Wall clock time and date at job start Tue Mar 31 2020 21:27:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.46909 * 2 1 4 4 C 1.53009 * 109.46938 * 174.99924 * 3 2 1 5 5 C 1.53000 * 109.46991 * 185.00106 * 4 3 2 6 6 N 1.46493 * 109.47520 * 294.99509 * 3 2 1 7 7 C 1.46767 * 124.34719 * 119.99758 * 6 3 2 8 8 C 1.54478 * 105.47439 * 163.01098 * 7 6 3 9 9 H 1.08994 * 110.97378 * 143.57490 * 8 7 6 10 10 C 1.50707 * 110.96746 * 267.30224 * 8 7 6 11 11 O 1.21278 * 119.99924 * 356.90633 * 10 8 7 12 12 N 1.34780 * 119.99690 * 176.91055 * 10 8 7 13 13 C 1.47024 * 125.64847 * 359.68630 * 12 10 8 14 14 C 1.54327 * 107.26774 * 179.20685 * 13 12 10 15 15 C 1.55155 * 102.94571 * 337.80617 * 14 13 12 16 16 O 1.42901 * 111.03608 * 277.41649 * 15 14 13 17 17 C 1.50695 * 111.00698 * 153.57332 * 15 14 13 18 18 H 1.08000 * 120.00647 * 247.80749 * 17 15 14 19 19 C 1.37879 * 119.99482 * 67.80372 * 17 15 14 20 20 N 1.31505 * 120.00306 * 0.02562 * 19 17 15 21 21 Si 1.86809 * 119.99801 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.46937 * 90.00251 * 21 19 17 23 23 H 1.48502 * 109.46895 * 210.00277 * 21 19 17 24 24 H 1.48500 * 109.46879 * 330.00223 * 21 19 17 25 25 C 1.47426 * 125.64645 * 179.97438 * 12 10 8 26 26 C 1.54628 * 101.79708 * 25.43228 * 8 7 6 27 27 C 1.34413 * 124.35232 * 300.03144 * 6 3 2 28 28 O 1.21282 * 124.94421 * 0.37595 * 27 6 3 29 29 H 1.08995 * 109.47371 * 300.00223 * 1 2 3 30 30 H 1.08999 * 109.47218 * 59.99977 * 1 2 3 31 31 H 1.09000 * 109.47062 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47148 * 240.00070 * 2 1 3 33 33 H 1.08999 * 109.47218 * 120.00023 * 2 1 3 34 34 H 1.08997 * 109.46891 * 55.00351 * 3 2 1 35 35 H 1.09005 * 109.46698 * 305.00211 * 4 3 2 36 36 H 1.08999 * 109.47232 * 64.99850 * 4 3 2 37 37 H 1.08994 * 109.47254 * 300.00053 * 5 4 3 38 38 H 1.09000 * 109.46626 * 60.00406 * 5 4 3 39 39 H 1.09003 * 109.46583 * 179.97438 * 5 4 3 40 40 H 1.09000 * 110.24412 * 44.00957 * 7 6 3 41 41 H 1.08998 * 110.24658 * 282.00958 * 7 6 3 42 42 H 1.08995 * 109.88316 * 298.62177 * 13 12 10 43 43 H 1.09002 * 109.88101 * 59.79072 * 13 12 10 44 44 H 1.08999 * 110.71564 * 219.44370 * 14 13 12 45 45 H 1.09000 * 110.86856 * 96.24526 * 14 13 12 46 46 H 0.96692 * 113.99817 * 292.20856 * 16 15 14 47 47 H 0.97006 * 120.00369 * 179.97438 * 20 19 17 48 48 H 1.09002 * 110.36518 * 322.69812 * 25 12 10 49 49 H 1.08997 * 110.36787 * 85.02191 * 25 12 10 50 50 H 1.09006 * 110.48381 * 93.86727 * 26 8 7 51 51 H 1.08996 * 110.49086 * 216.50425 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5648 1.4444 0.1258 5 6 4.0645 2.8850 0.2512 6 7 1.6525 2.0975 -1.2518 7 6 0.8076 3.2948 -1.3328 8 6 1.0286 3.8598 -2.7535 9 1 0.1051 4.2759 -3.1560 10 6 2.1284 4.8902 -2.7590 11 8 2.6654 5.2095 -1.7195 12 7 2.5151 5.4569 -3.9191 13 6 1.9565 5.1593 -5.2461 14 6 2.6903 6.0576 -6.2641 15 6 3.2254 7.2167 -5.3823 16 8 2.2144 8.2021 -5.1614 17 6 4.4556 7.8367 -5.9933 18 1 5.4141 7.7257 -5.5081 19 6 4.3574 8.5455 -7.1718 20 7 3.1903 8.6811 -7.7624 21 14 5.8825 9.3135 -7.9296 22 1 6.5174 8.3422 -8.8563 23 1 5.5000 10.5365 -8.6801 24 1 6.8422 9.6722 -6.8547 25 6 3.5723 6.4735 -4.0683 26 6 1.4522 2.5944 -3.5346 27 6 2.0246 1.6788 -2.4736 28 8 2.7181 0.7086 -2.6942 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6053 1.9815 0.8418 35 1 3.8570 0.8800 1.0114 36 1 4.0030 0.9836 -0.7596 37 1 3.7722 3.4493 -0.6343 38 1 3.6263 3.3457 1.1366 39 1 5.1508 2.8862 0.3412 40 1 1.1153 4.0250 -0.5844 41 1 -0.2397 3.0277 -1.1919 42 1 2.1216 4.1101 -5.4911 43 1 0.8894 5.3813 -5.2574 44 1 1.9971 6.4338 -7.0164 45 1 3.5131 5.5194 -6.7346 46 1 1.9641 8.6936 -5.9556 47 1 3.1212 9.1801 -8.5913 48 1 3.5555 7.1647 -3.2257 49 1 4.5489 5.9962 -4.1491 50 1 0.5871 2.1328 -4.0109 51 1 2.2113 2.8405 -4.2770 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592843481.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:27:26 Heat of formation + Delta-G solvation = -145.142548 kcal Electronic energy + Delta-G solvation = -31647.907452 eV Core-core repulsion = 27545.962819 eV Total energy + Delta-G solvation = -4101.944633 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.12641 -40.63798 -38.94565 -37.62108 -36.56197 -36.09142 -34.13180 -33.01321 -32.35033 -31.20626 -29.94613 -28.68085 -27.58959 -26.88377 -24.68446 -23.03906 -23.00051 -22.89111 -21.49821 -20.20536 -19.89377 -19.12238 -18.51585 -17.80559 -17.08986 -16.94343 -16.69544 -16.59475 -15.99096 -15.67821 -15.57861 -15.34796 -15.16683 -14.86472 -14.72051 -14.24864 -14.01209 -13.90405 -13.87797 -13.76879 -13.61697 -13.43312 -13.26641 -13.14736 -13.07664 -12.77316 -12.59620 -12.57131 -12.48496 -12.35258 -12.27909 -12.00309 -11.89608 -11.84453 -11.76474 -11.75262 -11.29823 -10.82450 -10.62230 -10.59166 -10.13185 -9.59956 -9.53705 -8.26085 -6.39779 1.40709 1.44379 1.52614 1.57362 1.63101 2.00748 2.10363 2.39319 2.99089 3.28265 3.34767 3.49611 3.74544 3.82537 3.90175 4.02300 4.03370 4.12549 4.26661 4.33994 4.36180 4.44324 4.47952 4.55140 4.56868 4.59206 4.61468 4.63664 4.73071 4.81112 4.87447 4.88192 4.95937 4.97277 5.01142 5.11360 5.17666 5.19446 5.23490 5.28981 5.40214 5.41760 5.45397 5.54785 5.74692 5.77694 6.05929 6.20285 6.61521 6.67423 7.16391 7.20807 7.31594 7.46807 8.79978 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.022875 B = 0.002810 C = 0.002737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.736778 B = 9963.416699 C =10226.627046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.135 4.135 3 C 0.158 3.842 4 C -0.135 4.135 5 C -0.147 4.147 6 N -0.600 5.600 7 C 0.118 3.882 8 C -0.109 4.109 9 H 0.159 0.841 10 C 0.521 3.479 11 O -0.576 6.576 12 N -0.607 5.607 13 C 0.104 3.896 14 C -0.133 4.133 15 C 0.237 3.763 16 O -0.593 6.593 17 C -0.563 4.563 18 H 0.052 0.948 19 C 0.038 3.962 20 N -0.907 5.907 21 Si 0.957 3.043 22 H -0.273 1.273 23 H -0.279 1.279 24 H -0.278 1.278 25 C 0.127 3.873 26 C -0.145 4.145 27 C 0.509 3.491 28 O -0.572 6.572 29 H 0.068 0.932 30 H 0.049 0.951 31 H 0.057 0.943 32 H 0.050 0.950 33 H 0.085 0.915 34 H 0.108 0.892 35 H 0.089 0.911 36 H 0.045 0.955 37 H 0.042 0.958 38 H 0.061 0.939 39 H 0.043 0.957 40 H 0.084 0.916 41 H 0.120 0.880 42 H 0.088 0.912 43 H 0.085 0.915 44 H 0.073 0.927 45 H 0.059 0.941 46 H 0.381 0.619 47 H 0.273 0.727 48 H 0.046 0.954 49 H 0.062 0.938 50 H 0.151 0.849 51 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.359 -14.219 10.840 20.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.173 4.173 3 C 0.056 3.944 4 C -0.173 4.173 5 C -0.205 4.205 6 N -0.333 5.333 7 C -0.005 4.005 8 C -0.131 4.131 9 H 0.176 0.824 10 C 0.311 3.689 11 O -0.457 6.457 12 N -0.339 5.339 13 C -0.017 4.017 14 C -0.172 4.172 15 C 0.196 3.804 16 O -0.403 6.403 17 C -0.601 4.601 18 H 0.070 0.930 19 C -0.163 4.163 20 N -0.547 5.547 21 Si 0.783 3.217 22 H -0.199 1.199 23 H -0.204 1.204 24 H -0.203 1.203 25 C 0.004 3.996 26 C -0.185 4.185 27 C 0.298 3.702 28 O -0.453 6.453 29 H 0.087 0.913 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.104 0.896 34 H 0.126 0.874 35 H 0.108 0.892 36 H 0.064 0.936 37 H 0.061 0.939 38 H 0.080 0.920 39 H 0.062 0.938 40 H 0.102 0.898 41 H 0.137 0.863 42 H 0.106 0.894 43 H 0.103 0.897 44 H 0.092 0.908 45 H 0.078 0.922 46 H 0.233 0.767 47 H 0.082 0.918 48 H 0.065 0.935 49 H 0.080 0.920 50 H 0.169 0.831 51 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -9.788 -14.758 11.882 21.326 hybrid contribution 1.376 1.127 -1.328 2.219 sum -8.412 -13.632 10.555 19.183 Atomic orbital electron populations 1.21682 0.94133 1.01978 1.02161 1.21881 0.97487 0.95262 1.02707 1.21207 0.94062 0.93827 0.85295 1.21893 0.95843 0.97226 1.02321 1.21708 1.00206 0.96566 1.01985 1.48349 1.50157 1.28867 1.05892 1.22208 0.96386 0.86157 0.95721 1.22321 0.98990 0.93301 0.98446 0.82386 1.20696 0.84359 0.82216 0.81630 1.90639 1.58099 1.64745 1.32172 1.48608 1.37175 1.40352 1.07787 1.22313 0.98671 0.99747 0.80997 1.22999 0.99641 0.96925 0.97592 1.19706 0.86150 0.85465 0.89065 1.86074 1.59556 1.54390 1.40256 1.21709 0.94711 1.35468 1.08196 0.92975 1.25561 0.99032 0.95353 0.96396 1.69599 1.24373 1.41487 1.19212 0.85568 0.79723 0.78148 0.78228 1.19888 1.20410 1.20310 1.22053 0.90055 0.89283 0.98180 1.22531 1.04918 0.93628 0.97377 1.21175 0.79127 0.84518 0.85396 1.90660 1.39961 1.30105 1.84551 0.91343 0.93180 0.92426 0.93130 0.89625 0.87431 0.89232 0.93586 0.93911 0.91977 0.93753 0.89774 0.86260 0.89435 0.89726 0.90810 0.92208 0.76718 0.91764 0.93515 0.91967 0.83108 0.88625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 9.80 71.98 0.71 -1.20 16 2 C -0.14 -2.35 5.36 30.59 0.16 -2.19 16 3 C 0.16 3.07 2.26 45.00 0.10 3.17 16 4 C -0.13 -3.13 5.36 30.60 0.16 -2.97 16 5 C -0.15 -3.92 9.80 71.98 0.71 -3.21 16 6 N -0.60 -12.87 1.74 -793.91 -1.38 -14.25 16 7 C 0.12 2.07 6.66 86.83 0.58 2.65 16 8 C -0.11 -2.20 2.97 -10.48 -0.03 -2.23 16 9 H 0.16 2.10 8.14 -2.39 -0.02 2.08 16 10 C 0.52 16.81 7.18 87.66 0.63 17.44 16 11 O -0.58 -22.41 14.23 -3.02 -0.04 -22.45 16 12 N -0.61 -21.62 3.29 -811.81 -2.67 -24.29 16 13 C 0.10 3.20 6.05 86.73 0.52 3.73 16 14 C -0.13 -5.32 5.64 31.78 0.18 -5.15 16 15 C 0.24 11.12 0.89 -10.16 -0.01 11.11 16 16 O -0.59 -29.55 13.18 -148.98 -1.96 -31.51 16 17 C -0.56 -29.16 8.25 25.60 0.21 -28.95 16 18 H 0.05 2.75 7.77 -2.91 -0.02 2.73 16 19 C 0.04 1.90 5.30 84.66 0.45 2.35 16 20 N -0.91 -45.35 10.78 21.45 0.23 -45.12 16 21 Si 0.96 40.82 29.54 68.60 2.03 42.85 16 22 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 23 H -0.28 -11.58 7.11 99.48 0.71 -10.87 16 24 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 25 C 0.13 5.61 6.08 86.85 0.53 6.13 16 26 C -0.14 -2.90 5.89 30.62 0.18 -2.72 16 27 C 0.51 13.38 7.38 87.93 0.65 14.03 16 28 O -0.57 -19.44 15.02 -3.04 -0.05 -19.49 16 29 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.05 0.71 7.75 -2.39 -0.02 0.69 16 31 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.05 1.20 6.62 -2.39 -0.02 1.19 16 33 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.11 1.66 8.07 -2.39 -0.02 1.64 16 35 H 0.09 1.65 8.14 -2.38 -0.02 1.63 16 36 H 0.05 1.36 6.65 -2.39 -0.02 1.35 16 37 H 0.04 1.41 6.15 -2.39 -0.01 1.40 16 38 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.08 1.79 6.98 -2.39 -0.02 1.77 16 41 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 42 H 0.09 2.19 5.96 -2.39 -0.01 2.17 16 43 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 44 H 0.07 3.09 7.85 -2.39 -0.02 3.07 16 45 H 0.06 2.46 8.03 -2.39 -0.02 2.44 16 46 H 0.38 19.30 6.93 -74.06 -0.51 18.78 16 47 H 0.27 12.98 8.31 -92.70 -0.77 12.21 16 48 H 0.05 2.24 8.04 -2.39 -0.02 2.22 16 49 H 0.06 2.77 8.01 -2.39 -0.02 2.75 16 50 H 0.15 1.89 8.14 -2.38 -0.02 1.87 16 51 H 0.10 2.24 5.60 -2.39 -0.01 2.23 16 Total: -1.00 -66.65 394.08 2.30 -64.35 By element: Atomic # 1 Polarization: 37.48 SS G_CDS: 0.42 Total: 37.90 kcal Atomic # 6 Polarization: 6.28 SS G_CDS: 5.73 Total: 12.00 kcal Atomic # 7 Polarization: -79.84 SS G_CDS: -3.82 Total: -83.65 kcal Atomic # 8 Polarization: -71.39 SS G_CDS: -2.05 Total: -73.45 kcal Atomic # 14 Polarization: 40.82 SS G_CDS: 2.03 Total: 42.85 kcal Total: -66.65 2.30 -64.35 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592843481.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.790 kcal (2) G-P(sol) polarization free energy of solvation -66.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds