Wall clock time and date at job start Tue Mar 31 2020 21:27:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.46909 * 2 1 4 4 C 1.53009 * 109.46938 * 174.99924 * 3 2 1 5 5 C 1.53000 * 109.46991 * 185.00106 * 4 3 2 6 6 N 1.46493 * 109.47520 * 294.99509 * 3 2 1 7 7 C 1.46767 * 124.34719 * 119.99758 * 6 3 2 8 8 C 1.54478 * 105.47439 * 163.01098 * 7 6 3 9 9 H 1.08994 * 110.97378 * 143.57490 * 8 7 6 10 10 C 1.50707 * 110.96746 * 267.30224 * 8 7 6 11 11 O 1.21278 * 119.99924 * 356.90633 * 10 8 7 12 12 N 1.34780 * 119.99690 * 176.91055 * 10 8 7 13 13 C 1.47024 * 125.64847 * 359.68630 * 12 10 8 14 14 C 1.54327 * 107.26774 * 179.20685 * 13 12 10 15 15 C 1.55155 * 102.94571 * 337.80617 * 14 13 12 16 16 O 1.42901 * 111.03608 * 277.41649 * 15 14 13 17 17 C 1.50695 * 111.00698 * 153.57332 * 15 14 13 18 18 H 1.08000 * 120.00647 * 247.80749 * 17 15 14 19 19 C 1.37879 * 119.99482 * 67.80372 * 17 15 14 20 20 N 1.31505 * 120.00306 * 0.02562 * 19 17 15 21 21 Si 1.86809 * 119.99801 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.46937 * 90.00251 * 21 19 17 23 23 H 1.48502 * 109.46895 * 210.00277 * 21 19 17 24 24 H 1.48500 * 109.46879 * 330.00223 * 21 19 17 25 25 C 1.47426 * 125.64645 * 179.97438 * 12 10 8 26 26 C 1.54628 * 101.79708 * 25.43228 * 8 7 6 27 27 C 1.34413 * 124.35232 * 300.03144 * 6 3 2 28 28 O 1.21282 * 124.94421 * 0.37595 * 27 6 3 29 29 H 1.08995 * 109.47371 * 300.00223 * 1 2 3 30 30 H 1.08999 * 109.47218 * 59.99977 * 1 2 3 31 31 H 1.09000 * 109.47062 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47148 * 240.00070 * 2 1 3 33 33 H 1.08999 * 109.47218 * 120.00023 * 2 1 3 34 34 H 1.08997 * 109.46891 * 55.00351 * 3 2 1 35 35 H 1.09005 * 109.46698 * 305.00211 * 4 3 2 36 36 H 1.08999 * 109.47232 * 64.99850 * 4 3 2 37 37 H 1.08994 * 109.47254 * 300.00053 * 5 4 3 38 38 H 1.09000 * 109.46626 * 60.00406 * 5 4 3 39 39 H 1.09003 * 109.46583 * 179.97438 * 5 4 3 40 40 H 1.09000 * 110.24412 * 44.00957 * 7 6 3 41 41 H 1.08998 * 110.24658 * 282.00958 * 7 6 3 42 42 H 1.08995 * 109.88316 * 298.62177 * 13 12 10 43 43 H 1.09002 * 109.88101 * 59.79072 * 13 12 10 44 44 H 1.08999 * 110.71564 * 219.44370 * 14 13 12 45 45 H 1.09000 * 110.86856 * 96.24526 * 14 13 12 46 46 H 0.96692 * 113.99817 * 292.20856 * 16 15 14 47 47 H 0.97006 * 120.00369 * 179.97438 * 20 19 17 48 48 H 1.09002 * 110.36518 * 322.69812 * 25 12 10 49 49 H 1.08997 * 110.36787 * 85.02191 * 25 12 10 50 50 H 1.09006 * 110.48381 * 93.86727 * 26 8 7 51 51 H 1.08996 * 110.49086 * 216.50425 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5648 1.4444 0.1258 5 6 4.0645 2.8850 0.2512 6 7 1.6525 2.0975 -1.2518 7 6 0.8076 3.2948 -1.3328 8 6 1.0286 3.8598 -2.7535 9 1 0.1051 4.2759 -3.1560 10 6 2.1284 4.8902 -2.7590 11 8 2.6654 5.2095 -1.7195 12 7 2.5151 5.4569 -3.9191 13 6 1.9565 5.1593 -5.2461 14 6 2.6903 6.0576 -6.2641 15 6 3.2254 7.2167 -5.3823 16 8 2.2144 8.2021 -5.1614 17 6 4.4556 7.8367 -5.9933 18 1 5.4141 7.7257 -5.5081 19 6 4.3574 8.5455 -7.1718 20 7 3.1903 8.6811 -7.7624 21 14 5.8825 9.3135 -7.9296 22 1 6.5174 8.3422 -8.8563 23 1 5.5000 10.5365 -8.6801 24 1 6.8422 9.6722 -6.8547 25 6 3.5723 6.4735 -4.0683 26 6 1.4522 2.5944 -3.5346 27 6 2.0246 1.6788 -2.4736 28 8 2.7181 0.7086 -2.6942 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6053 1.9815 0.8418 35 1 3.8570 0.8800 1.0114 36 1 4.0030 0.9836 -0.7596 37 1 3.7722 3.4493 -0.6343 38 1 3.6263 3.3457 1.1366 39 1 5.1508 2.8862 0.3412 40 1 1.1153 4.0250 -0.5844 41 1 -0.2397 3.0277 -1.1919 42 1 2.1216 4.1101 -5.4911 43 1 0.8894 5.3813 -5.2574 44 1 1.9971 6.4338 -7.0164 45 1 3.5131 5.5194 -6.7346 46 1 1.9641 8.6936 -5.9556 47 1 3.1212 9.1801 -8.5913 48 1 3.5555 7.1647 -3.2257 49 1 4.5489 5.9962 -4.1491 50 1 0.5871 2.1328 -4.0109 51 1 2.2113 2.8405 -4.2770 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592843481.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:27:27 Heat of formation + Delta-G solvation = -127.036113 kcal Electronic energy + Delta-G solvation = -31647.122298 eV Core-core repulsion = 27545.962819 eV Total energy + Delta-G solvation = -4101.159479 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.08554 -39.29128 -37.40040 -36.62023 -35.53726 -34.40977 -32.19310 -32.16263 -31.23552 -29.73406 -28.34531 -27.74736 -26.54584 -25.29902 -23.35615 -22.15168 -22.00358 -21.74775 -19.76774 -18.92530 -18.88096 -17.42809 -17.20490 -16.84680 -15.84203 -15.53201 -15.28042 -15.02907 -14.68682 -14.58908 -14.40049 -14.20068 -13.84091 -13.71783 -13.33410 -13.11411 -13.07969 -12.89104 -12.66979 -12.53523 -12.48026 -12.08365 -11.80420 -11.71873 -11.68255 -11.51395 -11.37837 -11.33588 -11.17557 -11.00438 -10.91267 -10.90140 -10.81959 -10.64595 -10.53075 -10.10125 -9.57527 -9.52718 -9.40868 -8.73787 -8.68109 -8.27682 -8.07303 -6.35238 -4.42780 2.59343 2.88121 2.94896 3.16508 3.24404 3.27764 3.38962 4.20828 4.22100 4.27349 4.59543 4.61521 4.79972 4.84267 4.91705 4.95614 5.16200 5.22877 5.29375 5.32896 5.37261 5.42470 5.44694 5.50874 5.60314 5.64671 5.69739 5.74734 5.77959 5.80299 5.84868 5.93613 5.98667 6.05104 6.08835 6.18829 6.21810 6.36589 6.50173 6.58944 6.63144 6.81006 6.88902 7.12493 7.24110 7.26191 7.68387 7.92799 8.03302 8.19283 8.50293 8.59861 9.26303 9.41407 10.72447 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.022875 B = 0.002810 C = 0.002737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.736778 B = 9963.416699 C =10226.627046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.141 4.141 3 C 0.163 3.837 4 C -0.139 4.139 5 C -0.153 4.153 6 N -0.604 5.604 7 C 0.117 3.883 8 C -0.121 4.121 9 H 0.121 0.879 10 C 0.530 3.470 11 O -0.544 6.544 12 N -0.602 5.602 13 C 0.096 3.904 14 C -0.140 4.140 15 C 0.250 3.750 16 O -0.584 6.584 17 C -0.536 4.536 18 H 0.065 0.935 19 C 0.073 3.927 20 N -0.898 5.898 21 Si 0.904 3.096 22 H -0.278 1.278 23 H -0.284 1.284 24 H -0.272 1.272 25 C 0.120 3.880 26 C -0.151 4.151 27 C 0.522 3.478 28 O -0.531 6.531 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.079 0.921 33 H 0.071 0.929 34 H 0.087 0.913 35 H 0.067 0.933 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.048 0.952 39 H 0.048 0.952 40 H 0.097 0.903 41 H 0.076 0.924 42 H 0.057 0.943 43 H 0.060 0.940 44 H 0.083 0.917 45 H 0.068 0.932 46 H 0.386 0.614 47 H 0.270 0.730 48 H 0.071 0.929 49 H 0.070 0.930 50 H 0.112 0.888 51 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.077 -13.089 10.354 18.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.180 4.180 3 C 0.061 3.939 4 C -0.178 4.178 5 C -0.210 4.210 6 N -0.338 5.338 7 C -0.006 4.006 8 C -0.143 4.143 9 H 0.139 0.861 10 C 0.317 3.683 11 O -0.423 6.423 12 N -0.333 5.333 13 C -0.027 4.027 14 C -0.179 4.179 15 C 0.209 3.791 16 O -0.395 6.395 17 C -0.574 4.574 18 H 0.083 0.917 19 C -0.130 4.130 20 N -0.538 5.538 21 Si 0.731 3.269 22 H -0.204 1.204 23 H -0.210 1.210 24 H -0.197 1.197 25 C -0.001 4.001 26 C -0.192 4.192 27 C 0.309 3.691 28 O -0.408 6.408 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.098 0.902 33 H 0.089 0.911 34 H 0.105 0.895 35 H 0.086 0.914 36 H 0.095 0.905 37 H 0.092 0.908 38 H 0.068 0.932 39 H 0.067 0.933 40 H 0.116 0.884 41 H 0.094 0.906 42 H 0.075 0.925 43 H 0.079 0.921 44 H 0.102 0.898 45 H 0.087 0.913 46 H 0.238 0.762 47 H 0.080 0.920 48 H 0.090 0.910 49 H 0.089 0.911 50 H 0.130 0.870 51 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -7.473 -13.628 11.383 19.265 hybrid contribution 0.598 0.731 -1.249 1.566 sum -6.874 -12.897 10.133 17.784 Atomic orbital electron populations 1.21714 0.95648 1.01424 1.01633 1.21954 0.96246 0.96346 1.03424 1.21048 0.95072 0.92814 0.85011 1.21936 0.94666 0.98388 1.02769 1.21783 1.00351 0.95881 1.03016 1.48232 1.50610 1.28879 1.06034 1.22028 0.94511 0.87083 0.97019 1.22255 0.99977 0.94915 0.97112 0.86106 1.19690 0.83806 0.81998 0.82825 1.90649 1.56864 1.63652 1.31120 1.48545 1.37631 1.40754 1.06400 1.22290 0.98173 0.98991 0.83210 1.23216 0.99889 0.97458 0.97346 1.19561 0.86881 0.84931 0.87732 1.86091 1.59230 1.53810 1.40344 1.21475 0.94247 1.34191 1.07477 0.91660 1.24983 0.96702 0.95103 0.96180 1.69548 1.23507 1.41562 1.19140 0.86398 0.82554 0.78744 0.79200 1.20426 1.20983 1.19662 1.22394 0.89010 0.88793 0.99907 1.22500 1.03999 0.94324 0.98348 1.20722 0.79462 0.84652 0.84229 1.90679 1.38109 1.28187 1.83846 0.92926 0.92784 0.92890 0.90245 0.91065 0.89525 0.91424 0.90542 0.90800 0.93240 0.93287 0.88439 0.90566 0.92531 0.92137 0.89815 0.91294 0.76205 0.92037 0.91025 0.91143 0.86961 0.87238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.80 37.16 0.36 -0.84 16 2 C -0.14 -1.36 5.36 -26.73 -0.14 -1.51 16 3 C 0.16 1.73 2.26 -67.93 -0.15 1.57 16 4 C -0.14 -1.65 5.36 -26.73 -0.14 -1.80 16 5 C -0.15 -2.03 9.80 37.16 0.36 -1.66 16 6 N -0.60 -7.06 1.74 -164.80 -0.29 -7.34 16 7 C 0.12 1.22 6.66 -3.12 -0.02 1.20 16 8 C -0.12 -1.41 2.97 -90.14 -0.27 -1.68 16 9 H 0.12 1.13 8.14 -51.93 -0.42 0.71 16 10 C 0.53 8.83 7.18 -10.98 -0.08 8.75 16 11 O -0.54 -10.51 14.23 5.56 0.08 -10.43 16 12 N -0.60 -10.90 3.29 -170.52 -0.56 -11.46 16 13 C 0.10 1.57 6.05 -3.06 -0.02 1.55 16 14 C -0.14 -2.83 5.64 -24.90 -0.14 -2.97 16 15 C 0.25 5.76 0.89 -89.63 -0.08 5.68 16 16 O -0.58 -14.36 13.18 -35.23 -0.46 -14.82 16 17 C -0.54 -13.52 8.25 -34.44 -0.28 -13.80 16 18 H 0.07 1.65 7.77 -52.49 -0.41 1.25 16 19 C 0.07 1.81 5.30 -17.82 -0.09 1.72 16 20 N -0.90 -22.41 10.78 55.43 0.60 -21.81 16 21 Si 0.90 19.79 29.54 -169.99 -5.02 14.77 16 22 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 23 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 24 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 25 C 0.12 2.57 6.08 -2.54 -0.02 2.55 16 26 C -0.15 -1.74 5.89 -26.69 -0.16 -1.90 16 27 C 0.52 7.18 7.38 -10.81 -0.08 7.11 16 28 O -0.53 -8.96 15.02 5.56 0.08 -8.88 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.05 0.48 7.75 -51.93 -0.40 0.07 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.08 0.96 6.62 -51.93 -0.34 0.62 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.09 0.80 8.07 -51.93 -0.42 0.38 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.08 1.10 6.65 -51.93 -0.35 0.76 16 37 H 0.07 1.20 6.15 -51.93 -0.32 0.88 16 38 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.10 1.15 6.98 -51.93 -0.36 0.79 16 41 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.06 0.79 5.96 -51.93 -0.31 0.48 16 43 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 44 H 0.08 1.77 7.85 -51.93 -0.41 1.36 16 45 H 0.07 1.41 8.03 -51.93 -0.42 1.00 16 46 H 0.39 9.62 6.93 45.56 0.32 9.93 16 47 H 0.27 6.47 8.31 -40.82 -0.34 6.13 16 48 H 0.07 1.63 8.04 -51.93 -0.42 1.22 16 49 H 0.07 1.49 8.01 -51.93 -0.42 1.07 16 50 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 51 H 0.11 1.41 5.60 -51.93 -0.29 1.12 16 LS Contribution 394.08 15.07 5.94 5.94 Total: -1.00 -28.97 394.08 -8.49 -37.46 By element: Atomic # 1 Polarization: 20.52 SS G_CDS: -7.91 Total: 12.62 kcal Atomic # 6 Polarization: 4.91 SS G_CDS: -0.95 Total: 3.96 kcal Atomic # 7 Polarization: -40.37 SS G_CDS: -0.25 Total: -40.62 kcal Atomic # 8 Polarization: -33.83 SS G_CDS: -0.30 Total: -34.13 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.02 Total: 14.77 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -28.97 -8.49 -37.46 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592843481.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.575 kcal (2) G-P(sol) polarization free energy of solvation -28.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds