Wall clock time and date at job start Tue Mar 31 2020 20:37:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86808 * 119.99865 * 2 1 4 4 H 1.48506 * 109.46578 * 269.99749 * 3 2 1 5 5 H 1.48497 * 109.46981 * 29.99772 * 3 2 1 6 6 H 1.48499 * 109.47113 * 150.00106 * 3 2 1 7 7 C 1.37875 * 120.00212 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00405 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99990 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47115 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.46860 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.46914 * 179.97438 * 11 10 9 13 13 C 1.50693 * 109.47167 * 179.97438 * 12 11 10 14 14 O 1.21280 * 119.99880 * 0.02562 * 13 12 11 15 15 N 1.34774 * 120.00182 * 180.02562 * 13 12 11 16 16 C 1.46923 * 120.64719 * 179.97438 * 15 13 12 17 17 C 1.53181 * 108.78221 * 126.42461 * 16 15 13 18 18 C 1.53116 * 109.31590 * 54.72311 * 17 16 15 19 19 C 1.53103 * 109.41941 * 298.55898 * 18 17 16 20 20 C 1.46928 * 120.64438 * 0.02562 * 15 13 12 21 21 C 1.53150 * 109.23066 * 179.01174 * 18 17 16 22 22 C 1.53345 * 108.40412 * 288.94210 * 21 18 17 23 23 H 1.08996 * 109.60535 * 52.25195 * 22 21 18 24 24 O 1.42900 * 109.60517 * 172.58168 * 22 21 18 25 25 C 1.52908 * 108.67194 * 292.34898 * 22 21 18 26 26 N 1.45750 * 110.47808 * 50.66711 * 25 22 21 27 27 C 1.33334 * 124.14376 * 341.05870 * 26 25 22 28 28 O 1.21283 * 118.23277 * 182.21151 * 27 26 25 29 29 H 0.97001 * 120.00096 * 359.97438 * 1 2 3 30 30 H 1.08995 * 109.46879 * 59.99708 * 9 7 2 31 31 H 1.09001 * 109.47007 * 299.99856 * 9 7 2 32 32 H 1.08993 * 109.47176 * 59.99753 * 10 9 7 33 33 H 1.09001 * 109.46904 * 299.99721 * 10 9 7 34 34 H 1.09004 * 109.47005 * 59.99802 * 11 10 9 35 35 H 1.09001 * 109.47054 * 299.99530 * 11 10 9 36 36 H 1.09007 * 109.46807 * 59.99576 * 12 11 10 37 37 H 1.08993 * 109.47324 * 300.00180 * 12 11 10 38 38 H 1.08999 * 109.58723 * 6.64005 * 16 15 13 39 39 H 1.09002 * 109.70846 * 246.28402 * 16 15 13 40 40 H 1.08990 * 109.49778 * 294.77218 * 17 16 15 41 41 H 1.09006 * 109.52118 * 174.68916 * 17 16 15 42 42 H 1.08997 * 109.49947 * 181.39171 * 19 18 17 43 43 H 1.09007 * 109.49072 * 301.48479 * 19 18 17 44 44 H 1.08996 * 109.58935 * 353.35156 * 20 15 13 45 45 H 1.08997 * 109.58914 * 113.63902 * 20 15 13 46 46 H 1.08993 * 109.67633 * 48.66911 * 21 18 17 47 47 H 1.08998 * 109.67955 * 169.21459 * 21 18 17 48 48 H 0.96693 * 113.99951 * 180.02562 * 24 22 21 49 49 H 1.09000 * 109.29993 * 290.35743 * 25 22 21 50 50 H 1.09009 * 109.30013 * 170.97569 * 25 22 21 51 51 H 0.96999 * 117.92777 * 161.33091 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0018 11 6 1.4803 -4.9871 0.0012 12 6 2.4746 -6.1500 0.0018 13 6 1.7212 -7.4551 0.0018 14 8 0.5084 -7.4551 0.0009 15 7 2.3950 -8.6222 0.0029 16 6 1.6749 -9.9028 0.0034 17 6 2.1841 -10.7556 -1.1627 18 6 3.7060 -10.8921 -1.0636 19 6 4.3488 -9.5060 -1.1619 20 6 3.8642 -8.6388 0.0046 21 6 4.2102 -11.7653 -2.2163 22 6 3.7751 -13.2121 -1.9538 23 1 2.7028 -13.2423 -1.7610 24 8 4.0804 -14.0189 -3.0931 25 6 4.5336 -13.7379 -0.7346 26 7 4.4178 -12.8050 0.3793 27 6 4.0703 -11.5243 0.2497 28 8 4.0466 -10.8326 1.2458 29 1 -0.4850 0.8400 0.0004 30 1 0.6247 -2.5571 -0.8896 31 1 0.6241 -2.5568 0.8903 32 1 2.8713 -3.6039 0.8922 33 1 2.8726 -3.6047 -0.8877 34 1 0.8546 -5.0449 -0.8895 35 1 0.8527 -5.0447 0.8905 36 1 3.1007 -6.0922 0.8923 37 1 3.1019 -6.0922 -0.8876 38 1 0.6067 -9.7214 -0.1158 39 1 1.8540 -10.4249 0.9434 40 1 1.9226 -10.2757 -2.1057 41 1 1.7266 -11.7440 -1.1182 42 1 5.4334 -9.6039 -1.1164 43 1 4.0645 -9.0393 -2.1051 44 1 4.2413 -7.6230 -0.1141 45 1 4.2239 -9.0544 0.9458 46 1 3.7803 -11.4175 -3.1555 47 1 5.2977 -11.7128 -2.2681 48 1 3.8308 -14.9479 -2.9954 49 1 5.5854 -13.8637 -0.9913 50 1 4.1196 -14.7026 -0.4411 51 1 4.6093 -13.1358 1.2707 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001302836708.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:53 Heat of formation + Delta-G solvation = -136.063937 kcal Electronic energy + Delta-G solvation = -30116.517182 eV Core-core repulsion = 26014.966227 eV Total energy + Delta-G solvation = -4101.550955 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.89499 -39.66879 -38.29893 -37.16418 -35.63119 -34.83485 -34.01523 -32.62105 -31.57812 -30.29575 -29.48579 -27.99788 -25.70105 -24.45471 -23.86727 -23.44424 -22.28837 -21.60682 -19.96488 -19.37029 -18.76923 -18.40676 -17.51795 -16.88302 -16.35143 -16.17241 -16.01680 -15.69133 -15.62559 -15.22826 -14.81584 -14.63333 -14.39903 -14.17452 -14.09637 -13.62438 -13.49704 -13.20648 -12.97151 -12.89428 -12.58747 -12.42131 -12.26886 -12.00918 -11.75044 -11.60897 -11.54754 -11.37939 -11.17029 -10.99788 -10.93039 -10.73773 -10.46462 -10.43820 -10.31227 -9.92434 -9.64858 -9.56638 -9.53171 -9.14349 -8.91570 -8.50189 -8.25472 -5.90248 -3.92496 2.11301 2.59239 2.85372 3.05581 3.30230 3.37475 3.43259 3.46826 3.84536 3.88497 3.95897 4.25889 4.35540 4.42551 4.52892 4.53297 4.69356 4.78661 4.87711 4.92873 5.05908 5.17472 5.19621 5.28865 5.30394 5.39073 5.42316 5.44648 5.47868 5.53601 5.55249 5.68396 5.79380 5.95087 6.00598 6.23009 6.23933 6.38778 6.52159 6.65584 6.71724 6.88190 6.93189 7.10770 7.27633 7.50703 7.72533 7.80069 7.96946 8.11836 8.38041 8.53692 9.15288 9.70774 11.21068 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.028402 B = 0.001835 C = 0.001824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.607672 B =15256.163045 C =15350.730939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.054 3.946 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.519 4.519 8 H 0.054 0.946 9 C 0.019 3.981 10 C -0.110 4.110 11 C -0.103 4.103 12 C -0.137 4.137 13 C 0.514 3.486 14 O -0.541 6.541 15 N -0.610 5.610 16 C 0.109 3.891 17 C -0.118 4.118 18 C -0.067 4.067 19 C -0.113 4.113 20 C 0.090 3.910 21 C -0.110 4.110 22 C 0.090 3.910 23 H 0.070 0.930 24 O -0.555 6.555 25 C 0.078 3.922 26 N -0.717 5.717 27 C 0.525 3.475 28 O -0.529 6.529 29 H 0.259 0.741 30 H 0.016 0.984 31 H 0.016 0.984 32 H 0.046 0.954 33 H 0.046 0.954 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.093 0.907 39 H 0.071 0.929 40 H 0.085 0.915 41 H 0.075 0.925 42 H 0.078 0.922 43 H 0.081 0.919 44 H 0.085 0.915 45 H 0.110 0.890 46 H 0.089 0.911 47 H 0.080 0.920 48 H 0.382 0.618 49 H 0.075 0.925 50 H 0.079 0.921 51 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.851 -36.165 -3.985 38.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.557 4.557 8 H 0.072 0.928 9 C -0.018 4.018 10 C -0.148 4.148 11 C -0.141 4.141 12 C -0.177 4.177 13 C 0.304 3.696 14 O -0.418 6.418 15 N -0.344 5.344 16 C -0.014 4.014 17 C -0.157 4.157 18 C -0.070 4.070 19 C -0.151 4.151 20 C -0.033 4.033 21 C -0.148 4.148 22 C 0.030 3.970 23 H 0.088 0.912 24 O -0.360 6.360 25 C -0.048 4.048 26 N -0.371 5.371 27 C 0.312 3.688 28 O -0.406 6.406 29 H 0.069 0.931 30 H 0.034 0.966 31 H 0.034 0.966 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.108 0.892 37 H 0.107 0.893 38 H 0.111 0.889 39 H 0.089 0.911 40 H 0.103 0.897 41 H 0.094 0.906 42 H 0.097 0.903 43 H 0.099 0.901 44 H 0.103 0.897 45 H 0.128 0.872 46 H 0.108 0.892 47 H 0.099 0.901 48 H 0.230 0.770 49 H 0.094 0.906 50 H 0.097 0.903 51 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 11.201 -35.019 -3.929 36.976 hybrid contribution 0.496 -0.072 0.446 0.671 sum 11.697 -35.091 -3.482 37.152 Atomic orbital electron populations 1.69978 1.06030 1.26435 1.51043 1.25048 0.94845 0.99207 0.95543 0.86613 0.79829 0.83642 0.78003 1.20745 1.21285 1.19936 1.21294 0.92980 0.91217 1.50225 0.92763 1.19100 0.94083 0.91275 0.97300 1.21646 0.99054 0.94047 1.00013 1.21453 0.97036 0.92718 1.02868 1.21800 1.00053 0.92118 1.03698 1.21071 0.88149 0.85435 0.74960 1.90676 1.14206 1.87282 1.49599 1.48004 1.06774 1.05411 1.74198 1.21511 0.98027 0.84151 0.97665 1.22012 0.91770 1.00902 1.01006 1.20648 0.98027 0.96575 0.91743 1.21869 1.00276 0.92454 1.00531 1.22248 0.79717 1.00715 1.00601 1.21778 1.02455 0.91650 0.98891 1.22049 0.98304 0.91767 0.84851 0.91215 1.86590 1.86429 1.24291 1.38653 1.22143 1.01969 0.92941 0.87710 1.45379 1.70519 1.10145 1.11028 1.20092 0.75945 0.81458 0.91319 1.90665 1.52432 1.58698 1.38823 0.93093 0.96607 0.96588 0.93496 0.93545 0.91898 0.91861 0.89228 0.89314 0.88907 0.91058 0.89675 0.90619 0.90317 0.90056 0.89718 0.87234 0.89230 0.90126 0.77014 0.90644 0.90303 0.76147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.00 13.29 55.43 0.74 -27.27 16 2 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 22.29 29.54 -169.99 -5.02 17.27 16 4 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.52 -15.29 9.11 -34.44 -0.31 -15.60 16 8 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 9 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 10 C -0.11 -2.37 5.15 -26.73 -0.14 -2.50 16 11 C -0.10 -1.96 4.50 -26.73 -0.12 -2.08 16 12 C -0.14 -2.03 4.05 -27.89 -0.11 -2.14 16 13 C 0.51 8.09 7.70 -10.99 -0.08 8.01 16 14 O -0.54 -10.59 15.40 5.56 0.09 -10.51 16 15 N -0.61 -7.60 2.97 -172.76 -0.51 -8.11 16 16 C 0.11 1.22 5.91 -3.72 -0.02 1.19 16 17 C -0.12 -0.90 4.72 -26.58 -0.13 -1.03 16 18 C -0.07 -0.45 0.52 -155.69 -0.08 -0.53 16 19 C -0.11 -0.85 4.85 -26.56 -0.13 -0.98 16 20 C 0.09 0.90 5.80 -3.69 -0.02 0.88 16 21 C -0.11 -0.57 4.41 -26.47 -0.12 -0.69 16 22 C 0.09 0.33 3.50 -26.60 -0.09 0.24 16 23 H 0.07 0.24 6.41 -51.93 -0.33 -0.09 16 24 O -0.55 -2.14 13.33 -35.23 -0.47 -2.61 16 25 C 0.08 0.20 6.80 -4.49 -0.03 0.17 16 26 N -0.72 -3.50 5.45 -61.37 -0.33 -3.84 16 27 C 0.52 4.07 6.13 -11.85 -0.07 3.99 16 28 O -0.53 -5.88 12.26 5.56 0.07 -5.81 16 29 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 30 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.06 1.27 8.10 -51.93 -0.42 0.85 16 35 H 0.06 1.29 8.10 -51.93 -0.42 0.87 16 36 H 0.09 1.20 7.94 -51.93 -0.41 0.79 16 37 H 0.09 1.14 7.69 -51.93 -0.40 0.74 16 38 H 0.09 1.17 7.01 -51.93 -0.36 0.81 16 39 H 0.07 0.83 6.50 -51.93 -0.34 0.50 16 40 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.08 0.45 6.53 -51.93 -0.34 0.11 16 42 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 43 H 0.08 0.59 8.14 -51.92 -0.42 0.17 16 44 H 0.08 0.78 5.94 -51.93 -0.31 0.47 16 45 H 0.11 1.25 5.21 -51.94 -0.27 0.97 16 46 H 0.09 0.49 8.10 -51.93 -0.42 0.07 16 47 H 0.08 0.42 8.10 -51.93 -0.42 0.00 16 48 H 0.38 -0.18 9.09 45.56 0.41 0.24 16 49 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 50 H 0.08 0.04 8.14 -51.92 -0.42 -0.39 16 51 H 0.40 1.67 8.80 -40.82 -0.36 1.31 16 LS Contribution 389.99 15.07 5.88 5.88 Total: -1.00 -37.58 389.99 -9.01 -46.59 By element: Atomic # 1 Polarization: 5.30 SS G_CDS: -7.74 Total: -2.44 kcal Atomic # 6 Polarization: -7.46 SS G_CDS: -1.70 Total: -9.16 kcal Atomic # 7 Polarization: -39.11 SS G_CDS: -0.11 Total: -39.22 kcal Atomic # 8 Polarization: -18.61 SS G_CDS: -0.32 Total: -18.92 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -37.58 -9.01 -46.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001302836708.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.473 kcal (2) G-P(sol) polarization free energy of solvation -37.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds