40 0.46 16 4 N -0.66 -9.57 5.23 -108.00 -0.56 -10.13 16 5 C 0.05 0.84 5.97 -4.98 -0.03 0.81 16 6 C 0.44 10.06 7.82 -10.99 -0.09 9.98 16 7 O -0.58 -15.43 15.78 5.55 0.09 -15.35 16 8 N -0.56 -13.97 5.29 -10.96 -0.06 -14.03 16 9 C -0.30 -8.28 9.68 -14.93 -0.14 -8.43 16 10 H 0.10 2.98 7.16 -52.49 -0.38 2.61 16 11 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 12 N -0.90 -24.23 13.05 55.50 0.72 -23.51 16 13 Si 0.93 20.86 29.55 -169.99 -5.02 15.83 16 14 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 15 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 16 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 17 C 0.15 1.57 2.63 -67.93 -0.18 1.39 16 18 H 0.10 1.28 7.58 -51.93 -0.39 0.89 16 19 C -0.16 -1.70 8.86 37.16 0.33 -1.37 16 20 N -0.72 -5.42 4.99 -53.81 -0.27 -5.69 16 21 C 0.52 4.27 7.79 -10.98 -0.09 4.18 16 22 O -0.54 -6.43 15.65 5.56 0.09 -6.35 16 23 C -0.16 -0.82 5.82 -27.88 -0.16 -0.98 16 24 C 0.13 0.72 5.74 -4.04 -0.02 0.69 16 25 N -0.29 -2.07 3.44 -61.26 -0.21 -2.29 16 26 C -0.05 -0.26 11.57 -17.05 -0.20 -0.45 16 27 C -0.05 -0.37 12.05 -17.74 -0.21 -0.58 16 28 N -0.27 -2.90 12.41 30.24 0.38 -2.52 16 29 N -0.09 -0.87 12.91 60.35 0.78 -0.09 16 30 H 0.06 0.55 6.55 -51.93 -0.34 0.21 16 31 H 0.06 0.33 6.29 -51.92 -0.33 0.01 16 32 H 0.06 0.57 7.45 -51.93 -0.39 0.19 16 33 H 0.35 5.32 7.39 -39.29 -0.29 5.03 16 34 H 0.04 0.65 7.44 -51.93 -0.39 0.26 16 35 H 0.09 1.33 8.06 -51.93 -0.42 0.91 16 36 H 0.39 9.29 7.90 -40.82 -0.32 8.97 16 37 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 38 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.05 0.48 6.57 -51.93 -0.34 0.14 16 40 H 0.08 1.02 7.13 -51.93 -0.37 0.65 16 41 H 0.40 2.05 6.58 -40.82 -0.27 1.78 16 42 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.11 0.58 8.12 -51.93 -0.42 0.16 16 44 H 0.11 0.67 8.10 -51.93 -0.42 0.25 16 45 H 0.12 0.46 8.03 -51.93 -0.42 0.04 16 46 H 0.19 0.28 8.06 -52.49 -0.42 -0.14 16 47 H 0.19 0.67 8.06 -52.49 -0.42 0.25 16 LS Contribution 393.20 15.07 5.93 5.93 Total: -1.00 -35.30 393.20 -5.60 -40.90 By element: Atomic # 1 Polarization: 18.86 SS G_CDS: -6.71 Total: 12.15 kcal Atomic # 6 Polarization: 5.89 SS G_CDS: -0.74 Total: 5.14 kcal Atomic # 7 Polarization: -59.04 SS G_CDS: 0.78 Total: -58.26 kcal Atomic # 8 Polarization: -21.87 SS G_CDS: 0.17 Total: -21.69 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -35.30 -5.60 -40.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733968607.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.556 kcal (2) G-P(sol) polarization free energy of solvation -35.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds