Wall clock time and date at job start Tue Mar 31 2020 22:16:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 5 5 N 1.46901 * 109.47509 * 175.00152 * 4 2 1 6 6 C 1.46897 * 111.00075 * 180.02562 * 5 4 2 7 7 C 1.50699 * 109.47342 * 180.02562 * 6 5 4 8 8 O 1.21298 * 119.99673 * 359.97438 * 7 6 5 9 9 N 1.34772 * 120.00217 * 180.02562 * 7 6 5 10 10 C 1.37095 * 119.99970 * 179.97438 * 9 7 6 11 11 H 1.07999 * 120.00376 * 0.02562 * 10 9 7 12 12 C 1.38954 * 120.00443 * 179.97438 * 10 9 7 13 13 N 1.31404 * 120.00389 * 180.02562 * 12 10 9 14 14 Si 1.86806 * 119.99442 * 0.02562 * 12 10 9 15 15 H 1.48499 * 109.46879 * 89.99885 * 14 12 10 16 16 H 1.48497 * 109.46917 * 209.99828 * 14 12 10 17 17 H 1.48490 * 109.47300 * 329.99819 * 14 12 10 18 18 N 1.46500 * 109.47473 * 239.99757 * 2 1 3 19 19 C 1.46500 * 119.99929 * 300.00372 * 18 2 1 20 20 C 1.34781 * 119.99819 * 120.00094 * 18 2 1 21 21 O 1.21274 * 119.99737 * 359.97438 * 20 18 2 22 22 C 1.50697 * 119.99418 * 180.02562 * 20 18 2 23 23 C 1.53007 * 109.46726 * 179.97438 * 22 20 18 24 24 N 1.46500 * 109.47127 * 179.97438 * 23 22 20 25 25 C 1.35318 * 125.86773 * 124.99849 * 24 23 22 26 26 C 1.35351 * 106.17470 * 180.02562 * 25 24 23 27 27 N 1.33766 * 106.49554 * 359.97438 * 26 25 24 28 28 N 1.28629 * 108.89019 * 359.74000 * 27 26 25 29 29 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 31 31 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 32 32 H 1.09001 * 109.47317 * 295.00638 * 4 2 1 33 33 H 1.09006 * 109.47194 * 55.00274 * 4 2 1 34 34 H 1.00899 * 110.99754 * 56.04975 * 5 4 2 35 35 H 1.09001 * 109.46958 * 299.99902 * 6 5 4 36 36 H 1.09004 * 109.47788 * 59.99447 * 6 5 4 37 37 H 0.96997 * 120.00108 * 359.97438 * 9 7 6 38 38 H 0.96999 * 120.00048 * 180.02562 * 13 12 10 39 39 H 1.08994 * 109.47032 * 89.99688 * 19 18 2 40 40 H 1.08998 * 109.46624 * 209.99482 * 19 18 2 41 41 H 1.08998 * 109.46783 * 329.99227 * 19 18 2 42 42 H 1.09000 * 109.47403 * 299.99392 * 22 20 18 43 43 H 1.09000 * 109.48021 * 60.00086 * 22 20 18 44 44 H 1.08995 * 109.47282 * 299.99771 * 23 22 20 45 45 H 1.09002 * 109.46859 * 59.99920 * 23 22 20 46 46 H 1.07998 * 126.90883 * 359.97438 * 25 24 23 47 47 H 1.08003 * 126.74375 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5041 -0.8266 1.1905 6 6 4.0303 -1.5157 2.3763 7 6 5.5316 -1.6042 2.2810 8 8 6.1067 -1.1393 1.3194 9 7 6.2353 -2.2007 3.2635 10 6 7.6011 -2.2816 3.1765 11 1 8.1132 -1.8670 2.3208 12 6 8.3267 -2.8962 4.1897 13 7 9.6358 -2.9733 4.1065 14 14 7.4410 -3.6128 5.6701 15 1 7.0919 -5.0306 5.3994 16 1 8.3265 -3.5395 6.8599 17 1 6.2007 -2.8381 5.9276 18 7 2.0184 -0.6906 -1.1961 19 6 1.6645 -2.0932 -1.4279 20 6 2.7933 -0.0356 -2.0833 21 8 3.0858 1.1256 -1.8915 22 6 3.2952 -0.7460 -3.3139 23 6 4.1448 0.2159 -4.1470 24 7 4.6333 -0.4748 -5.3431 25 6 4.4604 -0.0654 -6.6212 26 6 5.0667 -0.9922 -7.3993 27 7 5.5746 -1.9108 -6.5701 28 7 5.3057 -1.5722 -5.3586 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 0.5139 0.8900 32 1 1.7516 -0.1583 2.1370 33 1 1.6054 -1.7198 1.2952 34 1 3.9280 0.0827 1.0825 35 1 3.7557 -0.9586 3.2720 36 1 3.6094 -2.5198 2.4297 37 1 5.7754 -2.5728 4.0322 38 1 10.1423 -3.4027 4.8136 39 1 0.7377 -2.1444 -1.9993 40 1 2.4629 -2.5818 -1.9863 41 1 1.5296 -2.5968 -0.4707 42 1 3.9006 -1.6025 -3.0175 43 1 2.4473 -1.0882 -3.9072 44 1 3.5391 1.0722 -4.4434 45 1 4.9928 0.5585 -3.5539 46 1 3.9421 0.8219 -6.9535 47 1 5.1281 -0.9903 -8.4776 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753685169.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:04 Heat of formation + Delta-G solvation = 11.927820 kcal Electronic energy + Delta-G solvation = -29220.562192 eV Core-core repulsion = 25054.181048 eV Total energy + Delta-G solvation = -4166.381143 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.185 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -44.19080 -41.14700 -40.28717 -38.10470 -36.25895 -36.17693 -35.58893 -33.77856 -33.11442 -31.97133 -31.47294 -29.10336 -27.77592 -26.72543 -26.40270 -24.47347 -23.61536 -22.84452 -21.85330 -21.30237 -20.37258 -19.90125 -18.98511 -17.97216 -17.73759 -17.48895 -17.13522 -16.96023 -16.64117 -16.39047 -15.89882 -15.74072 -15.40421 -15.20377 -15.07260 -14.83488 -14.74731 -14.36205 -14.09609 -14.03921 -13.81932 -13.71509 -13.27711 -13.17004 -13.09378 -12.85260 -12.80583 -12.76680 -12.51788 -12.43246 -12.38478 -11.99302 -11.85448 -11.76641 -11.53249 -11.19887 -10.84940 -10.47092 -10.33207 -10.27093 -9.56496 -9.31804 -8.43150 -6.04646 0.67042 1.27841 1.32910 1.34470 1.43225 1.61260 1.65291 1.94330 2.12885 2.21561 2.71545 3.12887 3.36841 3.40931 3.54525 3.62679 3.77972 3.90283 4.11547 4.18272 4.21688 4.23470 4.30470 4.33252 4.36224 4.44809 4.47846 4.53710 4.62477 4.65606 4.73751 4.76680 4.83076 4.89633 5.02571 5.12131 5.29344 5.30469 5.50509 5.62415 5.63846 5.88458 6.04139 6.29356 6.40629 6.57846 6.86381 7.16026 7.37711 7.54273 7.95570 8.74934 Molecular weight = 338.19amu Principal moments of inertia in cm(-1) A = 0.009562 B = 0.002757 C = 0.002244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2927.565720 B =10153.948378 C =12474.856106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.135 3.865 3 H 0.075 0.925 4 C 0.049 3.951 5 N -0.682 5.682 6 C 0.065 3.935 7 C 0.446 3.554 8 O -0.616 6.616 9 N -0.591 5.591 10 C -0.330 4.330 11 H 0.050 0.950 12 C -0.017 4.017 13 N -0.936 5.936 14 Si 0.969 3.031 15 H -0.256 1.256 16 H -0.275 1.275 17 H -0.230 1.230 18 N -0.588 5.588 19 C 0.075 3.925 20 C 0.523 3.477 21 O -0.583 6.583 22 C -0.141 4.141 23 C 0.132 3.868 24 N -0.290 5.290 25 C -0.031 4.031 26 C -0.065 4.065 27 N -0.315 5.315 28 N -0.133 5.133 29 H 0.076 0.924 30 H 0.058 0.942 31 H 0.081 0.919 32 H 0.057 0.943 33 H 0.095 0.905 34 H 0.336 0.664 35 H 0.075 0.925 36 H 0.118 0.882 37 H 0.390 0.610 38 H 0.279 0.721 39 H 0.080 0.920 40 H 0.065 0.935 41 H 0.082 0.918 42 H 0.096 0.904 43 H 0.125 0.875 44 H 0.144 0.856 45 H 0.086 0.914 46 H 0.238 0.762 47 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.162 4.758 -12.610 31.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.032 3.968 3 H 0.094 0.906 4 C -0.080 4.080 5 N -0.313 5.313 6 C -0.067 4.067 7 C 0.234 3.766 8 O -0.500 6.500 9 N -0.233 5.233 10 C -0.459 4.459 11 H 0.069 0.931 12 C -0.216 4.216 13 N -0.577 5.577 14 Si 0.788 3.212 15 H -0.180 1.180 16 H -0.200 1.200 17 H -0.153 1.153 18 N -0.319 5.319 19 C -0.067 4.067 20 C 0.312 3.688 21 O -0.464 6.464 22 C -0.181 4.181 23 C 0.011 3.989 24 N -0.083 5.083 25 C -0.183 4.183 26 C -0.223 4.223 27 N -0.180 5.180 28 N -0.112 5.112 29 H 0.095 0.905 30 H 0.077 0.923 31 H 0.100 0.900 32 H 0.075 0.925 33 H 0.114 0.886 34 H 0.154 0.846 35 H 0.093 0.907 36 H 0.136 0.864 37 H 0.226 0.774 38 H 0.089 0.911 39 H 0.099 0.901 40 H 0.084 0.916 41 H 0.101 0.899 42 H 0.114 0.886 43 H 0.143 0.857 44 H 0.161 0.839 45 H 0.104 0.896 46 H 0.254 0.746 47 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -26.827 3.892 -12.550 29.872 hybrid contribution 0.299 1.061 0.951 1.456 sum -26.528 4.953 -11.599 29.373 Atomic orbital electron populations 1.21997 0.91637 1.03706 1.03150 1.21175 0.95602 0.96601 0.83459 0.90631 1.22500 0.86490 1.02166 0.96871 1.60027 1.05828 1.26153 1.39330 1.21619 0.89232 1.02403 0.93460 1.21102 0.90951 0.81508 0.83063 1.90568 1.73015 1.51890 1.34550 1.42017 1.06068 1.53959 1.21215 1.18981 0.82046 1.37527 1.07361 0.93148 1.26180 0.96212 0.97261 1.01922 1.69814 1.07614 1.44340 1.35915 0.85318 0.79411 0.79742 0.76714 1.18009 1.20005 1.15285 1.47628 1.49484 1.13148 1.21644 1.21931 1.01299 0.80006 1.03432 1.20352 0.77516 0.86302 0.84666 1.90683 1.59017 1.18755 1.77956 1.21765 1.01842 0.99543 0.94969 1.21911 0.99877 0.94614 0.82450 1.47732 1.34728 1.16823 1.09045 1.24507 1.06540 1.04916 0.82306 1.24318 1.02099 0.92885 1.03002 1.75087 1.20754 1.25913 0.96222 1.78375 1.13487 1.02014 1.17343 0.90467 0.92267 0.90035 0.92468 0.88642 0.84616 0.90709 0.86437 0.77415 0.91113 0.90125 0.91618 0.89905 0.88550 0.85712 0.83854 0.89577 0.74603 0.76253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.19 71.98 0.66 -0.83 16 2 C 0.14 2.36 2.88 44.99 0.13 2.49 16 3 H 0.08 1.74 6.90 -2.39 -0.02 1.73 16 4 C 0.05 0.87 4.93 86.30 0.43 1.29 16 5 N -0.68 -19.53 5.85 -517.93 -3.03 -22.56 16 6 C 0.07 1.93 6.17 85.56 0.53 2.46 16 7 C 0.45 20.48 7.82 87.66 0.69 21.16 16 8 O -0.62 -35.43 15.78 -3.09 -0.05 -35.48 16 9 N -0.59 -28.30 5.09 -306.98 -1.56 -29.86 16 10 C -0.33 -19.83 10.16 84.04 0.85 -18.98 16 11 H 0.05 3.64 7.39 -2.91 -0.02 3.62 16 12 C -0.02 -0.98 5.50 84.93 0.47 -0.52 16 13 N -0.94 -57.75 13.96 21.66 0.30 -57.45 16 14 Si 0.97 39.16 27.74 68.60 1.90 41.06 16 15 H -0.26 -9.76 7.11 99.48 0.71 -9.05 16 16 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 17 H -0.23 -7.71 6.52 99.48 0.65 -7.06 16 18 N -0.59 -11.10 2.49 -822.62 -2.04 -13.14 16 19 C 0.08 1.00 9.30 127.77 1.19 2.19 16 20 C 0.52 12.27 7.67 87.66 0.67 12.94 16 21 O -0.58 -17.67 15.31 -3.01 -0.05 -17.72 16 22 C -0.14 -2.69 4.38 29.85 0.13 -2.56 16 23 C 0.13 2.54 5.74 86.38 0.50 3.03 16 24 N -0.29 -6.23 3.44 -347.72 -1.20 -7.42 16 25 C -0.03 -0.45 11.57 83.49 0.97 0.51 16 26 C -0.07 -1.19 12.05 83.73 1.01 -0.18 16 27 N -0.31 -9.12 12.41 -58.26 -0.72 -9.84 16 28 N -0.13 -4.01 12.92 37.02 0.48 -3.53 16 29 H 0.08 0.56 7.67 -2.39 -0.02 0.54 16 30 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.08 0.65 8.14 -2.38 -0.02 0.63 16 32 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.10 1.33 6.88 -2.38 -0.02 1.31 16 34 H 0.34 11.53 8.43 -89.69 -0.76 10.78 16 35 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.12 2.81 8.14 -2.38 -0.02 2.79 16 37 H 0.39 15.28 5.76 -92.71 -0.53 14.74 16 38 H 0.28 15.70 8.31 -92.71 -0.77 14.93 16 39 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 40 H 0.07 1.00 6.44 -2.39 -0.02 0.99 16 41 H 0.08 1.00 6.53 -2.39 -0.02 0.98 16 42 H 0.10 2.28 7.38 -2.39 -0.02 2.26 16 43 H 0.12 1.63 8.11 -2.39 -0.02 1.61 16 44 H 0.14 1.82 8.03 -2.39 -0.02 1.80 16 45 H 0.09 2.13 8.10 -2.39 -0.02 2.11 16 46 H 0.24 0.86 8.06 -2.91 -0.02 0.83 16 47 H 0.22 2.18 8.06 -2.91 -0.02 2.16 16 Total: -1.00 -93.61 393.97 1.91 -91.70 By element: Atomic # 1 Polarization: 41.57 SS G_CDS: -0.34 Total: 41.22 kcal Atomic # 6 Polarization: 14.80 SS G_CDS: 8.21 Total: 23.02 kcal Atomic # 7 Polarization: -136.03 SS G_CDS: -7.77 Total: -143.80 kcal Atomic # 8 Polarization: -53.10 SS G_CDS: -0.09 Total: -53.20 kcal Atomic # 14 Polarization: 39.16 SS G_CDS: 1.90 Total: 41.06 kcal Total: -93.61 1.91 -91.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753685169.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.626 kcal (2) G-P(sol) polarization free energy of solvation -93.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.699 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds