Wall clock time and date at job start Tue Mar 31 2020 22:25:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.46990 * 2 1 4 4 C 1.50701 * 109.47105 * 120.00270 * 2 1 3 5 5 H 1.07999 * 120.00172 * 122.51003 * 4 2 1 6 6 C 1.37875 * 119.99730 * 302.50603 * 4 2 1 7 7 N 1.31512 * 119.99822 * 165.26433 * 6 4 2 8 8 Si 1.86798 * 120.00383 * 345.25890 * 6 4 2 9 9 H 1.48504 * 109.47226 * 268.40399 * 8 6 4 10 10 H 1.48506 * 109.46806 * 28.40394 * 8 6 4 11 11 H 1.48499 * 109.47538 * 148.40359 * 8 6 4 12 12 C 1.52999 * 109.46737 * 240.00147 * 2 1 3 13 13 N 1.46494 * 109.47384 * 59.99951 * 12 2 1 14 14 C 1.34780 * 120.00083 * 179.97438 * 13 12 2 15 15 O 1.21347 * 119.99866 * 359.97438 * 14 13 12 16 16 C 1.49456 * 119.99767 * 179.97438 * 14 13 12 17 17 O 1.21349 * 120.00297 * 0.02562 * 16 14 13 18 18 N 1.34780 * 119.99767 * 180.02562 * 16 14 13 19 19 C 1.46494 * 120.00083 * 180.02562 * 18 16 14 20 20 C 1.52997 * 109.47387 * 179.97438 * 19 18 16 21 21 H 1.08998 * 109.84566 * 59.29836 * 20 19 18 22 22 C 1.54170 * 109.85707 * 180.25121 * 20 19 18 23 23 C 1.55001 * 104.26897 * 121.24416 * 22 20 19 24 24 C 1.53905 * 101.91984 * 19.78493 * 23 22 20 25 25 C 1.52640 * 115.55618 * 195.00695 * 24 23 22 26 26 C 1.53979 * 86.73856 * 217.58495 * 25 24 23 27 27 C 1.52648 * 115.53805 * 93.99133 * 24 23 22 28 28 O 1.43262 * 105.19010 * 324.57928 * 24 23 22 29 29 H 1.08998 * 109.47124 * 290.68281 * 1 2 3 30 30 H 1.08999 * 109.47270 * 50.68349 * 1 2 3 31 31 H 1.09005 * 109.47242 * 170.68336 * 1 2 3 32 32 H 1.08998 * 109.47009 * 180.02562 * 3 2 1 33 33 H 1.09004 * 109.47341 * 300.00309 * 3 2 1 34 34 H 1.09001 * 109.47288 * 60.00010 * 3 2 1 35 35 H 0.97005 * 120.00118 * 179.97438 * 7 6 4 36 36 H 1.09005 * 109.46519 * 179.97438 * 12 2 1 37 37 H 1.09001 * 109.47123 * 299.99706 * 12 2 1 38 38 H 0.97006 * 119.99902 * 359.97438 * 13 12 2 39 39 H 0.97005 * 119.99928 * 359.97438 * 18 16 14 40 40 H 1.08998 * 109.47175 * 300.00098 * 19 18 16 41 41 H 1.09001 * 109.47190 * 60.00138 * 19 18 16 42 42 H 1.09001 * 110.46829 * 239.93756 * 22 20 19 43 43 H 1.08994 * 110.47252 * 2.41424 * 22 20 19 44 44 H 1.08993 * 110.94512 * 137.94229 * 23 22 20 45 45 H 1.09000 * 110.93820 * 261.63644 * 23 22 20 46 46 H 1.09009 * 113.66789 * 332.04784 * 25 24 23 47 47 H 1.08999 * 113.66756 * 103.11885 * 25 24 23 48 48 H 1.08995 * 113.58181 * 269.98609 * 26 25 24 49 49 H 1.09000 * 113.65225 * 139.19889 * 26 25 24 50 50 H 1.08996 * 113.67249 * 256.89205 * 27 24 23 51 51 H 1.09003 * 113.66962 * 27.87789 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6863 -1.5643 1.1319 6 6 1.6572 -0.2703 2.4820 7 7 1.8449 -1.0386 3.5328 8 14 0.8824 1.4172 2.6853 9 1 1.9433 2.4191 2.9609 10 1 0.1651 1.7859 1.4383 11 1 -0.0773 1.3881 3.8182 12 6 2.0399 -0.7212 -1.2493 13 7 1.5516 -0.0307 -2.4454 14 6 1.8776 -0.4908 -3.6695 15 8 2.5760 -1.4769 -3.7809 16 6 1.3789 0.2134 -4.8898 17 8 0.6808 1.1998 -4.7784 18 7 1.7044 -0.2471 -6.1139 19 6 1.2161 0.4435 -7.3100 20 6 1.7265 -0.2773 -8.5593 21 1 1.3771 -1.3098 -8.5595 22 6 1.2226 0.4462 -9.8240 23 6 2.5171 0.8412 -10.5795 24 6 3.5511 -0.1162 -9.9606 25 6 5.0133 0.2370 -10.2196 26 6 5.2655 -1.2769 -10.3438 27 6 3.7795 -1.4194 -10.7219 28 8 3.1657 -0.2480 -8.5871 29 1 -0.3633 0.3630 0.9614 30 1 -0.3634 0.6511 -0.7950 31 1 -0.3634 -1.0141 -0.1664 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.5813 -0.7288 4.4134 36 1 3.1300 -0.7208 -1.2495 37 1 1.6766 -1.7489 -1.2493 38 1 0.9936 0.7579 -2.3564 39 1 2.2627 -1.0353 -6.2029 40 1 0.1261 0.4436 -7.3100 41 1 1.5794 1.4712 -7.3101 42 1 0.6166 -0.2258 -10.4317 43 1 0.6509 1.3338 -9.5532 44 1 2.4133 0.6634 -11.6498 45 1 2.7815 1.8801 -10.3824 46 1 5.1733 0.7850 -11.1482 47 1 5.5109 0.6949 -9.3646 48 1 5.5227 -1.7552 -9.3988 49 1 5.9482 -1.5417 -11.1513 50 1 3.2932 -2.2826 -10.2676 51 1 3.5892 -1.3401 -11.7922 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001334597666.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:47 Heat of formation + Delta-G solvation = -105.069243 kcal Electronic energy + Delta-G solvation = -29690.072500 eV Core-core repulsion = 25589.865575 eV Total energy + Delta-G solvation = -4100.206924 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.85171 -41.42993 -39.81952 -38.44820 -37.71114 -35.80028 -34.90464 -33.43999 -33.22358 -30.54008 -28.33279 -28.00169 -27.11910 -26.82095 -26.17794 -24.35218 -23.06783 -22.35544 -21.36034 -21.03141 -20.19274 -19.63382 -18.16557 -17.93964 -17.49271 -17.24336 -16.93727 -16.73118 -16.72563 -16.34281 -16.00545 -15.61309 -15.52861 -14.91855 -14.86965 -14.64838 -14.53937 -14.39534 -14.03227 -13.77569 -13.74287 -13.65072 -13.36353 -13.14336 -12.99211 -12.86421 -12.64731 -12.47326 -12.40480 -12.18425 -12.02796 -11.94369 -11.77638 -11.69589 -11.38160 -11.12028 -11.05166 -10.73342 -10.61062 -10.47809 -10.36930 -10.34485 -10.19438 -8.30424 -6.31225 0.32730 1.31599 1.36968 1.39766 1.49309 2.12655 2.35129 2.52457 2.76193 3.05760 3.41687 3.46918 3.61839 3.62470 3.87970 3.93996 3.97113 4.02613 4.09744 4.22860 4.29225 4.38803 4.38949 4.52918 4.60752 4.73519 4.78880 4.79604 4.81711 4.83167 4.84925 4.90570 4.96695 5.01476 5.05102 5.05260 5.06718 5.07815 5.15875 5.18325 5.29144 5.32117 5.42161 5.47278 5.67996 5.75087 5.90674 6.06061 6.27654 6.35941 6.68845 6.74536 6.93799 7.33353 8.86155 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.026381 B = 0.001996 C = 0.001932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.112916 B =14023.704330 C =14488.984036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.026 3.974 3 C -0.149 4.149 4 C -0.514 4.514 5 H 0.034 0.966 6 C 0.019 3.981 7 N -0.942 5.942 8 Si 0.930 3.070 9 H -0.285 1.285 10 H -0.198 1.198 11 H -0.310 1.310 12 C 0.152 3.848 13 N -0.682 5.682 14 C 0.499 3.501 15 O -0.551 6.551 16 C 0.514 3.486 17 O -0.540 6.540 18 N -0.686 5.686 19 C 0.118 3.882 20 C 0.065 3.935 21 H 0.085 0.915 22 C -0.142 4.142 23 C -0.135 4.135 24 C 0.069 3.931 25 C -0.130 4.130 26 C -0.142 4.142 27 C -0.148 4.148 28 O -0.370 6.370 29 H 0.047 0.953 30 H 0.060 0.940 31 H 0.045 0.955 32 H 0.050 0.950 33 H 0.064 0.936 34 H 0.040 0.960 35 H 0.264 0.736 36 H 0.057 0.943 37 H 0.056 0.944 38 H 0.416 0.584 39 H 0.418 0.582 40 H 0.099 0.901 41 H 0.073 0.927 42 H 0.099 0.901 43 H 0.091 0.909 44 H 0.103 0.897 45 H 0.077 0.923 46 H 0.114 0.886 47 H 0.060 0.940 48 H 0.065 0.935 49 H 0.081 0.919 50 H 0.066 0.934 51 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.272 5.284 -35.382 35.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.025 3.975 3 C -0.206 4.206 4 C -0.552 4.552 5 H 0.052 0.948 6 C -0.179 4.179 7 N -0.581 5.581 8 Si 0.758 3.242 9 H -0.213 1.213 10 H -0.121 1.121 11 H -0.239 1.239 12 C 0.029 3.971 13 N -0.334 5.334 14 C 0.279 3.721 15 O -0.430 6.430 16 C 0.294 3.706 17 O -0.418 6.418 18 N -0.338 5.338 19 C -0.004 4.004 20 C 0.008 3.992 21 H 0.103 0.897 22 C -0.180 4.180 23 C -0.173 4.173 24 C 0.030 3.970 25 C -0.167 4.167 26 C -0.179 4.179 27 C -0.185 4.185 28 O -0.290 6.290 29 H 0.066 0.934 30 H 0.079 0.921 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.083 0.917 34 H 0.058 0.942 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.254 0.746 39 H 0.255 0.745 40 H 0.117 0.883 41 H 0.092 0.908 42 H 0.117 0.883 43 H 0.109 0.891 44 H 0.121 0.879 45 H 0.096 0.904 46 H 0.132 0.868 47 H 0.079 0.921 48 H 0.084 0.916 49 H 0.100 0.900 50 H 0.084 0.916 51 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -1.158 5.245 -35.030 35.440 hybrid contribution 0.065 0.168 1.194 1.207 sum -1.093 5.413 -33.837 34.284 Atomic orbital electron populations 1.22277 0.96189 1.00811 1.00807 1.18683 0.93737 0.93196 0.91908 1.22337 1.01144 0.96868 1.00269 1.20943 1.29930 1.14109 0.90225 0.94776 1.25799 0.95766 1.00862 0.95432 1.70110 1.50000 1.37972 1.00062 0.86619 0.78806 0.80366 0.78372 1.21257 1.12101 1.23915 1.21314 0.98183 0.95428 0.82150 1.45964 1.51085 1.31629 1.04737 1.20352 0.81575 0.84803 0.85337 1.90741 1.38321 1.26809 1.87090 1.19933 0.81210 0.84409 0.85003 1.90741 1.37906 1.26102 1.87003 1.45700 1.51654 1.32035 1.04429 1.21947 1.00179 0.96648 0.81655 1.23142 0.81358 1.00067 0.94677 0.89682 1.22929 0.98660 1.01906 0.94508 1.22923 0.93325 0.99643 1.01361 1.22923 0.95989 0.96177 0.81901 1.22949 0.93566 0.97417 1.02779 1.22858 0.97196 0.96131 1.01731 1.23301 0.96598 0.97212 1.01435 1.88762 1.20590 1.94307 1.25358 0.93448 0.92149 0.93566 0.93127 0.91712 0.94204 0.92677 0.92504 0.92516 0.74558 0.74503 0.88302 0.90842 0.88265 0.89080 0.87899 0.90434 0.86751 0.92098 0.91613 0.89984 0.91561 0.87125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.63 7.43 71.98 0.54 -5.10 16 2 C 0.03 1.11 0.50 -52.93 -0.03 1.09 16 3 C -0.15 -5.79 7.59 71.98 0.55 -5.24 16 4 C -0.51 -28.16 8.62 25.60 0.22 -27.94 16 5 H 0.03 2.10 7.99 -2.91 -0.02 2.08 16 6 C 0.02 1.09 5.31 84.65 0.45 1.54 16 7 N -0.94 -58.30 13.96 21.45 0.30 -58.00 16 8 Si 0.93 42.71 22.92 68.60 1.57 44.29 16 9 H -0.29 -13.01 7.11 99.48 0.71 -12.31 16 10 H -0.20 -7.76 4.37 99.48 0.43 -7.33 16 11 H -0.31 -14.62 7.11 99.48 0.71 -13.91 16 12 C 0.15 6.06 4.49 86.38 0.39 6.45 16 13 N -0.68 -22.82 5.00 -464.41 -2.32 -25.14 16 14 C 0.50 16.48 7.89 87.27 0.69 17.16 16 15 O -0.55 -20.76 16.48 -3.24 -0.05 -20.81 16 16 C 0.51 14.58 7.89 87.27 0.69 15.27 16 17 O -0.54 -16.70 16.48 -3.24 -0.05 -16.76 16 18 N -0.69 -15.41 5.47 -464.42 -2.54 -17.95 16 19 C 0.12 1.96 5.15 86.38 0.44 2.40 16 20 C 0.07 0.85 3.51 30.99 0.11 0.96 16 21 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 22 C -0.14 -1.08 6.65 31.68 0.21 -0.87 16 23 C -0.14 -1.07 6.48 31.58 0.20 -0.87 16 24 C 0.07 0.86 1.12 -10.74 -0.01 0.85 16 25 C -0.13 -1.54 7.64 30.81 0.24 -1.31 16 26 C -0.14 -1.71 8.09 31.25 0.25 -1.45 16 27 C -0.15 -1.50 7.63 30.81 0.24 -1.27 16 28 O -0.37 -6.64 10.85 -148.98 -1.62 -8.26 16 29 H 0.05 1.94 3.95 -2.39 -0.01 1.93 16 30 H 0.06 1.95 7.13 -2.39 -0.02 1.93 16 31 H 0.05 1.81 8.12 -2.38 -0.02 1.79 16 32 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.06 2.07 6.86 -2.38 -0.02 2.05 16 34 H 0.04 1.59 2.59 -2.39 -0.01 1.59 16 35 H 0.26 15.43 8.31 -92.70 -0.77 14.66 16 36 H 0.06 2.38 8.14 -2.38 -0.02 2.36 16 37 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 38 H 0.42 12.73 5.73 -92.70 -0.53 12.20 16 39 H 0.42 9.35 7.88 -92.70 -0.73 8.62 16 40 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 43 H 0.09 0.58 7.70 -2.39 -0.02 0.56 16 44 H 0.10 0.41 7.96 -2.39 -0.02 0.39 16 45 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 46 H 0.11 0.84 8.14 -2.38 -0.02 0.83 16 47 H 0.06 0.93 8.14 -2.39 -0.02 0.92 16 48 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 49 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 50 H 0.07 0.78 8.14 -2.39 -0.02 0.77 16 51 H 0.11 0.64 8.01 -2.39 -0.02 0.63 16 Total: -1.00 -70.25 393.78 -0.12 -70.38 By element: Atomic # 1 Polarization: 31.16 SS G_CDS: -0.58 Total: 30.58 kcal Atomic # 6 Polarization: -3.49 SS G_CDS: 5.17 Total: 1.68 kcal Atomic # 7 Polarization: -96.53 SS G_CDS: -4.56 Total: -101.09 kcal Atomic # 8 Polarization: -44.10 SS G_CDS: -1.72 Total: -45.83 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 1.57 Total: 44.29 kcal Total: -70.25 -0.12 -70.38 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334597666.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.693 kcal (2) G-P(sol) polarization free energy of solvation -70.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds