Wall clock time and date at job start Tue Mar 31 2020 21:27:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.33662 * 125.79953 * 2 1 4 4 C 1.34211 * 110.90601 * 180.28672 * 3 2 1 5 5 C 1.50700 * 125.43664 * 179.72293 * 4 3 2 6 6 C 1.53004 * 109.47047 * 240.00203 * 5 4 3 7 7 C 1.52998 * 109.47061 * 0.02562 * 5 4 3 8 8 C 1.52995 * 109.46789 * 120.00440 * 5 4 3 9 9 C 1.34180 * 109.12382 * 359.72898 * 4 3 2 10 10 C 1.36408 * 125.80231 * 179.81265 * 2 1 3 11 11 C 1.47379 * 127.19431 * 359.97438 * 10 2 1 12 12 O 1.21620 * 119.99776 * 34.76711 * 11 10 2 13 13 N 1.34775 * 120.00020 * 214.76078 * 11 10 2 14 14 C 1.46495 * 120.00263 * 355.64865 * 13 11 10 15 15 C 1.46505 * 119.99589 * 175.65332 * 13 11 10 16 16 C 1.52999 * 109.47476 * 90.00232 * 15 13 11 17 17 H 1.08995 * 109.47163 * 59.99666 * 16 15 13 18 18 O 1.42900 * 109.46790 * 299.99365 * 16 15 13 19 19 C 1.52997 * 109.47061 * 179.97438 * 16 15 13 20 20 N 1.46501 * 109.47191 * 184.99864 * 19 16 15 21 21 C 1.36936 * 119.99970 * 179.72693 * 20 19 16 22 22 H 1.07993 * 120.00053 * 0.27209 * 21 20 19 23 23 C 1.38814 * 119.99529 * 180.27636 * 21 20 19 24 24 N 1.31621 * 120.00158 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99793 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47259 * 59.99706 * 25 23 21 27 27 H 1.48496 * 109.47466 * 179.97438 * 25 23 21 28 28 H 1.48508 * 109.47082 * 299.99788 * 25 23 21 29 29 H 1.09005 * 109.46817 * 270.18740 * 1 2 3 30 30 H 1.08995 * 109.47233 * 30.18579 * 1 2 3 31 31 H 1.09002 * 109.46882 * 150.18709 * 1 2 3 32 32 H 1.09001 * 109.46874 * 60.00377 * 6 5 4 33 33 H 1.09001 * 109.46536 * 179.97438 * 6 5 4 34 34 H 1.08996 * 109.47304 * 300.00143 * 6 5 4 35 35 H 1.09007 * 109.46940 * 59.99822 * 7 5 4 36 36 H 1.09002 * 109.46822 * 179.97438 * 7 5 4 37 37 H 1.08992 * 109.47479 * 299.99871 * 7 5 4 38 38 H 1.09000 * 109.47723 * 60.00201 * 8 5 4 39 39 H 1.09002 * 109.47229 * 179.97438 * 8 5 4 40 40 H 1.09000 * 109.47602 * 299.99740 * 8 5 4 41 41 H 1.07998 * 127.02020 * 180.02562 * 9 4 3 42 42 H 1.09001 * 109.47302 * 275.35877 * 14 13 11 43 43 H 1.09004 * 109.47071 * 35.35981 * 14 13 11 44 44 H 1.09001 * 109.47334 * 155.35586 * 14 13 11 45 45 H 1.09002 * 109.47016 * 329.99266 * 15 13 11 46 46 H 1.08999 * 109.46383 * 210.00288 * 15 13 11 47 47 H 0.96698 * 114.00523 * 300.00374 * 18 16 15 48 48 H 1.09005 * 109.46924 * 64.99778 * 19 16 15 49 49 H 1.08994 * 109.47307 * 304.99853 * 19 16 15 50 50 H 0.96996 * 119.99746 * 359.97438 * 20 19 16 51 51 H 0.96999 * 119.99733 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.2889 1.0841 0.0000 4 6 3.5859 0.7391 -0.0063 5 6 4.7459 1.7012 -0.0141 6 6 5.5922 1.4694 -1.2675 7 6 4.2176 3.1370 -0.0132 8 6 5.6055 1.4736 1.2309 9 6 3.6849 -0.5990 -0.0046 10 6 2.3050 -1.1063 0.0036 11 6 1.8741 -2.5157 0.0088 12 8 0.8686 -2.8462 -0.5903 13 7 2.5942 -3.4381 0.6772 14 6 3.8555 -3.0589 1.3187 15 6 2.1157 -4.8202 0.7623 16 6 2.6622 -5.6229 -0.4200 17 1 3.7518 -5.6134 -0.3930 18 8 2.2109 -5.0371 -1.6428 19 6 2.1629 -7.0664 -0.3308 20 7 2.7806 -7.8634 -1.3936 21 6 2.4863 -9.1957 -1.5092 22 1 1.7955 -9.6580 -0.8198 23 6 3.0761 -9.9521 -2.5127 24 7 3.9177 -9.3886 -3.3533 25 14 2.6741 -11.7695 -2.6711 26 1 1.2173 -11.9356 -2.9057 27 1 3.4278 -12.3455 -3.8135 28 1 3.0573 -12.4720 -1.4201 29 1 -0.3633 0.0034 1.0277 30 1 -0.3633 0.8883 -0.5167 31 1 -0.3633 -0.8917 -0.5109 32 1 4.9798 1.6315 -2.1545 33 1 6.4309 2.1656 -1.2733 34 1 5.9686 0.4465 -1.2678 35 1 3.6148 3.3018 0.8800 36 1 5.0566 3.8328 -0.0184 37 1 3.6050 3.2994 -0.8999 38 1 5.9819 0.4507 1.2307 39 1 6.4447 2.1691 1.2251 40 1 5.0026 1.6387 2.1239 41 1 4.5928 -1.1839 -0.0080 42 1 4.6626 -3.1028 0.5874 43 1 3.7738 -2.0446 1.7093 44 1 4.0685 -3.7472 2.1366 45 1 1.0260 -4.8297 0.7353 46 1 2.4599 -5.2670 1.6950 47 1 1.2487 -5.0120 -1.7353 48 1 1.0792 -7.0838 -0.4467 49 1 2.4313 -7.4843 0.6394 50 1 3.4008 -7.4481 -2.0130 51 1 4.3301 -9.9172 -4.0542 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734528607.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:27:44 Heat of formation + Delta-G solvation = -68.664260 kcal Electronic energy + Delta-G solvation = -30166.428555 eV Core-core repulsion = 26067.800269 eV Total energy + Delta-G solvation = -4098.628286 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.85828 -39.70275 -37.39997 -37.10899 -35.25042 -33.93970 -33.18931 -31.63598 -31.19837 -29.40218 -27.77345 -27.69468 -27.16324 -26.73453 -25.37113 -23.28360 -22.34096 -21.55764 -21.03629 -20.35755 -18.33314 -17.21101 -17.10195 -16.64508 -16.42702 -16.17986 -15.73031 -15.10164 -14.96576 -14.57901 -14.44840 -14.40295 -14.32392 -13.66210 -13.64082 -13.38761 -13.24911 -13.14229 -12.88097 -12.78453 -12.70536 -12.60949 -12.49542 -12.22170 -12.10347 -12.08311 -12.06599 -11.55791 -11.45246 -11.41605 -11.20997 -10.89741 -10.76564 -10.58588 -10.14937 -10.00725 -9.72879 -9.69723 -9.51681 -8.84479 -8.60913 -8.38294 -6.86938 -5.70129 -2.99389 1.31400 1.90170 2.48470 3.02309 3.16484 3.47236 3.51127 3.52735 4.05634 4.36457 4.48966 4.52044 4.62157 4.62376 4.78567 4.92407 4.99513 5.06471 5.10130 5.16727 5.19695 5.23582 5.26889 5.32111 5.34462 5.38519 5.43999 5.44795 5.47801 5.58579 5.59326 5.60659 5.65867 5.71916 5.72205 5.81217 5.85366 5.88056 5.99998 6.07212 6.16180 6.30464 6.52572 6.59071 6.81257 6.91899 7.39972 7.72571 8.23284 8.32555 8.48393 9.59198 10.17970 10.53665 11.52314 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.019463 B = 0.002224 C = 0.002122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.250010 B =12584.980938 C =13193.681905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.062 3.938 3 O -0.171 6.171 4 C -0.002 4.002 5 C 0.014 3.986 6 C -0.142 4.142 7 C -0.143 4.143 8 C -0.140 4.140 9 C -0.179 4.179 10 C -0.229 4.229 11 C 0.596 3.404 12 O -0.533 6.533 13 N -0.601 5.601 14 C 0.076 3.924 15 C 0.087 3.913 16 C 0.087 3.913 17 H 0.094 0.906 18 O -0.547 6.547 19 C 0.126 3.874 20 N -0.725 5.725 21 C -0.242 4.242 22 H 0.069 0.931 23 C -0.014 4.014 24 N -0.931 5.931 25 Si 0.908 3.092 26 H -0.286 1.286 27 H -0.291 1.291 28 H -0.286 1.286 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.109 0.891 32 H 0.061 0.939 33 H 0.067 0.933 34 H 0.063 0.937 35 H 0.060 0.940 36 H 0.063 0.937 37 H 0.060 0.940 38 H 0.063 0.937 39 H 0.067 0.933 40 H 0.060 0.940 41 H 0.157 0.843 42 H 0.056 0.944 43 H 0.074 0.926 44 H 0.072 0.928 45 H 0.086 0.914 46 H 0.085 0.915 47 H 0.374 0.626 48 H 0.021 0.979 49 H 0.024 0.976 50 H 0.388 0.612 51 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.091 28.091 12.868 30.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.009 3.991 3 O -0.068 6.068 4 C -0.050 4.050 5 C 0.014 3.986 6 C -0.199 4.199 7 C -0.201 4.201 8 C -0.197 4.197 9 C -0.198 4.198 10 C -0.234 4.234 11 C 0.386 3.614 12 O -0.411 6.411 13 N -0.333 5.333 14 C -0.067 4.067 15 C -0.036 4.036 16 C 0.026 3.974 17 H 0.112 0.888 18 O -0.352 6.352 19 C -0.003 4.003 20 N -0.370 5.370 21 C -0.373 4.373 22 H 0.087 0.913 23 C -0.210 4.210 24 N -0.579 5.579 25 Si 0.739 3.261 26 H -0.213 1.213 27 H -0.217 1.217 28 H -0.213 1.213 29 H 0.101 0.899 30 H 0.097 0.903 31 H 0.127 0.873 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.082 0.918 39 H 0.086 0.914 40 H 0.079 0.921 41 H 0.174 0.826 42 H 0.075 0.925 43 H 0.093 0.907 44 H 0.090 0.910 45 H 0.105 0.895 46 H 0.104 0.896 47 H 0.222 0.778 48 H 0.039 0.961 49 H 0.041 0.959 50 H 0.222 0.778 51 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 1.051 28.098 12.479 30.762 hybrid contribution -0.287 -1.290 -0.156 1.331 sum 0.764 26.807 12.323 29.514 Atomic orbital electron populations 1.20580 0.84068 1.05472 1.03905 1.22629 0.93775 0.83008 0.99674 1.83675 1.16503 1.34915 1.71693 1.22111 0.82242 0.94321 1.06364 1.19164 0.89240 0.92818 0.97378 1.21947 0.99288 1.02650 0.95987 1.21852 1.01307 0.94149 1.02763 1.21934 0.99179 1.02614 0.95995 1.22655 0.96635 0.93257 1.07276 1.21074 0.93372 0.93819 1.15104 1.17140 0.82726 0.83563 0.78019 1.90721 1.26560 1.81056 1.42757 1.47462 1.23028 1.09238 1.53602 1.22027 0.85537 1.01552 0.97580 1.22300 1.01010 0.80553 0.99785 1.22469 0.99468 0.91606 0.83888 0.88802 1.86546 1.27372 1.82918 1.38321 1.21245 0.96151 0.89703 0.93171 1.42245 1.53689 1.06915 1.34144 1.19182 1.21414 0.85441 1.11276 0.91328 1.24765 0.99790 0.98218 0.98239 1.69676 1.33130 1.35313 1.19786 0.86254 0.77626 0.85170 0.77031 1.21278 1.21683 1.21305 0.89867 0.90250 0.87263 0.92024 0.91367 0.91771 0.92119 0.91763 0.92053 0.91834 0.91368 0.92129 0.82585 0.92519 0.90728 0.90968 0.89534 0.89629 0.77834 0.96133 0.95863 0.77755 0.93478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.78 10.21 36.01 0.37 -0.42 16 2 C 0.06 0.72 7.37 -34.96 -0.26 0.46 16 3 O -0.17 -1.89 9.91 7.64 0.08 -1.82 16 4 C 0.00 -0.02 5.67 -35.74 -0.20 -0.22 16 5 C 0.01 0.10 0.92 -155.66 -0.14 -0.04 16 6 C -0.14 -0.94 8.34 37.16 0.31 -0.63 16 7 C -0.14 -0.90 8.01 37.16 0.30 -0.61 16 8 C -0.14 -0.78 8.34 37.15 0.31 -0.47 16 9 C -0.18 -1.92 7.96 -37.45 -0.30 -2.22 16 10 C -0.23 -2.96 5.54 -103.28 -0.57 -3.53 16 11 C 0.60 8.86 7.07 -12.54 -0.09 8.77 16 12 O -0.53 -9.20 13.57 -7.94 -0.11 -9.31 16 13 N -0.60 -7.89 2.83 -182.86 -0.52 -8.40 16 14 C 0.08 0.74 9.07 59.84 0.54 1.28 16 15 C 0.09 1.19 5.18 -4.04 -0.02 1.17 16 16 C 0.09 1.52 3.27 -26.73 -0.09 1.43 16 17 H 0.09 1.72 8.14 -51.93 -0.42 1.29 16 18 O -0.55 -10.93 12.00 -48.43 -0.58 -11.51 16 19 C 0.13 2.61 5.90 -4.04 -0.02 2.58 16 20 N -0.73 -19.38 5.55 -59.91 -0.33 -19.71 16 21 C -0.24 -7.04 9.99 -15.06 -0.15 -7.19 16 22 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 23 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 24 N -0.93 -29.31 13.06 55.49 0.72 -28.58 16 25 Si 0.91 23.01 29.55 -169.99 -5.02 17.99 16 26 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 27 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 28 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 29 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.11 1.20 6.55 -51.93 -0.34 0.86 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.06 0.44 7.97 -51.93 -0.41 0.03 16 35 H 0.06 0.39 8.14 -51.92 -0.42 -0.03 16 36 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 37 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 38 H 0.06 0.35 7.97 -51.93 -0.41 -0.07 16 39 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 40 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.16 1.46 6.40 -52.49 -0.34 1.13 16 42 H 0.06 0.55 7.36 -51.93 -0.38 0.17 16 43 H 0.07 0.65 5.81 -51.93 -0.30 0.34 16 44 H 0.07 0.58 7.83 -51.93 -0.41 0.17 16 45 H 0.09 1.23 7.49 -51.93 -0.39 0.84 16 46 H 0.09 0.97 7.86 -51.93 -0.41 0.56 16 47 H 0.37 7.06 8.32 45.56 0.38 7.44 16 48 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 49 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 50 H 0.39 11.19 7.67 -40.82 -0.31 10.87 16 51 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 LS Contribution 411.20 15.07 6.20 6.20 Total: -1.00 -35.47 411.20 -7.62 -43.09 By element: Atomic # 1 Polarization: 20.14 SS G_CDS: -7.94 Total: 12.20 kcal Atomic # 6 Polarization: -0.02 SS G_CDS: -0.11 Total: -0.14 kcal Atomic # 7 Polarization: -56.57 SS G_CDS: -0.12 Total: -56.70 kcal Atomic # 8 Polarization: -22.02 SS G_CDS: -0.61 Total: -22.64 kcal Atomic # 14 Polarization: 23.01 SS G_CDS: -5.02 Total: 17.99 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -35.47 -7.62 -43.09 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734528607.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.572 kcal (2) G-P(sol) polarization free energy of solvation -35.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds