Wall clock time and date at job start Tue Mar 31 2020 20:31:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47564 * 2 1 4 4 C 1.50709 * 109.46990 * 239.99877 * 2 1 3 5 5 H 1.07996 * 119.99906 * 239.99975 * 4 2 1 6 6 C 1.37875 * 119.99740 * 60.00110 * 4 2 1 7 7 N 1.31511 * 120.00047 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99803 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47177 * 59.99720 * 8 6 4 10 10 H 1.48497 * 109.47232 * 179.97438 * 8 6 4 11 11 H 1.48506 * 109.47076 * 299.99846 * 8 6 4 12 12 C 1.53002 * 109.47262 * 120.00355 * 2 1 3 13 13 N 1.46498 * 109.46940 * 299.99731 * 12 2 1 14 14 C 1.34774 * 120.00408 * 180.02562 * 13 12 2 15 15 O 1.21345 * 119.99856 * 0.02562 * 14 13 12 16 16 C 1.49446 * 120.00488 * 179.97438 * 14 13 12 17 17 O 1.21359 * 119.99793 * 359.97438 * 16 14 13 18 18 N 1.34774 * 120.00488 * 180.02562 * 16 14 13 19 19 C 1.46498 * 120.00408 * 180.02562 * 18 16 14 20 20 H 1.09007 * 109.23380 * 357.04927 * 19 18 16 21 21 C 1.52682 * 109.23759 * 237.61971 * 19 18 16 22 22 C 1.53241 * 108.70248 * 301.61596 * 21 19 18 23 23 C 1.52879 * 108.61869 * 296.78294 * 22 21 19 24 24 C 1.51629 * 110.97440 * 59.11789 * 23 22 21 25 25 H 1.09002 * 108.38520 * 186.42085 * 24 23 22 26 26 O 1.42696 * 113.16582 * 66.99504 * 24 23 22 27 27 C 1.43637 * 109.18904 * 209.46736 * 26 24 23 28 28 C 1.54533 * 107.48301 * 2.16450 * 27 26 24 29 29 C 1.53006 * 109.23819 * 116.43531 * 19 18 16 30 30 H 1.09001 * 112.57790 * 192.54821 * 29 19 18 31 31 H 1.09001 * 109.47090 * 299.99942 * 1 2 3 32 32 H 1.08997 * 109.46885 * 60.00039 * 1 2 3 33 33 H 1.08998 * 109.47393 * 180.02562 * 1 2 3 34 34 H 1.08999 * 109.47454 * 180.02562 * 3 2 1 35 35 H 1.09007 * 109.46636 * 300.00367 * 3 2 1 36 36 H 1.09001 * 109.46870 * 59.99923 * 3 2 1 37 37 H 0.97003 * 119.99984 * 179.97438 * 7 6 4 38 38 H 1.08996 * 109.47202 * 180.02562 * 12 2 1 39 39 H 1.08998 * 109.47447 * 59.99384 * 12 2 1 40 40 H 0.97001 * 119.99823 * 359.97438 * 13 12 2 41 41 H 0.97001 * 119.99731 * 359.97438 * 18 16 14 42 42 H 1.08998 * 109.59944 * 181.85267 * 21 19 18 43 43 H 1.09001 * 109.59892 * 61.38056 * 21 19 18 44 44 H 1.09000 * 109.63656 * 56.56800 * 22 21 19 45 45 H 1.08996 * 109.64210 * 176.98645 * 22 21 19 46 46 H 1.08997 * 109.12724 * 179.78520 * 23 22 21 47 47 H 1.09006 * 109.12564 * 298.88863 * 23 22 21 48 48 H 1.08997 * 109.84642 * 121.64746 * 27 26 24 49 49 H 1.09003 * 109.84979 * 242.57041 * 27 26 24 50 50 H 1.09003 * 110.92405 * 263.71067 * 28 27 26 51 51 H 1.08991 * 110.92870 * 140.05455 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4828 7 7 0.9427 0.8296 -2.6034 8 14 2.3212 -1.1204 -4.0080 9 1 1.8257 -2.5203 -4.0077 10 1 1.8258 -0.4207 -5.2205 11 1 3.8063 -1.1210 -4.0082 12 6 2.0400 -0.7213 1.2492 13 7 1.5517 -0.0307 2.4454 14 6 1.8777 -0.4909 3.6695 15 8 2.5761 -1.4769 3.7808 16 6 1.3801 0.2139 4.8897 17 8 0.6828 1.2009 4.7784 18 7 1.7065 -0.2459 6.1139 19 6 1.2182 0.4447 7.3100 20 1 0.6565 1.3293 7.0098 21 6 2.4086 0.8711 8.1659 22 6 3.2199 -0.3753 8.5351 23 6 2.3436 -1.2933 9.3874 24 6 1.0901 -1.6981 8.6363 25 1 0.4454 -2.2534 9.3174 26 8 1.3556 -2.5340 7.5106 27 6 0.3452 -2.3172 6.5129 28 6 -0.6010 -1.2159 7.0420 29 6 0.2982 -0.4936 8.0936 30 1 -0.2660 0.0246 8.8690 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 3.1301 1.4424 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 0.7087 1.1612 -3.4844 38 1 3.1300 -0.7209 1.2494 39 1 1.6766 -1.7490 1.2493 40 1 0.9944 0.7582 2.3564 41 1 2.2642 -1.0346 6.2028 42 1 2.0508 1.3567 9.0738 43 1 3.0356 1.5617 7.6019 44 1 3.5229 -0.8973 7.6274 45 1 4.1037 -0.0826 9.1018 46 1 2.9118 -2.1851 9.6517 47 1 2.0586 -0.7691 10.2997 48 1 0.8086 -1.9911 5.5818 49 1 -0.2132 -3.2382 6.3455 50 1 -1.4801 -1.6527 7.5159 51 1 -0.8898 -0.5337 6.2426 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000422419829.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:09 Heat of formation + Delta-G solvation = -130.405276 kcal Electronic energy + Delta-G solvation = -31493.838843 eV Core-core repulsion = 27392.533266 eV Total energy + Delta-G solvation = -4101.305577 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.63353 -41.12673 -39.52003 -38.21854 -37.14633 -35.42707 -34.77614 -33.00301 -32.75641 -30.61268 -29.57691 -27.91462 -27.60476 -27.21691 -25.16166 -23.86723 -23.18995 -22.52750 -21.65988 -20.73665 -20.13092 -19.75029 -18.09938 -17.94086 -17.68188 -17.04065 -16.94008 -16.62064 -16.45794 -15.96963 -15.85027 -15.60337 -15.30781 -15.01836 -14.82462 -14.71346 -14.34005 -14.07248 -13.99076 -13.37794 -13.23099 -13.21453 -13.13803 -12.92499 -12.79670 -12.69907 -12.67343 -12.62635 -12.59742 -12.35157 -12.28773 -12.13015 -11.67920 -11.57676 -11.52436 -11.32355 -11.06193 -10.78463 -10.64524 -10.41996 -10.38260 -10.17779 -10.01787 -8.02514 -6.19233 0.31797 1.35445 1.45352 1.46707 1.53310 2.11391 2.44720 2.68884 2.84503 3.21299 3.34047 3.48311 3.51224 3.82047 3.97845 4.00299 4.07002 4.21338 4.26170 4.32606 4.44729 4.45385 4.50146 4.65665 4.65883 4.71538 4.78220 4.81097 4.90163 4.93735 4.94186 5.01978 5.02754 5.04390 5.14448 5.15211 5.19700 5.23727 5.25379 5.33937 5.43570 5.46647 5.63200 5.66180 5.94439 6.06702 6.09756 6.17309 6.36970 6.40189 6.72529 6.84851 6.94911 7.48804 8.96629 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.025297 B = 0.002528 C = 0.002498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.584489 B =11073.453915 C =11206.592260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.052 3.948 3 C -0.124 4.124 4 C -0.529 4.529 5 H 0.051 0.949 6 C 0.028 3.972 7 N -0.901 5.901 8 Si 0.948 3.052 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.276 1.276 12 C 0.143 3.857 13 N -0.680 5.680 14 C 0.491 3.509 15 O -0.550 6.550 16 C 0.512 3.488 17 O -0.539 6.539 18 N -0.681 5.681 19 C 0.134 3.866 20 H 0.099 0.901 21 C -0.123 4.123 22 C -0.123 4.123 23 C -0.111 4.111 24 C 0.076 3.924 25 H 0.072 0.928 26 O -0.392 6.392 27 C 0.041 3.959 28 C -0.149 4.149 29 C -0.116 4.116 30 H 0.146 0.854 31 H 0.029 0.971 32 H 0.064 0.936 33 H 0.023 0.977 34 H 0.022 0.978 35 H 0.064 0.936 36 H 0.029 0.971 37 H 0.261 0.739 38 H 0.053 0.947 39 H 0.053 0.947 40 H 0.413 0.587 41 H 0.418 0.582 42 H 0.109 0.891 43 H 0.062 0.938 44 H 0.042 0.958 45 H 0.084 0.916 46 H 0.069 0.931 47 H 0.107 0.893 48 H 0.053 0.947 49 H 0.066 0.934 50 H 0.096 0.904 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.571 -0.272 27.081 27.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.052 3.948 3 C -0.182 4.182 4 C -0.568 4.568 5 H 0.069 0.931 6 C -0.172 4.172 7 N -0.539 5.539 8 Si 0.774 3.226 9 H -0.201 1.201 10 H -0.210 1.210 11 H -0.201 1.201 12 C 0.020 3.980 13 N -0.332 5.332 14 C 0.272 3.728 15 O -0.429 6.429 16 C 0.292 3.708 17 O -0.417 6.417 18 N -0.337 5.337 19 C 0.031 3.969 20 H 0.117 0.883 21 C -0.161 4.161 22 C -0.161 4.161 23 C -0.149 4.149 24 C 0.019 3.981 25 H 0.090 0.910 26 O -0.312 6.312 27 C -0.036 4.036 28 C -0.186 4.186 29 C -0.135 4.135 30 H 0.163 0.837 31 H 0.048 0.952 32 H 0.083 0.917 33 H 0.042 0.958 34 H 0.042 0.958 35 H 0.083 0.917 36 H 0.048 0.952 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.251 0.749 41 H 0.259 0.741 42 H 0.128 0.872 43 H 0.081 0.919 44 H 0.061 0.939 45 H 0.102 0.898 46 H 0.088 0.912 47 H 0.126 0.874 48 H 0.071 0.929 49 H 0.084 0.916 50 H 0.114 0.886 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.479 -0.312 26.908 26.951 hybrid contribution 0.172 -0.510 -1.620 1.707 sum -1.307 -0.822 25.289 25.336 Atomic orbital electron populations 1.21702 0.97294 0.98880 1.00238 1.18360 0.93166 0.92957 0.90366 1.21709 0.98188 0.98028 1.00237 1.21225 1.31952 1.12360 0.91237 0.93116 1.25485 0.95066 0.95556 1.01110 1.69913 1.36892 1.23361 1.23743 0.85775 0.78652 0.78784 0.79346 1.20116 1.20998 1.20117 1.21553 0.97855 0.95492 0.83103 1.46059 1.50757 1.31410 1.04951 1.20475 0.81844 0.85009 0.85492 1.90733 1.38369 1.26749 1.87081 1.19965 0.81178 0.84380 0.85264 1.90734 1.38024 1.26078 1.86876 1.46374 1.51234 1.31888 1.04243 1.21303 0.96262 0.95710 0.83654 0.88290 1.21902 0.95687 0.97972 1.00545 1.21552 0.98961 0.95772 0.99817 1.21352 0.94673 1.00168 0.98662 1.22475 0.97342 0.89977 0.88279 0.91022 1.88351 1.50589 1.63601 1.28652 1.23423 0.89569 0.98693 0.91916 1.23303 0.98855 0.97225 0.99263 1.23353 0.95934 0.96293 0.97903 0.83650 0.95165 0.91702 0.95808 0.95835 0.91694 0.95172 0.92991 0.92890 0.92825 0.74897 0.74067 0.87249 0.91918 0.93882 0.89778 0.91191 0.87436 0.92893 0.91609 0.88579 0.91377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.65 8.08 71.98 0.58 -5.07 16 2 C 0.05 2.44 0.50 -52.93 -0.03 2.42 16 3 C -0.12 -5.69 8.08 71.98 0.58 -5.11 16 4 C -0.53 -27.83 8.01 25.60 0.21 -27.63 16 5 H 0.05 2.67 7.74 -2.91 -0.02 2.65 16 6 C 0.03 1.46 5.15 84.65 0.44 1.90 16 7 N -0.90 -48.47 9.35 21.45 0.20 -48.27 16 8 Si 0.95 42.48 29.54 68.60 2.03 44.51 16 9 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 10 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 11 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 12 C 0.14 6.06 4.50 86.38 0.39 6.45 16 13 N -0.68 -25.29 4.95 -464.43 -2.30 -27.59 16 14 C 0.49 17.45 7.49 87.27 0.65 18.10 16 15 O -0.55 -21.70 16.07 -3.23 -0.05 -21.75 16 16 C 0.51 15.39 6.36 87.27 0.55 15.94 16 17 O -0.54 -17.60 15.80 -3.27 -0.05 -17.65 16 18 N -0.68 -16.14 2.26 -444.35 -1.00 -17.14 16 19 C 0.13 2.26 2.57 44.89 0.12 2.38 16 20 H 0.10 1.89 6.89 -2.38 -0.02 1.87 16 21 C -0.12 -1.53 5.65 30.57 0.17 -1.36 16 22 C -0.12 -1.60 5.74 30.63 0.18 -1.42 16 23 C -0.11 -1.18 5.68 30.10 0.17 -1.01 16 24 C 0.08 1.07 3.04 30.49 0.09 1.16 16 25 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 26 O -0.39 -8.60 9.75 -148.98 -1.45 -10.06 16 27 C 0.04 0.91 6.59 72.50 0.48 1.39 16 28 C -0.15 -2.55 6.10 32.18 0.20 -2.36 16 29 C -0.12 -1.49 3.74 -9.38 -0.04 -1.52 16 30 H 0.15 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.03 1.21 6.86 -2.39 -0.02 1.19 16 32 H 0.06 3.29 6.07 -2.39 -0.01 3.27 16 33 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.06 3.30 6.07 -2.38 -0.01 3.28 16 36 H 0.03 1.21 6.86 -2.39 -0.02 1.20 16 37 H 0.26 13.54 8.31 -92.71 -0.77 12.77 16 38 H 0.05 2.32 8.14 -2.39 -0.02 2.31 16 39 H 0.05 2.35 8.14 -2.39 -0.02 2.33 16 40 H 0.41 14.91 5.63 -92.71 -0.52 14.39 16 41 H 0.42 10.64 4.14 -92.71 -0.38 10.25 16 42 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 43 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 44 H 0.04 0.80 6.51 -2.39 -0.02 0.78 16 45 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 46 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 47 H 0.11 0.55 8.14 -2.38 -0.02 0.53 16 48 H 0.05 1.46 4.47 -2.39 -0.01 1.45 16 49 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 50 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 51 H 0.07 1.43 7.40 -2.39 -0.02 1.42 16 Total: -1.00 -61.21 379.13 2.15 -59.05 By element: Atomic # 1 Polarization: 34.59 SS G_CDS: 0.05 Total: 34.64 kcal Atomic # 6 Polarization: -0.49 SS G_CDS: 4.74 Total: 4.26 kcal Atomic # 7 Polarization: -89.89 SS G_CDS: -3.10 Total: -93.00 kcal Atomic # 8 Polarization: -47.90 SS G_CDS: -1.56 Total: -49.46 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.51 kcal Total: -61.21 2.15 -59.05 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000422419829.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.352 kcal (2) G-P(sol) polarization free energy of solvation -61.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds