Wall clock time and date at job start Tue Mar 31 2020 22:16:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 5 5 N 1.46901 * 109.47509 * 175.00152 * 4 2 1 6 6 C 1.46897 * 111.00075 * 180.02562 * 5 4 2 7 7 C 1.50699 * 109.47342 * 180.02562 * 6 5 4 8 8 O 1.21298 * 119.99673 * 359.97438 * 7 6 5 9 9 N 1.34772 * 120.00217 * 180.02562 * 7 6 5 10 10 C 1.37095 * 119.99970 * 179.97438 * 9 7 6 11 11 H 1.07999 * 120.00376 * 0.02562 * 10 9 7 12 12 C 1.38954 * 120.00443 * 179.97438 * 10 9 7 13 13 N 1.31404 * 120.00389 * 180.02562 * 12 10 9 14 14 Si 1.86806 * 119.99442 * 0.02562 * 12 10 9 15 15 H 1.48499 * 109.46879 * 89.99885 * 14 12 10 16 16 H 1.48497 * 109.46917 * 209.99828 * 14 12 10 17 17 H 1.48490 * 109.47300 * 329.99819 * 14 12 10 18 18 N 1.46500 * 109.47473 * 239.99757 * 2 1 3 19 19 C 1.46500 * 119.99929 * 300.00372 * 18 2 1 20 20 C 1.34781 * 119.99819 * 120.00094 * 18 2 1 21 21 O 1.21274 * 119.99737 * 359.97438 * 20 18 2 22 22 C 1.50697 * 119.99418 * 180.02562 * 20 18 2 23 23 C 1.53007 * 109.46726 * 179.97438 * 22 20 18 24 24 N 1.46500 * 109.47127 * 179.97438 * 23 22 20 25 25 C 1.35318 * 125.86773 * 124.99849 * 24 23 22 26 26 C 1.35351 * 106.17470 * 180.02562 * 25 24 23 27 27 N 1.33766 * 106.49554 * 359.97438 * 26 25 24 28 28 N 1.28629 * 108.89019 * 359.74000 * 27 26 25 29 29 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 31 31 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 32 32 H 1.09001 * 109.47317 * 295.00638 * 4 2 1 33 33 H 1.09006 * 109.47194 * 55.00274 * 4 2 1 34 34 H 1.00899 * 110.99754 * 56.04975 * 5 4 2 35 35 H 1.09001 * 109.46958 * 299.99902 * 6 5 4 36 36 H 1.09004 * 109.47788 * 59.99447 * 6 5 4 37 37 H 0.96997 * 120.00108 * 359.97438 * 9 7 6 38 38 H 0.96999 * 120.00048 * 180.02562 * 13 12 10 39 39 H 1.08994 * 109.47032 * 89.99688 * 19 18 2 40 40 H 1.08998 * 109.46624 * 209.99482 * 19 18 2 41 41 H 1.08998 * 109.46783 * 329.99227 * 19 18 2 42 42 H 1.09000 * 109.47403 * 299.99392 * 22 20 18 43 43 H 1.09000 * 109.48021 * 60.00086 * 22 20 18 44 44 H 1.08995 * 109.47282 * 299.99771 * 23 22 20 45 45 H 1.09002 * 109.46859 * 59.99920 * 23 22 20 46 46 H 1.07998 * 126.90883 * 359.97438 * 25 24 23 47 47 H 1.08003 * 126.74375 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5041 -0.8266 1.1905 6 6 4.0303 -1.5157 2.3763 7 6 5.5316 -1.6042 2.2810 8 8 6.1067 -1.1393 1.3194 9 7 6.2353 -2.2007 3.2635 10 6 7.6011 -2.2816 3.1765 11 1 8.1132 -1.8670 2.3208 12 6 8.3267 -2.8962 4.1897 13 7 9.6358 -2.9733 4.1065 14 14 7.4410 -3.6128 5.6701 15 1 7.0919 -5.0306 5.3994 16 1 8.3265 -3.5395 6.8599 17 1 6.2007 -2.8381 5.9276 18 7 2.0184 -0.6906 -1.1961 19 6 1.6645 -2.0932 -1.4279 20 6 2.7933 -0.0356 -2.0833 21 8 3.0858 1.1256 -1.8915 22 6 3.2952 -0.7460 -3.3139 23 6 4.1448 0.2159 -4.1470 24 7 4.6333 -0.4748 -5.3431 25 6 4.4604 -0.0654 -6.6212 26 6 5.0667 -0.9922 -7.3993 27 7 5.5746 -1.9108 -6.5701 28 7 5.3057 -1.5722 -5.3586 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 0.5139 0.8900 32 1 1.7516 -0.1583 2.1370 33 1 1.6054 -1.7198 1.2952 34 1 3.9280 0.0827 1.0825 35 1 3.7557 -0.9586 3.2720 36 1 3.6094 -2.5198 2.4297 37 1 5.7754 -2.5728 4.0322 38 1 10.1423 -3.4027 4.8136 39 1 0.7377 -2.1444 -1.9993 40 1 2.4629 -2.5818 -1.9863 41 1 1.5296 -2.5968 -0.4707 42 1 3.9006 -1.6025 -3.0175 43 1 2.4473 -1.0882 -3.9072 44 1 3.5391 1.0722 -4.4434 45 1 4.9928 0.5585 -3.5539 46 1 3.9421 0.8219 -6.9535 47 1 5.1281 -0.9903 -8.4776 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753685169.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:05 Heat of formation + Delta-G solvation = 43.723588 kcal Electronic energy + Delta-G solvation = -29219.183424 eV Core-core repulsion = 25054.181048 eV Total energy + Delta-G solvation = -4165.002375 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.185 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.37219 -40.28861 -38.48679 -37.14443 -35.38047 -34.82490 -33.85313 -32.28854 -31.63813 -31.19073 -30.68059 -27.79879 -27.08986 -25.77377 -24.96230 -23.15763 -22.83532 -22.01744 -21.04428 -19.45987 -19.14540 -18.31262 -18.18804 -16.99607 -16.73669 -16.40555 -16.10445 -15.73230 -15.29505 -15.17217 -14.91163 -14.63162 -14.28783 -14.22465 -13.96285 -13.75652 -13.25439 -13.19039 -13.03376 -12.98599 -12.72261 -12.52857 -12.35082 -12.22679 -12.10110 -11.98371 -11.70925 -11.65491 -11.56210 -11.16083 -11.04325 -11.02414 -10.59789 -10.33026 -9.96724 -9.93955 -9.56486 -9.54970 -8.81224 -8.56625 -8.19571 -8.14775 -6.29841 -3.81323 1.44471 2.08067 2.45504 2.49311 2.87285 3.01885 3.06587 3.14764 3.74564 3.99673 4.10742 4.13529 4.30522 4.31991 4.49631 4.69723 4.81162 4.82429 4.86382 4.91115 4.96305 5.04242 5.09789 5.20244 5.21921 5.29258 5.33043 5.37816 5.39458 5.43143 5.59182 5.60667 5.67095 5.74877 5.78727 5.86696 5.92344 5.99276 6.35738 6.38065 7.05008 7.20802 7.52769 7.59176 8.01119 8.15868 8.38605 8.60807 8.96381 9.43407 9.83803 10.83386 Molecular weight = 338.19amu Principal moments of inertia in cm(-1) A = 0.009562 B = 0.002757 C = 0.002244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2927.565720 B =10153.948378 C =12474.856106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.138 3.862 3 H 0.102 0.898 4 C 0.046 3.954 5 N -0.663 5.663 6 C 0.049 3.951 7 C 0.449 3.551 8 O -0.562 6.562 9 N -0.591 5.591 10 C -0.304 4.304 11 H 0.119 0.881 12 C 0.041 3.959 13 N -0.881 5.881 14 Si 0.880 3.120 15 H -0.271 1.271 16 H -0.277 1.277 17 H -0.270 1.270 18 N -0.589 5.589 19 C 0.080 3.920 20 C 0.532 3.468 21 O -0.545 6.545 22 C -0.152 4.152 23 C 0.131 3.869 24 N -0.289 5.289 25 C -0.052 4.052 26 C -0.056 4.056 27 N -0.274 5.274 28 N -0.077 5.077 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.068 0.932 32 H 0.039 0.961 33 H 0.074 0.926 34 H 0.352 0.648 35 H 0.043 0.957 36 H 0.085 0.915 37 H 0.370 0.630 38 H 0.273 0.727 39 H 0.051 0.949 40 H 0.074 0.926 41 H 0.076 0.924 42 H 0.117 0.883 43 H 0.097 0.903 44 H 0.113 0.887 45 H 0.113 0.887 46 H 0.189 0.811 47 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.441 5.256 -13.763 27.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.034 3.966 3 H 0.120 0.880 4 C -0.084 4.084 5 N -0.296 5.296 6 C -0.084 4.084 7 C 0.235 3.765 8 O -0.443 6.443 9 N -0.231 5.231 10 C -0.433 4.433 11 H 0.137 0.863 12 C -0.162 4.162 13 N -0.521 5.521 14 Si 0.707 3.293 15 H -0.196 1.196 16 H -0.202 1.202 17 H -0.196 1.196 18 N -0.321 5.321 19 C -0.063 4.063 20 C 0.319 3.681 21 O -0.422 6.422 22 C -0.193 4.193 23 C 0.009 3.991 24 N -0.083 5.083 25 C -0.203 4.203 26 C -0.213 4.213 27 N -0.140 5.140 28 N -0.058 5.058 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.057 0.943 33 H 0.092 0.908 34 H 0.172 0.828 35 H 0.061 0.939 36 H 0.103 0.897 37 H 0.202 0.798 38 H 0.084 0.916 39 H 0.070 0.930 40 H 0.092 0.908 41 H 0.094 0.906 42 H 0.135 0.865 43 H 0.116 0.884 44 H 0.131 0.869 45 H 0.132 0.868 46 H 0.206 0.794 47 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -22.054 4.432 -13.724 26.350 hybrid contribution -1.197 0.804 1.474 2.062 sum -23.250 5.236 -12.249 26.796 Atomic orbital electron populations 1.22080 0.94485 1.02481 1.02573 1.21112 0.93582 0.98067 0.83861 0.88041 1.22368 0.89632 1.00561 0.95872 1.60007 1.03081 1.27033 1.39484 1.21697 0.95110 0.99901 0.91658 1.19701 0.87929 0.84137 0.84768 1.90585 1.70957 1.50285 1.32481 1.42203 1.07873 1.53114 1.19883 1.19431 0.79555 1.35928 1.08400 0.86299 1.25041 0.95433 0.97686 0.98027 1.69620 1.05070 1.43297 1.34131 0.86667 0.79585 0.80005 0.83079 1.19607 1.20196 1.19603 1.47473 1.50327 1.12303 1.22008 1.21751 1.00318 0.81550 1.02686 1.20001 0.77589 0.86581 0.83889 1.90707 1.57481 1.17071 1.76988 1.21875 1.01378 1.00642 0.95373 1.21880 1.00587 0.93879 0.82722 1.47608 1.35367 1.17466 1.07846 1.23712 1.08313 1.04439 0.83847 1.23637 1.02620 0.93498 1.01554 1.75161 1.19395 1.23906 0.95489 1.78407 1.10793 0.99777 1.16786 0.92116 0.92085 0.91302 0.94313 0.90757 0.82773 0.93906 0.89652 0.79765 0.91613 0.92997 0.90762 0.90571 0.86477 0.88432 0.86870 0.86844 0.79356 0.79464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.06 9.19 37.16 0.34 -0.72 16 2 C 0.14 1.32 2.88 -67.93 -0.20 1.13 16 3 H 0.10 1.18 6.90 -51.93 -0.36 0.82 16 4 C 0.05 0.48 4.93 -3.82 -0.02 0.46 16 5 N -0.66 -9.91 5.85 -115.06 -0.67 -10.58 16 6 C 0.05 0.79 6.17 -4.98 -0.03 0.76 16 7 C 0.45 10.23 7.82 -10.99 -0.09 10.15 16 8 O -0.56 -15.29 15.78 5.54 0.09 -15.21 16 9 N -0.59 -14.19 5.09 -10.96 -0.06 -14.24 16 10 C -0.30 -8.73 10.16 -14.93 -0.15 -8.88 16 11 H 0.12 3.92 7.39 -52.49 -0.39 3.53 16 12 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 13 N -0.88 -26.09 13.96 55.50 0.77 -25.32 16 14 Si 0.88 19.50 27.74 -169.99 -4.71 14.78 16 15 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 16 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 17 H -0.27 -5.44 6.52 56.52 0.37 -5.07 16 18 N -0.59 -5.89 2.49 -173.94 -0.43 -6.33 16 19 C 0.08 0.62 9.30 59.85 0.56 1.17 16 20 C 0.53 6.17 7.67 -10.98 -0.08 6.08 16 21 O -0.54 -7.94 15.31 5.56 0.09 -7.86 16 22 C -0.15 -1.43 4.38 -27.88 -0.12 -1.55 16 23 C 0.13 1.22 5.74 -4.04 -0.02 1.20 16 24 N -0.29 -3.10 3.44 -61.26 -0.21 -3.31 16 25 C -0.05 -0.43 11.57 -17.04 -0.20 -0.62 16 26 C -0.06 -0.54 12.05 -17.74 -0.21 -0.75 16 27 N -0.27 -3.84 12.41 30.23 0.38 -3.47 16 28 N -0.08 -1.11 12.92 60.35 0.78 -0.33 16 29 H 0.06 0.35 7.67 -51.93 -0.40 -0.04 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.69 6.88 -51.93 -0.36 0.33 16 34 H 0.35 5.96 8.43 -39.29 -0.33 5.62 16 35 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.37 7.76 5.76 -40.82 -0.24 7.52 16 38 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 39 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 40 H 0.07 0.60 6.44 -51.93 -0.33 0.26 16 41 H 0.08 0.58 6.53 -51.93 -0.34 0.24 16 42 H 0.12 1.28 7.38 -51.93 -0.38 0.90 16 43 H 0.10 0.70 8.11 -51.93 -0.42 0.28 16 44 H 0.11 0.79 8.03 -51.93 -0.42 0.37 16 45 H 0.11 1.26 8.10 -51.93 -0.42 0.84 16 46 H 0.19 0.74 8.06 -52.49 -0.42 0.31 16 47 H 0.19 1.13 8.06 -52.48 -0.42 0.70 16 LS Contribution 393.97 15.07 5.94 5.94 Total: -1.00 -37.87 393.97 -5.30 -43.17 By element: Atomic # 1 Polarization: 20.22 SS G_CDS: -6.93 Total: 13.28 kcal Atomic # 6 Polarization: 9.79 SS G_CDS: -0.32 Total: 9.47 kcal Atomic # 7 Polarization: -64.14 SS G_CDS: 0.56 Total: -63.58 kcal Atomic # 8 Polarization: -23.24 SS G_CDS: 0.17 Total: -23.06 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -4.71 Total: 14.78 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -37.87 -5.30 -43.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753685169.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.894 kcal (2) G-P(sol) polarization free energy of solvation -37.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds