Wall clock time and date at job start Tue Mar 31 2020 22:04:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47609 * 2 1 4 4 C 1.53002 * 109.47170 * 240.00278 * 2 1 3 5 5 C 1.50698 * 109.47315 * 120.00197 * 2 1 3 6 6 O 1.20825 * 119.99965 * 5.08311 * 5 2 1 7 7 O 1.34229 * 120.00408 * 185.08329 * 5 2 1 8 8 C 1.45204 * 117.00188 * 185.34621 * 7 5 2 9 9 N 1.46496 * 109.46926 * 78.42022 * 8 7 5 10 10 C 1.46845 * 124.36881 * 74.32440 * 9 8 7 11 11 C 1.54644 * 105.50197 * 196.91762 * 10 9 8 12 12 C 1.53896 * 101.58894 * 335.22166 * 11 10 9 13 13 C 1.53601 * 110.33687 * 143.78447 * 12 11 10 14 14 C 1.55311 * 102.79630 * 99.55437 * 13 12 11 15 15 C 1.54972 * 101.74065 * 35.03338 * 14 13 12 16 16 N 1.46657 * 110.87689 * 263.47253 * 12 11 10 17 17 C 1.46903 * 110.99745 * 115.73007 * 16 12 11 18 18 C 1.50695 * 109.47085 * 187.38818 * 17 16 12 19 19 H 1.08002 * 119.99731 * 5.04763 * 18 17 16 20 20 C 1.37877 * 120.00158 * 185.04530 * 18 17 16 21 21 N 1.31518 * 119.99752 * 184.97519 * 20 18 17 22 22 Si 1.86797 * 120.00191 * 4.97452 * 20 18 17 23 23 H 1.48502 * 109.47258 * 84.98071 * 22 20 18 24 24 H 1.48493 * 109.47303 * 204.98507 * 22 20 18 25 25 H 1.48504 * 109.46947 * 324.98495 * 22 20 18 26 26 C 1.34662 * 124.36444 * 254.36624 * 9 8 7 27 27 O 1.21279 * 125.07716 * 359.14014 * 26 9 8 28 28 H 1.09004 * 109.46610 * 299.99936 * 1 2 3 29 29 H 1.08996 * 109.46753 * 59.99461 * 1 2 3 30 30 H 1.08998 * 109.47294 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47583 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.46788 * 300.00600 * 3 2 1 33 33 H 1.09003 * 109.46474 * 59.99635 * 3 2 1 34 34 H 1.09008 * 109.46733 * 304.71855 * 4 2 1 35 35 H 1.08992 * 109.47061 * 64.71609 * 4 2 1 36 36 H 1.09001 * 109.46979 * 184.72486 * 4 2 1 37 37 H 1.09000 * 109.46909 * 318.41760 * 8 7 5 38 38 H 1.09002 * 109.46931 * 198.42194 * 8 7 5 39 39 H 1.08993 * 110.24560 * 77.90761 * 10 9 8 40 40 H 1.08997 * 110.23969 * 315.91898 * 10 9 8 41 41 H 1.09005 * 111.00215 * 217.15078 * 11 10 9 42 42 H 1.08997 * 111.00584 * 93.30285 * 11 10 9 43 43 H 1.08997 * 110.74462 * 217.87839 * 13 12 11 44 44 H 1.08997 * 110.74658 * 341.22894 * 13 12 11 45 45 H 1.09001 * 110.97076 * 276.92155 * 14 13 12 46 46 H 1.09005 * 111.00719 * 153.16200 * 14 13 12 47 47 H 1.09011 * 110.36749 * 204.50533 * 15 14 13 48 48 H 1.09001 * 110.37133 * 82.18144 * 15 14 13 49 49 H 1.09000 * 109.46978 * 307.38722 * 17 16 12 50 50 H 1.08996 * 109.47330 * 67.38525 * 17 16 12 51 51 H 0.97004 * 119.99218 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0324 -0.7104 1.2304 6 8 1.2511 -1.2493 1.9782 7 8 3.3477 -0.7447 1.4957 8 6 3.7708 -1.5459 2.6303 9 7 3.7847 -2.9608 2.2508 10 6 4.8035 -3.5790 1.3928 11 6 4.1909 -4.9192 0.9237 12 6 3.1808 -5.2079 2.0483 13 6 1.9174 -5.8669 1.4748 14 6 2.1460 -7.3725 1.7799 15 6 2.8834 -7.3100 3.1415 16 7 3.7549 -6.1168 3.0458 17 6 3.8840 -5.4532 4.3501 18 6 4.6392 -6.3496 5.2972 19 1 5.0590 -7.2791 4.9419 20 6 4.7944 -5.9830 6.6173 21 7 5.5353 -6.7151 7.4202 22 14 3.9522 -4.4467 7.2653 23 1 2.5616 -4.7771 7.6682 24 1 4.6989 -3.9313 8.4407 25 1 3.9265 -3.4105 6.2019 26 6 2.8642 -3.8621 2.6432 27 8 1.9209 -3.6247 3.3675 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 3.1301 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6092 -1.7216 -1.2926 35 1 1.7473 -0.1609 -2.1372 36 1 3.1267 -0.7951 -1.2079 37 1 3.0771 -1.3985 3.4580 38 1 4.7718 -1.2420 2.9366 39 1 5.7158 -3.7599 1.9610 40 1 5.0128 -2.9396 0.5353 41 1 4.9507 -5.6990 0.8714 42 1 3.6856 -4.8035 -0.0351 43 1 1.0259 -5.5009 1.9841 44 1 1.8469 -5.6970 0.4005 45 1 2.7733 -7.8342 1.0173 46 1 1.1971 -7.9007 1.8739 47 1 3.4840 -8.2076 3.2893 48 1 2.1679 -7.1930 3.9554 49 1 4.4252 -4.5149 4.2283 50 1 2.8922 -5.2507 4.7544 51 1 5.6441 -6.4574 8.3490 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274031656.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:31 Heat of formation + Delta-G solvation = -133.025698 kcal Electronic energy + Delta-G solvation = -32439.911832 eV Core-core repulsion = 28338.492625 eV Total energy + Delta-G solvation = -4101.419207 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.54470 -41.65019 -38.90936 -38.05233 -37.06464 -36.83920 -35.26168 -33.21964 -32.43275 -29.06917 -28.87733 -28.41295 -28.27642 -27.72669 -25.06304 -24.57239 -23.61311 -22.23098 -22.12200 -20.63779 -19.97293 -19.08596 -18.55232 -18.20848 -17.78904 -17.38807 -16.88235 -16.60713 -16.29083 -16.09774 -15.75344 -15.10267 -15.00813 -14.90920 -14.87626 -14.70846 -14.61606 -14.54779 -13.92670 -13.57471 -13.46347 -13.35396 -13.25571 -13.12913 -13.07943 -13.02376 -12.86048 -12.68829 -12.67451 -12.37520 -12.31422 -12.02586 -11.98758 -11.95325 -11.93147 -11.88128 -11.56864 -11.50751 -11.32050 -11.00791 -10.90730 -10.11914 -9.24953 -8.42217 -6.42402 1.03533 1.13935 1.18485 1.24360 1.30003 1.71940 1.90768 2.18182 2.90825 3.02579 3.22622 3.42106 3.48998 3.68316 3.74271 3.80419 3.85728 3.88846 4.04541 4.13410 4.19714 4.24024 4.36776 4.55336 4.60179 4.63204 4.64342 4.66301 4.74971 4.78692 4.80525 4.84701 4.87077 4.87784 4.93424 4.99790 5.02990 5.08021 5.11974 5.19711 5.23198 5.27561 5.28509 5.31572 5.36896 5.49284 5.83561 5.89701 6.06654 6.43702 6.63335 6.65154 6.99545 7.20975 8.73921 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.013891 B = 0.004185 C = 0.003650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2015.245342 B = 6688.395653 C = 7670.127150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.056 4.056 3 C -0.136 4.136 4 C -0.136 4.136 5 C 0.453 3.547 6 O -0.529 6.529 7 O -0.353 6.353 8 C 0.287 3.713 9 N -0.632 5.632 10 C 0.101 3.899 11 C -0.102 4.102 12 C 0.051 3.949 13 C -0.118 4.118 14 C -0.108 4.108 15 C 0.046 3.954 16 N -0.487 5.487 17 C 0.175 3.825 18 C -0.511 4.511 19 H 0.055 0.945 20 C 0.029 3.971 21 N -0.931 5.931 22 Si 0.926 3.074 23 H -0.282 1.282 24 H -0.266 1.266 25 H -0.275 1.275 26 C 0.511 3.489 27 O -0.556 6.556 28 H 0.047 0.953 29 H 0.103 0.897 30 H 0.044 0.956 31 H 0.075 0.925 32 H 0.099 0.901 33 H 0.050 0.950 34 H 0.050 0.950 35 H 0.101 0.899 36 H 0.073 0.927 37 H 0.061 0.939 38 H 0.163 0.837 39 H 0.075 0.925 40 H 0.116 0.884 41 H 0.112 0.888 42 H 0.112 0.888 43 H 0.043 0.957 44 H 0.112 0.888 45 H 0.105 0.895 46 H 0.088 0.912 47 H 0.078 0.922 48 H 0.014 0.986 49 H 0.017 0.983 50 H -0.030 1.030 51 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.109 14.119 -24.769 28.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.057 4.057 3 C -0.194 4.194 4 C -0.193 4.193 5 C 0.296 3.704 6 O -0.416 6.416 7 O -0.267 6.267 8 C 0.129 3.871 9 N -0.374 5.374 10 C -0.020 4.020 11 C -0.140 4.140 12 C -0.042 4.042 13 C -0.157 4.157 14 C -0.146 4.146 15 C -0.082 4.082 16 N -0.212 5.212 17 C 0.047 3.953 18 C -0.549 4.549 19 H 0.073 0.927 20 C -0.170 4.170 21 N -0.572 5.572 22 Si 0.752 3.248 23 H -0.208 1.208 24 H -0.190 1.190 25 H -0.200 1.200 26 C 0.299 3.701 27 O -0.432 6.432 28 H 0.066 0.934 29 H 0.121 0.879 30 H 0.063 0.937 31 H 0.094 0.906 32 H 0.117 0.883 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.120 0.880 36 H 0.092 0.908 37 H 0.079 0.921 38 H 0.180 0.820 39 H 0.094 0.906 40 H 0.134 0.866 41 H 0.130 0.870 42 H 0.130 0.870 43 H 0.062 0.938 44 H 0.130 0.870 45 H 0.124 0.876 46 H 0.107 0.893 47 H 0.097 0.903 48 H 0.033 0.967 49 H 0.035 0.965 50 H -0.013 1.013 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.248 14.057 -24.063 28.190 hybrid contribution -1.307 0.612 2.287 2.704 sum -5.555 14.670 -21.777 26.838 Atomic orbital electron populations 1.21791 0.91553 1.02258 1.03333 1.20787 0.97274 0.97655 0.90013 1.21885 1.02536 0.91168 1.03769 1.21876 1.02269 1.00063 0.95059 1.24820 0.80702 0.77360 0.87539 1.90822 1.57425 1.43834 1.49471 1.86700 1.26471 1.63621 1.49871 1.23039 1.02367 0.75829 0.85837 1.49009 1.28109 1.08400 1.51920 1.22440 0.90247 0.94824 0.94521 1.22702 0.98415 0.96963 0.95905 1.22398 0.97183 0.89209 0.95418 1.22702 0.94442 0.96199 1.02352 1.22749 1.01095 0.94966 0.95814 1.23062 0.93994 0.93760 0.97371 1.63829 1.45301 1.05152 1.06900 1.20032 0.93291 0.94225 0.87736 1.21136 1.33520 1.06737 0.93505 0.92716 1.25478 0.95355 0.98975 0.97213 1.69981 1.39911 1.40802 1.06473 0.86075 0.78897 0.81219 0.78598 1.20796 1.19013 1.19970 1.21592 0.80558 0.88667 0.79299 1.90695 1.31718 1.83193 1.37558 0.93428 0.87884 0.93686 0.90631 0.88266 0.93074 0.93104 0.87991 0.90769 0.92105 0.81969 0.90629 0.86589 0.86981 0.87010 0.93793 0.86958 0.87619 0.89297 0.90332 0.96736 0.96468 1.01278 0.92115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.34 7.78 71.98 0.56 -1.78 16 2 C -0.06 -0.98 0.97 -52.93 -0.05 -1.03 16 3 C -0.14 -1.65 8.36 71.98 0.60 -1.05 16 4 C -0.14 -1.67 8.45 71.98 0.61 -1.06 16 5 C 0.45 12.49 6.51 71.24 0.46 12.96 16 6 O -0.53 -20.22 14.14 25.83 0.37 -19.86 16 7 O -0.35 -8.90 10.17 -51.41 -0.52 -9.42 16 8 C 0.29 8.54 6.83 127.77 0.87 9.41 16 9 N -0.63 -20.66 3.04 -931.10 -2.83 -23.49 16 10 C 0.10 2.37 7.36 86.87 0.64 3.01 16 11 C -0.10 -2.39 6.42 31.46 0.20 -2.19 16 12 C 0.05 1.78 0.99 3.27 0.00 1.78 16 13 C -0.12 -3.54 6.05 31.59 0.19 -3.35 16 14 C -0.11 -2.98 7.08 32.06 0.23 -2.76 16 15 C 0.05 1.81 6.10 86.75 0.53 2.34 16 16 N -0.49 -20.77 4.81 -846.31 -4.07 -24.84 16 17 C 0.17 9.26 2.57 85.55 0.22 9.47 16 18 C -0.51 -30.77 9.27 25.60 0.24 -30.53 16 19 H 0.05 3.53 8.03 -2.91 -0.02 3.51 16 20 C 0.03 1.77 5.47 84.65 0.46 2.24 16 21 N -0.93 -59.13 13.96 21.45 0.30 -58.83 16 22 Si 0.93 49.43 27.30 68.60 1.87 51.31 16 23 H -0.28 -15.26 7.11 99.48 0.71 -14.55 16 24 H -0.27 -13.18 7.11 99.48 0.71 -12.47 16 25 H -0.27 -14.73 6.87 99.48 0.68 -14.05 16 26 C 0.51 21.01 4.23 87.62 0.37 21.38 16 27 O -0.56 -28.56 14.85 5.54 0.08 -28.48 16 28 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.04 0.98 8.04 -2.39 -0.02 0.96 16 31 H 0.07 0.86 8.03 -2.39 -0.02 0.85 16 32 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.05 0.74 8.14 -2.38 -0.02 0.72 16 35 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.07 0.86 8.12 -2.39 -0.02 0.84 16 37 H 0.06 2.28 6.99 -2.39 -0.02 2.27 16 38 H 0.16 3.57 8.14 -2.39 -0.02 3.55 16 39 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 40 H 0.12 1.82 8.14 -2.39 -0.02 1.81 16 41 H 0.11 2.50 8.07 -2.38 -0.02 2.48 16 42 H 0.11 1.84 7.45 -2.39 -0.02 1.82 16 43 H 0.04 1.59 7.51 -2.39 -0.02 1.58 16 44 H 0.11 2.44 7.39 -2.39 -0.02 2.43 16 45 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16 46 H 0.09 2.15 8.14 -2.38 -0.02 2.13 16 47 H 0.08 3.12 8.14 -2.38 -0.02 3.10 16 48 H 0.01 0.65 7.66 -2.39 -0.02 0.63 16 49 H 0.02 0.94 6.62 -2.39 -0.02 0.92 16 50 H -0.03 -1.80 5.81 -2.39 -0.01 -1.82 16 51 H 0.27 15.97 8.31 -92.71 -0.77 15.20 16 Total: -1.00 -86.92 399.51 2.21 -84.71 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: 0.88 Total: 10.06 kcal Atomic # 6 Polarization: 12.70 SS G_CDS: 6.14 Total: 18.84 kcal Atomic # 7 Polarization: -100.56 SS G_CDS: -6.60 Total: -107.16 kcal Atomic # 8 Polarization: -57.68 SS G_CDS: -0.08 Total: -57.76 kcal Atomic # 14 Polarization: 49.43 SS G_CDS: 1.87 Total: 51.31 kcal Total: -86.92 2.21 -84.71 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274031656.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.318 kcal (2) G-P(sol) polarization free energy of solvation -86.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds