Wall clock time and date at job start Tue Mar 31 2020 20:48:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86796 * 119.99685 * 2 1 4 4 H 1.48502 * 109.47087 * 269.99688 * 3 2 1 5 5 H 1.48493 * 109.47609 * 29.99981 * 3 2 1 6 6 H 1.48502 * 109.46796 * 150.00415 * 3 2 1 7 7 C 1.38813 * 119.99641 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99949 * 359.97438 * 7 2 1 9 9 N 1.36935 * 119.99607 * 179.97438 * 7 2 1 10 10 C 1.46499 * 120.00124 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47346 * 180.02562 * 10 9 7 12 12 H 1.09002 * 109.51502 * 305.10435 * 11 10 9 13 13 C 1.53299 * 109.51237 * 185.00325 * 11 10 9 14 14 N 1.47148 * 108.38062 * 187.77311 * 13 11 10 15 15 C 1.34785 * 120.97930 * 230.50932 * 14 13 11 16 16 O 1.21270 * 120.00235 * 0.02562 * 15 14 13 17 17 C 1.50704 * 119.99776 * 180.02562 * 15 14 13 18 18 H 1.09002 * 115.54803 * 34.33500 * 17 15 14 19 19 C 1.52993 * 117.50044 * 248.62201 * 17 15 14 20 20 C 1.52991 * 60.00240 * 252.51085 * 19 17 15 21 21 H 1.09004 * 117.52173 * 107.47807 * 20 19 17 22 22 C 1.52999 * 117.50174 * 252.51172 * 20 19 17 23 23 C 1.53176 * 109.54103 * 248.62019 * 22 20 19 24 24 C 1.53095 * 109.16286 * 183.14851 * 23 22 20 25 25 O 1.42903 * 109.41530 * 57.61206 * 24 23 22 26 26 C 1.42906 * 114.09431 * 298.84283 * 25 24 23 27 27 C 1.53095 * 109.41780 * 61.15768 * 26 25 24 28 28 C 1.47154 * 118.04011 * 50.78869 * 14 13 11 29 29 C 1.53711 * 108.15954 * 309.15885 * 28 14 13 30 30 O 1.42954 * 109.14980 * 52.53199 * 29 28 14 31 31 H 0.97000 * 119.99530 * 359.97438 * 1 2 3 32 32 H 0.97000 * 120.00009 * 0.02562 * 9 7 2 33 33 H 1.09000 * 109.46830 * 60.00479 * 10 9 7 34 34 H 1.08995 * 109.47154 * 300.00621 * 10 9 7 35 35 H 1.09004 * 109.67913 * 68.05134 * 13 11 10 36 36 H 1.08999 * 109.68194 * 307.49783 * 13 11 10 37 37 H 1.08999 * 117.49837 * 145.01792 * 19 17 15 38 38 H 1.09008 * 117.50035 * 0.02562 * 19 17 15 39 39 H 1.08994 * 109.61250 * 8.83967 * 22 20 19 40 40 H 1.09001 * 109.52789 * 303.05792 * 23 22 20 41 41 H 1.09007 * 109.52321 * 63.24507 * 23 22 20 42 42 H 1.08997 * 109.47843 * 177.59528 * 24 23 22 43 43 H 1.08997 * 109.48336 * 297.62823 * 24 23 22 44 44 H 1.08998 * 109.48318 * 301.17291 * 26 25 24 45 45 H 1.09003 * 109.48246 * 181.13928 * 26 25 24 46 46 H 1.08998 * 109.52174 * 182.48760 * 27 26 25 47 47 H 1.08997 * 109.57369 * 62.32549 * 27 26 25 48 48 H 1.08998 * 109.67934 * 68.93233 * 28 14 13 49 49 H 1.08998 * 109.68699 * 189.48506 * 28 14 13 50 50 H 1.09007 * 109.65339 * 292.56550 * 29 28 14 51 51 H 1.08994 * 109.48523 * 172.39876 * 29 28 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3796 -1.2022 -0.0011 10 6 4.1122 -2.4709 -0.0011 11 6 5.6164 -2.1913 -0.0011 12 1 5.8664 -1.5439 -0.8416 13 6 6.3828 -3.5130 -0.1271 14 7 7.8158 -3.2383 0.0632 15 6 8.7312 -3.6860 -0.8190 16 8 8.3782 -4.3252 -1.7873 17 6 10.1933 -3.3924 -0.6021 18 1 10.5185 -3.3673 0.4380 19 6 10.8732 -2.4308 -1.5788 20 6 11.1828 -3.9279 -1.6389 21 1 10.7763 -4.4930 -2.4777 22 6 12.5532 -4.3867 -1.1365 23 6 13.3916 -4.8846 -2.3178 24 6 14.7300 -5.4142 -1.7964 25 8 14.4915 -6.4538 -0.8453 26 6 13.7524 -6.0350 0.3038 27 6 12.3747 -5.5303 -0.1333 28 6 8.2207 -2.4658 1.2484 29 6 7.3642 -1.1907 1.3046 30 8 5.9828 -1.5496 1.2227 31 1 -0.4849 0.8401 0.0004 32 1 3.8646 -0.3621 -0.0007 33 1 3.8485 -3.0426 -0.8909 34 1 3.8491 -3.0423 0.8890 35 1 6.2190 -3.9394 -1.1168 36 1 6.0383 -4.2113 0.6357 37 1 11.6458 -1.7727 -1.1813 38 1 10.2629 -2.0102 -2.3781 39 1 13.0633 -3.5536 -0.6529 40 1 12.8584 -5.6847 -2.8314 41 1 13.5703 -4.0619 -3.0102 42 1 15.3135 -5.8092 -2.6280 43 1 15.2804 -4.6038 -1.3185 44 1 14.2899 -5.2326 0.8091 45 1 13.6317 -6.8772 0.9852 46 1 11.8262 -5.1694 0.7367 47 1 11.8201 -6.3430 -0.6023 48 1 8.0581 -3.0605 2.1473 49 1 9.2745 -2.1985 1.1701 50 1 7.6212 -0.5392 0.4693 51 1 7.5498 -0.6691 2.2435 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717174019.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:03 Heat of formation + Delta-G solvation = -87.045502 kcal Electronic energy + Delta-G solvation = -29831.704670 eV Core-core repulsion = 25732.279313 eV Total energy + Delta-G solvation = -4099.425356 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.83564 -39.87754 -38.71793 -37.04943 -35.22169 -34.55235 -33.40927 -32.24197 -31.56508 -30.61582 -28.43128 -26.79294 -25.77261 -24.24851 -23.66813 -23.55077 -21.97244 -21.50784 -20.98843 -20.44633 -19.08390 -17.93382 -17.51888 -16.68678 -16.56512 -16.43580 -16.15555 -15.58278 -15.31858 -15.19183 -15.10329 -14.75406 -14.41125 -14.28766 -14.23945 -13.91618 -13.43262 -13.23359 -12.90733 -12.85141 -12.78060 -12.51824 -12.35457 -12.26922 -11.87250 -11.81793 -11.58253 -11.36123 -11.24649 -11.10932 -11.03642 -10.85973 -10.63256 -10.54264 -10.36868 -10.19159 -10.02576 -9.94697 -9.89465 -9.56932 -8.89595 -8.66691 -7.21318 -5.74336 -3.09643 2.23254 2.60673 3.37569 3.40314 3.44024 3.44906 3.47344 3.77939 3.91937 4.20282 4.21351 4.42868 4.45431 4.54557 4.56937 4.62533 4.63838 4.71061 4.79008 4.82317 4.89781 4.91028 4.98396 5.03087 5.14705 5.16660 5.22409 5.26616 5.29431 5.35624 5.42023 5.50727 5.51760 5.55322 5.57110 5.60912 5.64936 5.73206 5.75806 5.76445 5.92592 5.96754 6.20348 6.44977 6.58272 6.74227 7.13666 7.28843 7.94331 8.00713 8.44259 9.23295 9.95624 10.15783 11.43903 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.029720 B = 0.001982 C = 0.001971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.910995 B =14122.010640 C =14199.661454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.004 3.996 3 Si 0.884 3.116 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.274 1.274 7 C -0.243 4.243 8 H 0.091 0.909 9 N -0.750 5.750 10 C 0.168 3.832 11 C 0.070 3.930 12 H 0.063 0.937 13 C 0.086 3.914 14 N -0.611 5.611 15 C 0.545 3.455 16 O -0.538 6.538 17 C -0.188 4.188 18 H 0.123 0.877 19 C -0.146 4.146 20 C -0.111 4.111 21 H 0.119 0.881 22 C -0.058 4.058 23 C -0.149 4.149 24 C 0.060 3.940 25 O -0.384 6.384 26 C 0.060 3.940 27 C -0.150 4.150 28 C 0.073 3.927 29 C 0.045 3.955 30 O -0.361 6.361 31 H 0.259 0.741 32 H 0.364 0.636 33 H 0.045 0.955 34 H 0.038 0.962 35 H 0.103 0.897 36 H 0.080 0.920 37 H 0.105 0.895 38 H 0.101 0.899 39 H 0.073 0.927 40 H 0.075 0.925 41 H 0.076 0.924 42 H 0.094 0.906 43 H 0.049 0.951 44 H 0.049 0.951 45 H 0.094 0.906 46 H 0.073 0.927 47 H 0.076 0.924 48 H 0.079 0.921 49 H 0.093 0.907 50 H 0.053 0.947 51 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 33.560 -8.116 0.789 34.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.191 4.191 3 Si 0.714 3.286 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.200 1.200 7 C -0.373 4.373 8 H 0.109 0.891 9 N -0.396 5.396 10 C 0.040 3.960 11 C 0.011 3.989 12 H 0.081 0.919 13 C -0.037 4.037 14 N -0.345 5.345 15 C 0.334 3.666 16 O -0.415 6.415 17 C -0.209 4.209 18 H 0.141 0.859 19 C -0.184 4.184 20 C -0.129 4.129 21 H 0.137 0.863 22 C -0.077 4.077 23 C -0.187 4.187 24 C -0.017 4.017 25 O -0.303 6.303 26 C -0.016 4.016 27 C -0.188 4.188 28 C -0.050 4.050 29 C -0.033 4.033 30 O -0.279 6.279 31 H 0.069 0.931 32 H 0.197 0.803 33 H 0.063 0.937 34 H 0.056 0.944 35 H 0.121 0.879 36 H 0.098 0.902 37 H 0.123 0.877 38 H 0.119 0.881 39 H 0.092 0.908 40 H 0.094 0.906 41 H 0.095 0.905 42 H 0.112 0.888 43 H 0.068 0.932 44 H 0.067 0.933 45 H 0.112 0.888 46 H 0.092 0.908 47 H 0.094 0.906 48 H 0.097 0.903 49 H 0.111 0.889 50 H 0.072 0.928 51 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 33.049 -8.702 0.396 34.178 hybrid contribution 0.505 1.608 0.086 1.688 sum 33.554 -7.094 0.482 34.300 Atomic orbital electron populations 1.69709 1.05073 1.25799 1.57629 1.24659 0.95245 0.97223 1.02015 0.86539 0.79461 0.84908 0.77710 1.21188 1.21729 1.20028 1.19054 0.80474 0.94819 1.42959 0.89134 1.42571 1.03978 1.01971 1.91077 1.20602 0.85439 0.90274 0.99711 1.22859 0.96744 0.92172 0.87097 0.91943 1.22330 0.78762 0.98121 1.04473 1.48075 1.07152 1.54603 1.24621 1.19650 0.86532 0.78561 0.81887 1.90699 1.81243 1.39995 1.29568 1.22256 0.91330 1.08997 0.98337 0.85880 1.23103 1.02102 0.92747 1.00403 1.22414 0.94202 0.96446 0.99845 0.86258 1.20809 0.93365 0.97617 0.95872 1.22225 0.96683 1.01776 0.97976 1.22592 0.95922 0.90823 0.92319 1.87949 1.74612 1.35870 1.31832 1.22599 0.91039 1.00153 0.87832 1.22232 0.98039 0.98927 0.99604 1.22598 1.00093 0.93984 0.88335 1.23004 0.82825 0.94618 1.02869 1.88146 1.23533 1.78382 1.37846 0.93087 0.80338 0.93697 0.94398 0.87882 0.90212 0.87713 0.88078 0.90816 0.90614 0.90517 0.88786 0.93246 0.93261 0.88801 0.90836 0.90575 0.90311 0.88923 0.92844 0.87773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.78 13.97 55.49 0.78 -29.00 16 2 C 0.00 0.13 5.50 -17.43 -0.10 0.03 16 3 Si 0.88 22.58 27.74 -169.99 -4.71 17.87 16 4 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 5 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 6 H -0.27 -6.68 6.52 56.52 0.37 -6.31 16 7 C -0.24 -7.05 10.47 -15.06 -0.16 -7.21 16 8 H 0.09 2.78 8.06 -52.49 -0.42 2.36 16 9 N -0.75 -18.46 5.36 -59.91 -0.32 -18.78 16 10 C 0.17 3.30 5.93 -4.04 -0.02 3.28 16 11 C 0.07 1.13 2.81 -26.58 -0.07 1.05 16 12 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 13 C 0.09 1.18 5.92 -3.53 -0.02 1.16 16 14 N -0.61 -7.25 3.01 -172.02 -0.52 -7.76 16 15 C 0.55 6.70 7.50 -10.98 -0.08 6.62 16 16 O -0.54 -8.62 15.73 5.57 0.09 -8.53 16 17 C -0.19 -1.55 4.21 -91.77 -0.39 -1.93 16 18 H 0.12 0.75 6.43 -51.93 -0.33 0.42 16 19 C -0.15 -1.03 9.88 -26.74 -0.26 -1.29 16 20 C -0.11 -0.85 4.67 -90.63 -0.42 -1.27 16 21 H 0.12 1.18 7.64 -51.93 -0.40 0.78 16 22 C -0.06 -0.35 2.42 -90.44 -0.22 -0.57 16 23 C -0.15 -0.87 5.41 -26.59 -0.14 -1.01 16 24 C 0.06 0.35 6.84 37.21 0.25 0.60 16 25 O -0.38 -3.13 10.77 -35.23 -0.38 -3.51 16 26 C 0.06 0.37 6.84 37.21 0.25 0.62 16 27 C -0.15 -0.95 5.22 -26.59 -0.14 -1.09 16 28 C 0.07 0.66 6.51 -3.32 -0.02 0.63 16 29 C 0.04 0.50 7.00 37.53 0.26 0.76 16 30 O -0.36 -5.81 10.33 -35.23 -0.36 -6.18 16 31 H 0.26 7.85 8.31 -40.82 -0.34 7.51 16 32 H 0.36 8.86 5.53 -40.82 -0.23 8.64 16 33 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.10 1.50 7.08 -51.93 -0.37 1.14 16 36 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 37 H 0.10 0.52 8.05 -51.93 -0.42 0.10 16 38 H 0.10 0.84 8.14 -51.92 -0.42 0.42 16 39 H 0.07 0.37 7.91 -51.93 -0.41 -0.04 16 40 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.08 0.37 8.14 -51.92 -0.42 -0.05 16 42 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.05 0.24 8.14 -51.93 -0.42 -0.19 16 44 H 0.05 0.25 8.14 -51.93 -0.42 -0.18 16 45 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 46 H 0.07 0.41 7.45 -51.93 -0.39 0.02 16 47 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 48 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 49 H 0.09 0.57 5.82 -51.93 -0.30 0.26 16 50 H 0.05 0.59 8.14 -51.92 -0.42 0.16 16 51 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 LS Contribution 399.17 15.07 6.02 6.02 Total: -1.00 -35.71 399.17 -9.47 -45.18 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: -8.77 Total: 4.30 kcal Atomic # 6 Polarization: 1.67 SS G_CDS: -1.28 Total: 0.39 kcal Atomic # 7 Polarization: -55.48 SS G_CDS: -0.06 Total: -55.54 kcal Atomic # 8 Polarization: -17.56 SS G_CDS: -0.66 Total: -18.22 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -4.71 Total: 17.87 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -35.71 -9.47 -45.18 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717174019.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.862 kcal (2) G-P(sol) polarization free energy of solvation -35.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds