Wall clock time and date at job start Tue Mar 31 2020 20:48:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86796 * 119.99685 * 2 1 4 4 H 1.48502 * 109.47087 * 269.99688 * 3 2 1 5 5 H 1.48493 * 109.47609 * 29.99981 * 3 2 1 6 6 H 1.48502 * 109.46796 * 150.00415 * 3 2 1 7 7 C 1.38813 * 119.99641 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99949 * 359.97438 * 7 2 1 9 9 N 1.36935 * 119.99607 * 179.97438 * 7 2 1 10 10 C 1.46499 * 120.00124 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47346 * 180.02562 * 10 9 7 12 12 H 1.09002 * 109.51502 * 305.10435 * 11 10 9 13 13 C 1.53299 * 109.51237 * 185.00325 * 11 10 9 14 14 N 1.47148 * 108.38062 * 187.77311 * 13 11 10 15 15 C 1.34785 * 120.97930 * 230.50932 * 14 13 11 16 16 O 1.21270 * 120.00235 * 0.02562 * 15 14 13 17 17 C 1.50704 * 119.99776 * 180.02562 * 15 14 13 18 18 H 1.09002 * 115.54803 * 34.33500 * 17 15 14 19 19 C 1.52993 * 117.50044 * 248.62201 * 17 15 14 20 20 C 1.52991 * 60.00240 * 252.51085 * 19 17 15 21 21 H 1.09004 * 117.52173 * 107.47807 * 20 19 17 22 22 C 1.52999 * 117.50174 * 252.51172 * 20 19 17 23 23 C 1.53176 * 109.54103 * 248.62019 * 22 20 19 24 24 C 1.53095 * 109.16286 * 183.14851 * 23 22 20 25 25 O 1.42903 * 109.41530 * 57.61206 * 24 23 22 26 26 C 1.42906 * 114.09431 * 298.84283 * 25 24 23 27 27 C 1.53095 * 109.41780 * 61.15768 * 26 25 24 28 28 C 1.47154 * 118.04011 * 50.78869 * 14 13 11 29 29 C 1.53711 * 108.15954 * 309.15885 * 28 14 13 30 30 O 1.42954 * 109.14980 * 52.53199 * 29 28 14 31 31 H 0.97000 * 119.99530 * 359.97438 * 1 2 3 32 32 H 0.97000 * 120.00009 * 0.02562 * 9 7 2 33 33 H 1.09000 * 109.46830 * 60.00479 * 10 9 7 34 34 H 1.08995 * 109.47154 * 300.00621 * 10 9 7 35 35 H 1.09004 * 109.67913 * 68.05134 * 13 11 10 36 36 H 1.08999 * 109.68194 * 307.49783 * 13 11 10 37 37 H 1.08999 * 117.49837 * 145.01792 * 19 17 15 38 38 H 1.09008 * 117.50035 * 0.02562 * 19 17 15 39 39 H 1.08994 * 109.61250 * 8.83967 * 22 20 19 40 40 H 1.09001 * 109.52789 * 303.05792 * 23 22 20 41 41 H 1.09007 * 109.52321 * 63.24507 * 23 22 20 42 42 H 1.08997 * 109.47843 * 177.59528 * 24 23 22 43 43 H 1.08997 * 109.48336 * 297.62823 * 24 23 22 44 44 H 1.08998 * 109.48318 * 301.17291 * 26 25 24 45 45 H 1.09003 * 109.48246 * 181.13928 * 26 25 24 46 46 H 1.08998 * 109.52174 * 182.48760 * 27 26 25 47 47 H 1.08997 * 109.57369 * 62.32549 * 27 26 25 48 48 H 1.08998 * 109.67934 * 68.93233 * 28 14 13 49 49 H 1.08998 * 109.68699 * 189.48506 * 28 14 13 50 50 H 1.09007 * 109.65339 * 292.56550 * 29 28 14 51 51 H 1.08994 * 109.48523 * 172.39876 * 29 28 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3796 -1.2022 -0.0011 10 6 4.1122 -2.4709 -0.0011 11 6 5.6164 -2.1913 -0.0011 12 1 5.8664 -1.5439 -0.8416 13 6 6.3828 -3.5130 -0.1271 14 7 7.8158 -3.2383 0.0632 15 6 8.7312 -3.6860 -0.8190 16 8 8.3782 -4.3252 -1.7873 17 6 10.1933 -3.3924 -0.6021 18 1 10.5185 -3.3673 0.4380 19 6 10.8732 -2.4308 -1.5788 20 6 11.1828 -3.9279 -1.6389 21 1 10.7763 -4.4930 -2.4777 22 6 12.5532 -4.3867 -1.1365 23 6 13.3916 -4.8846 -2.3178 24 6 14.7300 -5.4142 -1.7964 25 8 14.4915 -6.4538 -0.8453 26 6 13.7524 -6.0350 0.3038 27 6 12.3747 -5.5303 -0.1333 28 6 8.2207 -2.4658 1.2484 29 6 7.3642 -1.1907 1.3046 30 8 5.9828 -1.5496 1.2227 31 1 -0.4849 0.8401 0.0004 32 1 3.8646 -0.3621 -0.0007 33 1 3.8485 -3.0426 -0.8909 34 1 3.8491 -3.0423 0.8890 35 1 6.2190 -3.9394 -1.1168 36 1 6.0383 -4.2113 0.6357 37 1 11.6458 -1.7727 -1.1813 38 1 10.2629 -2.0102 -2.3781 39 1 13.0633 -3.5536 -0.6529 40 1 12.8584 -5.6847 -2.8314 41 1 13.5703 -4.0619 -3.0102 42 1 15.3135 -5.8092 -2.6280 43 1 15.2804 -4.6038 -1.3185 44 1 14.2899 -5.2326 0.8091 45 1 13.6317 -6.8772 0.9852 46 1 11.8262 -5.1694 0.7367 47 1 11.8201 -6.3430 -0.6023 48 1 8.0581 -3.0605 2.1473 49 1 9.2745 -2.1985 1.1701 50 1 7.6212 -0.5392 0.4693 51 1 7.5498 -0.6691 2.2435 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717174019.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:02 Heat of formation + Delta-G solvation = -112.204961 kcal Electronic energy + Delta-G solvation = -29832.795666 eV Core-core repulsion = 25732.279313 eV Total energy + Delta-G solvation = -4100.516352 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.69857 -40.51994 -39.66861 -37.76477 -36.84605 -35.79695 -34.10791 -33.84471 -32.29800 -31.99480 -29.47600 -28.05902 -26.49150 -25.13515 -24.65986 -24.35750 -23.41298 -22.41597 -22.00140 -20.95019 -19.94528 -19.78002 -18.58468 -17.79322 -17.22700 -17.09383 -16.89927 -16.72708 -16.45182 -16.21761 -15.92721 -15.76775 -15.47557 -15.44066 -14.89828 -14.75046 -14.68712 -14.53023 -14.27255 -14.03556 -13.78289 -13.62619 -13.28483 -13.09009 -12.87878 -12.86964 -12.64607 -12.36041 -12.27656 -12.06528 -12.05966 -11.86454 -11.83194 -11.69922 -11.61516 -11.24758 -11.10244 -11.02991 -10.92109 -10.81784 -10.41566 -9.67453 -9.34201 -8.04601 -5.38690 1.35762 1.36367 1.39876 1.48207 1.71404 2.47244 2.69191 2.76172 3.01867 3.26878 3.27950 3.37989 3.60581 3.66657 3.83302 3.84933 3.92025 3.96087 4.02546 4.05584 4.11811 4.16401 4.21779 4.25666 4.36383 4.37151 4.43797 4.47174 4.61037 4.62917 4.69573 4.72675 4.82128 4.83545 4.85256 4.85459 4.90078 4.94908 4.97498 5.02486 5.17003 5.19194 5.23197 5.25873 5.47897 5.71430 6.15900 6.19891 6.25676 6.31878 7.01873 7.04374 7.79057 7.99560 9.16580 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.029720 B = 0.001982 C = 0.001971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.910995 B =14122.010640 C =14199.661454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.982 5.982 2 C -0.064 4.064 3 Si 0.957 3.043 4 H -0.278 1.278 5 H -0.292 1.292 6 H -0.253 1.253 7 C -0.238 4.238 8 H 0.058 0.942 9 N -0.753 5.753 10 C 0.162 3.838 11 C 0.087 3.913 12 H 0.056 0.944 13 C 0.093 3.907 14 N -0.611 5.611 15 C 0.538 3.462 16 O -0.587 6.587 17 C -0.188 4.188 18 H 0.156 0.844 19 C -0.131 4.131 20 C -0.114 4.114 21 H 0.087 0.913 22 C -0.050 4.050 23 C -0.148 4.148 24 C 0.057 3.943 25 O -0.411 6.411 26 C 0.058 3.942 27 C -0.149 4.149 28 C 0.075 3.925 29 C 0.036 3.964 30 O -0.389 6.389 31 H 0.259 0.741 32 H 0.367 0.633 33 H 0.047 0.953 34 H 0.034 0.966 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.139 0.861 38 H 0.084 0.916 39 H 0.098 0.902 40 H 0.054 0.946 41 H 0.088 0.912 42 H 0.099 0.901 43 H 0.066 0.934 44 H 0.068 0.932 45 H 0.096 0.904 46 H 0.086 0.914 47 H 0.049 0.951 48 H 0.090 0.910 49 H 0.131 0.869 50 H 0.055 0.945 51 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 37.568 -6.283 2.288 38.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.632 5.632 2 C -0.255 4.255 3 Si 0.784 3.216 4 H -0.204 1.204 5 H -0.219 1.219 6 H -0.178 1.178 7 C -0.369 4.369 8 H 0.076 0.924 9 N -0.399 5.399 10 C 0.035 3.965 11 C 0.028 3.972 12 H 0.074 0.926 13 C -0.031 4.031 14 N -0.344 5.344 15 C 0.328 3.672 16 O -0.467 6.467 17 C -0.208 4.208 18 H 0.174 0.826 19 C -0.168 4.168 20 C -0.132 4.132 21 H 0.105 0.895 22 C -0.069 4.069 23 C -0.186 4.186 24 C -0.019 4.019 25 O -0.331 6.331 26 C -0.019 4.019 27 C -0.186 4.186 28 C -0.046 4.046 29 C -0.041 4.041 30 O -0.308 6.308 31 H 0.068 0.932 32 H 0.200 0.800 33 H 0.065 0.935 34 H 0.052 0.948 35 H 0.106 0.894 36 H 0.103 0.897 37 H 0.157 0.843 38 H 0.102 0.898 39 H 0.116 0.884 40 H 0.073 0.927 41 H 0.107 0.893 42 H 0.117 0.883 43 H 0.085 0.915 44 H 0.086 0.914 45 H 0.114 0.886 46 H 0.105 0.895 47 H 0.068 0.932 48 H 0.109 0.891 49 H 0.149 0.851 50 H 0.074 0.926 51 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 37.117 -6.884 1.917 37.798 hybrid contribution -0.760 0.924 -0.392 1.259 sum 36.356 -5.960 1.525 36.873 Atomic orbital electron populations 1.69891 1.07058 1.26771 1.59493 1.25528 0.96198 1.01365 1.02444 0.85369 0.78682 0.79451 0.78097 1.20383 1.21863 1.17772 1.19047 0.82485 0.93699 1.41641 0.92371 1.42548 1.02513 1.03846 1.90947 1.20737 0.87969 0.88321 0.99433 1.22459 0.94174 0.93241 0.87319 0.92606 1.22051 0.80389 0.96793 1.03871 1.48185 1.06025 1.54657 1.25521 1.20430 0.88229 0.77553 0.80952 1.90681 1.82259 1.42171 1.31599 1.22299 0.88325 1.09955 1.00221 0.82637 1.23207 1.01910 0.92456 0.99218 1.22327 0.94917 0.97047 0.98948 0.89457 1.20796 0.92243 0.98113 0.95713 1.22210 0.96644 1.01517 0.98210 1.22716 0.95928 0.90912 0.92329 1.87915 1.74979 1.37377 1.32782 1.22713 0.90795 1.00925 0.87421 1.22213 0.98116 0.98334 0.99976 1.22818 1.01744 0.92703 0.87368 1.23359 0.80509 0.95861 1.04379 1.88086 1.26895 1.78569 1.37230 0.93241 0.79976 0.93532 0.94756 0.89384 0.89676 0.84283 0.89775 0.88362 0.92740 0.89336 0.88329 0.91530 0.91416 0.88552 0.89524 0.93171 0.89144 0.85087 0.92644 0.85130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -64.10 13.97 21.65 0.30 -63.80 16 2 C -0.06 -3.86 5.50 84.86 0.47 -3.40 16 3 Si 0.96 46.62 27.74 68.60 1.90 48.53 16 4 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 5 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 6 H -0.25 -11.31 6.52 99.48 0.65 -10.66 16 7 C -0.24 -14.08 10.47 84.03 0.88 -13.20 16 8 H 0.06 3.74 8.06 -2.91 -0.02 3.71 16 9 N -0.75 -36.99 5.36 -343.46 -1.84 -38.83 16 10 C 0.16 6.44 5.93 86.38 0.51 6.96 16 11 C 0.09 2.74 2.81 30.69 0.09 2.82 16 12 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 13 C 0.09 2.51 5.92 86.36 0.51 3.02 16 14 N -0.61 -13.31 3.01 -816.54 -2.46 -15.77 16 15 C 0.54 12.54 7.50 87.66 0.66 13.19 16 16 O -0.59 -19.21 15.73 -3.00 -0.05 -19.26 16 17 C -0.19 -2.51 4.21 -11.54 -0.05 -2.56 16 18 H 0.16 1.06 6.43 -2.39 -0.02 1.05 16 19 C -0.13 -1.41 9.88 30.59 0.30 -1.11 16 20 C -0.11 -1.55 4.67 -10.80 -0.05 -1.60 16 21 H 0.09 1.79 7.64 -2.38 -0.02 1.77 16 22 C -0.05 -0.47 2.42 -10.68 -0.03 -0.49 16 23 C -0.15 -1.51 5.41 30.69 0.17 -1.35 16 24 C 0.06 0.56 6.84 72.01 0.49 1.05 16 25 O -0.41 -6.17 10.77 -148.98 -1.60 -7.77 16 26 C 0.06 0.58 6.84 72.01 0.49 1.08 16 27 C -0.15 -1.58 5.22 30.69 0.16 -1.42 16 28 C 0.08 1.05 6.51 86.49 0.56 1.61 16 29 C 0.04 0.66 7.00 72.22 0.51 1.17 16 30 O -0.39 -11.73 10.33 -148.98 -1.54 -13.27 16 31 H 0.26 16.02 8.31 -92.71 -0.77 15.25 16 32 H 0.37 17.41 5.53 -92.71 -0.51 16.89 16 33 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.09 2.65 7.08 -2.38 -0.02 2.63 16 36 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 37 H 0.14 0.60 8.05 -2.39 -0.02 0.58 16 38 H 0.08 1.24 8.14 -2.38 -0.02 1.22 16 39 H 0.10 0.50 7.91 -2.39 -0.02 0.48 16 40 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.09 0.68 8.14 -2.38 -0.02 0.66 16 42 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 44 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 45 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 46 H 0.09 0.68 7.45 -2.39 -0.02 0.66 16 47 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 48 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 49 H 0.13 0.84 5.82 -2.39 -0.01 0.83 16 50 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 51 H 0.13 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -81.00 399.17 0.73 -80.27 By element: Atomic # 1 Polarization: 23.79 SS G_CDS: 0.34 Total: 24.13 kcal Atomic # 6 Polarization: 0.10 SS G_CDS: 5.67 Total: 5.77 kcal Atomic # 7 Polarization: -114.40 SS G_CDS: -4.00 Total: -118.40 kcal Atomic # 8 Polarization: -37.11 SS G_CDS: -3.19 Total: -40.30 kcal Atomic # 14 Polarization: 46.62 SS G_CDS: 1.90 Total: 48.53 kcal Total: -81.00 0.73 -80.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717174019.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.937 kcal (2) G-P(sol) polarization free energy of solvation -80.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds