Wall clock time and date at job start Tue Mar 31 2020 22:12:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09006 * 109.47212 * 2 1 4 4 N 1.46902 * 109.47093 * 240.00522 * 2 1 3 5 5 C 1.46896 * 111.00142 * 84.99678 * 4 2 1 6 6 C 1.50703 * 109.46944 * 180.02562 * 5 4 2 7 7 O 1.21294 * 120.00061 * 0.02562 * 6 5 4 8 8 N 1.34774 * 120.00054 * 180.02562 * 6 5 4 9 9 C 1.37100 * 120.00060 * 180.02562 * 8 6 5 10 10 H 1.07996 * 120.00223 * 359.97438 * 9 8 6 11 11 C 1.38951 * 119.99834 * 179.97438 * 9 8 6 12 12 N 1.31405 * 120.00342 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 119.99670 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47358 * 90.00096 * 13 11 9 15 15 H 1.48499 * 109.46844 * 209.99623 * 13 11 9 16 16 H 1.48495 * 109.47503 * 329.99564 * 13 11 9 17 17 C 1.52996 * 109.47469 * 119.99846 * 2 1 3 18 18 H 1.08995 * 109.47659 * 184.99566 * 17 2 1 19 19 C 1.53005 * 109.46904 * 65.00069 * 17 2 1 20 20 N 1.46499 * 109.47178 * 305.00398 * 17 2 1 21 21 C 1.34779 * 119.99734 * 204.99778 * 20 17 2 22 22 O 1.21280 * 120.00387 * 359.97438 * 21 20 17 23 23 C 1.50700 * 119.99719 * 179.97438 * 21 20 17 24 24 C 1.53005 * 109.47062 * 179.97438 * 23 21 20 25 25 N 1.46499 * 109.47396 * 179.97438 * 24 23 21 26 26 C 1.35308 * 125.86944 * 124.99861 * 25 24 23 27 27 C 1.35347 * 106.17713 * 180.02562 * 26 25 24 28 28 N 1.33774 * 106.49812 * 0.02562 * 27 26 25 29 29 N 1.28637 * 108.88333 * 0.02562 * 28 27 26 30 30 H 1.08998 * 109.47370 * 179.97438 * 1 2 3 31 31 H 1.09009 * 109.47368 * 299.99911 * 1 2 3 32 32 H 1.09002 * 109.47286 * 59.99756 * 1 2 3 33 33 H 1.00896 * 110.99502 * 321.04322 * 4 2 1 34 34 H 1.08995 * 109.47354 * 299.99695 * 5 4 2 35 35 H 1.09000 * 109.47289 * 60.00455 * 5 4 2 36 36 H 0.97002 * 119.99707 * 359.97438 * 8 6 5 37 37 H 0.97003 * 120.00562 * 179.97438 * 12 11 9 38 38 H 1.08997 * 109.47675 * 180.02562 * 19 17 2 39 39 H 1.09004 * 109.47081 * 300.00028 * 19 17 2 40 40 H 1.08997 * 109.46984 * 60.00000 * 19 17 2 41 41 H 0.96999 * 120.00320 * 24.99801 * 20 17 2 42 42 H 1.09001 * 109.47072 * 59.99955 * 23 21 20 43 43 H 1.08993 * 109.47309 * 299.99556 * 23 21 20 44 44 H 1.09001 * 109.46828 * 60.00278 * 24 23 21 45 45 H 1.08993 * 109.47081 * 300.00168 * 24 23 21 46 46 H 1.07997 * 126.91159 * 0.02959 * 26 25 24 47 47 H 1.08002 * 126.75518 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6924 -1.1995 5 6 2.0823 0.2227 -2.3469 6 6 2.5872 -0.5217 -3.5561 7 8 2.8667 -1.6988 -3.4705 8 7 2.7281 0.1206 -4.7325 9 6 3.1869 -0.5567 -5.8327 10 1 3.4358 -1.6048 -5.7566 11 6 3.3316 0.1054 -7.0457 12 7 3.0282 1.3806 -7.1386 13 14 3.9574 -0.8173 -8.5445 14 1 2.8081 -1.3995 -9.2830 15 1 4.6920 0.1200 -9.4316 16 1 4.8695 -1.9058 -8.1106 17 6 2.0400 -0.7212 1.2492 18 1 3.1263 -0.6444 1.2951 19 6 1.6352 -2.1955 1.1879 20 7 1.4558 -0.1036 2.4423 21 6 2.0913 -0.1938 3.6275 22 8 3.1464 -0.7865 3.7063 23 6 1.4907 0.4420 4.8547 24 6 2.4043 0.1938 6.0567 25 7 1.8208 0.8124 7.2496 26 6 1.5501 0.1837 8.4168 27 6 1.0233 1.1223 9.2374 28 7 0.9972 2.2642 8.5410 29 7 1.4757 2.0469 7.3669 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8901 32 1 -0.3634 0.5139 -0.8900 33 1 1.4495 -1.4978 -1.4101 34 1 1.0869 0.6164 -2.5525 35 1 2.7587 1.0463 -2.1182 36 1 2.5041 1.0620 -4.8010 37 1 3.1296 1.8429 -7.9853 38 1 1.9982 -2.7093 2.0780 39 1 0.5489 -2.2724 1.1420 40 1 2.0698 -2.6549 0.3002 41 1 0.6117 0.3701 2.3794 42 1 0.5107 0.0053 5.0475 43 1 1.3851 1.5147 4.6935 44 1 3.3844 0.6302 5.8642 45 1 2.5095 -0.8790 6.2177 46 1 1.7203 -0.8576 8.6474 47 1 0.6888 0.9777 10.2541 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733968607.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:15 Heat of formation + Delta-G solvation = -1.122577 kcal Electronic energy + Delta-G solvation = -28088.984367 eV Core-core repulsion = 23922.037316 eV Total energy + Delta-G solvation = -4166.947051 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.185 amu Computer time = 3.12 seconds Orbital eigenvalues (eV) -44.17050 -41.13906 -40.18849 -38.66447 -36.27979 -36.02540 -35.36324 -33.28759 -32.69324 -31.94089 -31.41832 -29.99405 -27.99345 -26.63620 -25.99634 -24.87058 -23.58783 -22.52826 -21.43658 -21.15710 -20.78509 -19.93090 -18.96614 -18.06444 -17.52569 -17.44114 -17.03034 -16.73574 -16.67977 -16.38519 -16.02198 -15.76228 -15.64317 -15.24781 -15.19781 -14.92959 -14.68568 -14.32181 -14.08896 -13.80235 -13.63139 -13.49289 -13.32271 -13.14924 -13.05459 -12.87230 -12.80686 -12.56382 -12.42222 -12.41495 -12.12724 -11.87756 -11.84751 -11.81492 -11.50253 -11.21328 -10.95172 -10.36398 -10.31184 -10.12386 -10.01102 -9.31037 -8.46647 -5.95217 0.67483 1.33293 1.37930 1.42066 1.54523 1.56026 1.65541 2.05983 2.13142 2.30618 2.99285 3.20963 3.40086 3.54757 3.61710 3.68700 3.79541 3.84438 3.93554 4.22697 4.25036 4.28637 4.30057 4.35767 4.46294 4.46600 4.48619 4.55854 4.62576 4.66039 4.75218 4.86735 4.89768 4.97090 5.04363 5.23548 5.30525 5.41168 5.42659 5.50025 5.65607 5.89082 6.09844 6.41051 6.49377 6.60439 7.13041 7.19499 7.54337 7.56866 8.12220 8.70596 Molecular weight = 338.19amu Principal moments of inertia in cm(-1) A = 0.034682 B = 0.001510 C = 0.001491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.144608 B =18544.440021 C =18781.029134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.082 3.918 3 H 0.089 0.911 4 N -0.675 5.675 5 C 0.068 3.932 6 C 0.437 3.563 7 O -0.623 6.623 8 N -0.573 5.573 9 C -0.335 4.335 10 H 0.078 0.922 11 C -0.011 4.011 12 N -0.920 5.920 13 Si 0.992 3.008 14 H -0.270 1.270 15 H -0.271 1.271 16 H -0.274 1.274 17 C 0.161 3.839 18 H 0.066 0.934 19 C -0.156 4.156 20 N -0.709 5.709 21 C 0.522 3.478 22 O -0.578 6.578 23 C -0.142 4.142 24 C 0.130 3.870 25 N -0.289 5.289 26 C -0.033 4.033 27 C -0.066 4.066 28 N -0.314 5.314 29 N -0.124 5.124 30 H 0.066 0.934 31 H 0.086 0.914 32 H 0.059 0.941 33 H 0.349 0.651 34 H 0.071 0.929 35 H 0.102 0.898 36 H 0.396 0.604 37 H 0.277 0.723 38 H 0.048 0.952 39 H 0.072 0.928 40 H 0.060 0.940 41 H 0.414 0.586 42 H 0.124 0.876 43 H 0.116 0.884 44 H 0.101 0.899 45 H 0.135 0.865 46 H 0.232 0.768 47 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.251 -0.763 28.702 30.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.029 4.029 3 H 0.107 0.893 4 N -0.308 5.308 5 C -0.065 4.065 6 C 0.224 3.776 7 O -0.510 6.510 8 N -0.210 5.210 9 C -0.464 4.464 10 H 0.096 0.904 11 C -0.211 4.211 12 N -0.560 5.560 13 Si 0.815 3.185 14 H -0.195 1.195 15 H -0.196 1.196 16 H -0.199 1.199 17 C 0.055 3.945 18 H 0.084 0.916 19 C -0.214 4.214 20 N -0.363 5.363 21 C 0.309 3.691 22 O -0.457 6.457 23 C -0.183 4.183 24 C 0.009 3.991 25 N -0.083 5.083 26 C -0.185 4.185 27 C -0.223 4.223 28 N -0.179 5.179 29 N -0.103 5.103 30 H 0.085 0.915 31 H 0.105 0.895 32 H 0.078 0.922 33 H 0.169 0.831 34 H 0.089 0.911 35 H 0.120 0.880 36 H 0.230 0.770 37 H 0.087 0.913 38 H 0.067 0.933 39 H 0.091 0.909 40 H 0.079 0.921 41 H 0.253 0.747 42 H 0.142 0.858 43 H 0.134 0.866 44 H 0.119 0.881 45 H 0.153 0.847 46 H 0.249 0.751 47 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -7.716 -0.357 28.058 29.102 hybrid contribution -0.748 -0.618 -0.880 1.310 sum -8.464 -0.975 27.178 28.482 Atomic orbital electron populations 1.22562 0.95025 1.03261 1.03436 1.21733 0.94391 0.97868 0.88862 0.89320 1.59964 1.58862 1.09217 1.02750 1.21536 1.01265 0.95198 0.88472 1.20919 0.83434 0.88035 0.85183 1.90497 1.56639 1.18365 1.85463 1.41927 1.58336 1.12585 1.08193 1.19667 1.42260 0.95958 0.88557 0.90354 1.26006 0.97203 0.96587 1.01329 1.69663 1.48646 1.09637 1.28099 0.84947 0.78443 0.77824 0.77250 1.19546 1.19621 1.19905 1.20631 0.97923 0.92703 0.83234 0.91603 1.22084 1.02139 0.95362 1.01819 1.46015 1.26278 1.56501 1.07467 1.20581 0.84177 0.79281 0.85073 1.90758 1.24160 1.44662 1.86168 1.21784 1.01177 1.04604 0.90719 1.21947 0.96840 1.00620 0.79704 1.47708 1.40099 1.07337 1.13163 1.24444 1.04828 1.03448 0.85759 1.24250 1.05788 0.88705 1.03595 1.75085 1.17097 1.26424 0.99321 1.78260 1.17168 0.99296 1.15615 0.91493 0.89548 0.92216 0.83111 0.91096 0.88030 0.76967 0.91323 0.93336 0.90873 0.92074 0.74694 0.85825 0.86585 0.88110 0.84672 0.75123 0.76723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.50 8.68 71.98 0.62 -1.88 16 2 C 0.08 1.57 2.64 44.91 0.12 1.69 16 3 H 0.09 1.64 7.80 -2.38 -0.02 1.62 16 4 N -0.67 -19.23 5.23 -495.60 -2.59 -21.83 16 5 C 0.07 2.16 5.97 85.56 0.51 2.67 16 6 C 0.44 20.24 7.82 87.66 0.69 20.93 16 7 O -0.62 -33.94 15.78 -3.07 -0.05 -33.99 16 8 N -0.57 -28.93 5.29 -306.98 -1.62 -30.56 16 9 C -0.33 -18.89 9.68 84.04 0.81 -18.08 16 10 H 0.08 4.72 7.16 -2.91 -0.02 4.70 16 11 C -0.01 -0.60 5.50 84.93 0.47 -0.14 16 12 N -0.92 -49.15 13.05 21.66 0.28 -48.87 16 13 Si 0.99 42.70 29.55 68.60 2.03 44.73 16 14 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 15 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 16 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 17 C 0.16 3.16 2.63 44.99 0.12 3.28 16 18 H 0.07 1.76 7.58 -2.39 -0.02 1.74 16 19 C -0.16 -3.16 8.86 71.98 0.64 -2.52 16 20 N -0.71 -9.26 4.99 -442.54 -2.21 -11.47 16 21 C 0.52 7.81 7.79 87.66 0.68 8.49 16 22 O -0.58 -13.61 15.65 -3.03 -0.05 -13.66 16 23 C -0.14 -1.19 5.82 29.85 0.17 -1.02 16 24 C 0.13 1.20 5.74 86.38 0.50 1.70 16 25 N -0.29 -3.64 3.44 -347.74 -1.20 -4.83 16 26 C -0.03 -0.27 11.57 83.49 0.97 0.69 16 27 C -0.07 -0.79 12.05 83.73 1.01 0.22 16 28 N -0.31 -6.53 12.41 -58.26 -0.72 -7.26 16 29 N -0.12 -2.46 12.91 37.02 0.48 -1.99 16 30 H 0.07 0.93 6.55 -2.39 -0.02 0.91 16 31 H 0.09 0.66 6.29 -2.38 -0.01 0.65 16 32 H 0.06 0.90 7.45 -2.39 -0.02 0.88 16 33 H 0.35 10.43 7.39 -89.70 -0.66 9.77 16 34 H 0.07 1.92 7.44 -2.39 -0.02 1.90 16 35 H 0.10 2.97 8.06 -2.39 -0.02 2.95 16 36 H 0.40 18.93 7.90 -92.71 -0.73 18.20 16 37 H 0.28 13.89 8.31 -92.71 -0.77 13.12 16 38 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.07 1.17 6.57 -2.38 -0.02 1.15 16 40 H 0.06 1.52 7.13 -2.39 -0.02 1.50 16 41 H 0.41 2.91 6.58 -92.71 -0.61 2.30 16 42 H 0.12 0.55 8.14 -2.39 -0.02 0.53 16 43 H 0.12 0.98 8.12 -2.39 -0.02 0.96 16 44 H 0.10 1.17 8.10 -2.39 -0.02 1.15 16 45 H 0.14 0.74 8.03 -2.39 -0.02 0.72 16 46 H 0.23 -0.29 8.06 -2.91 -0.02 -0.31 16 47 H 0.22 1.05 8.06 -2.91 -0.02 1.03 16 Total: -1.00 -79.98 393.20 0.68 -79.30 By element: Atomic # 1 Polarization: 35.36 SS G_CDS: -0.97 Total: 34.39 kcal Atomic # 6 Polarization: 8.73 SS G_CDS: 7.30 Total: 16.03 kcal Atomic # 7 Polarization: -119.22 SS G_CDS: -7.58 Total: -126.80 kcal Atomic # 8 Polarization: -47.55 SS G_CDS: -0.10 Total: -47.65 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.73 kcal Total: -79.98 0.68 -79.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733968607.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.178 kcal (2) G-P(sol) polarization free energy of solvation -79.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.12 seconds