Wall clock time and date at job start Tue Mar 31 2020 20:59:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.46948 * 2 1 4 4 C 1.52997 * 109.47307 * 120.00188 * 2 1 3 5 5 O 1.45198 * 109.47249 * 240.00709 * 2 1 3 6 6 C 1.34634 * 117.00420 * 59.99322 * 5 2 1 7 7 O 1.21514 * 119.99843 * 0.02562 * 6 5 2 8 8 N 1.34773 * 120.00327 * 180.02562 * 6 5 2 9 9 C 1.46931 * 120.62959 * 359.71776 * 8 6 5 10 10 C 1.52765 * 109.00867 * 233.59006 * 9 8 6 11 11 C 1.53044 * 109.38086 * 305.58511 * 10 9 8 12 12 C 1.50697 * 109.46170 * 181.26067 * 11 10 9 13 13 O 1.21294 * 120.00219 * 260.51396 * 12 11 10 14 14 N 1.34779 * 119.99893 * 80.50520 * 12 11 10 15 15 C 1.37096 * 119.99995 * 183.43662 * 14 12 11 16 16 H 1.07992 * 120.00179 * 129.60909 * 15 14 12 17 17 C 1.38951 * 119.99657 * 309.60570 * 15 14 12 18 18 N 1.31419 * 119.99708 * 169.31080 * 17 15 14 19 19 Si 1.86795 * 120.00403 * 349.31615 * 17 15 14 20 20 H 1.48501 * 109.47103 * 95.11387 * 19 17 15 21 21 H 1.48496 * 109.47241 * 215.11833 * 19 17 15 22 22 H 1.48510 * 109.46854 * 335.11585 * 19 17 15 23 23 C 1.46504 * 119.99797 * 3.43177 * 14 12 11 24 24 C 1.52997 * 117.49990 * 246.68234 * 23 14 12 25 25 C 1.53003 * 117.49481 * 178.05966 * 23 14 12 26 26 C 1.53045 * 109.53774 * 61.24046 * 11 10 9 27 27 C 1.46922 * 120.63346 * 180.02562 * 8 6 5 28 28 H 1.08993 * 109.47510 * 59.99697 * 1 2 3 29 29 H 1.09000 * 109.46995 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46974 * 299.99629 * 1 2 3 31 31 H 1.09001 * 109.46980 * 60.00375 * 3 2 1 32 32 H 1.09000 * 109.47340 * 179.97438 * 3 2 1 33 33 H 1.09003 * 109.47385 * 300.00333 * 3 2 1 34 34 H 1.09000 * 109.47074 * 60.00071 * 4 2 1 35 35 H 1.09000 * 109.47220 * 180.02562 * 4 2 1 36 36 H 1.09001 * 109.47253 * 300.00012 * 4 2 1 37 37 H 1.09001 * 109.58464 * 353.41971 * 9 8 6 38 38 H 1.08993 * 109.58717 * 113.84582 * 9 8 6 39 39 H 1.09000 * 109.56287 * 185.55368 * 10 9 8 40 40 H 1.08997 * 109.38610 * 65.51350 * 10 9 8 41 41 H 1.08999 * 109.46485 * 301.22480 * 11 10 9 42 42 H 0.97000 * 119.99827 * 179.97438 * 18 17 15 43 43 H 1.08995 * 115.54668 * 32.39237 * 23 14 12 44 44 H 1.09003 * 117.49914 * 0.02562 * 24 23 14 45 45 H 1.08998 * 117.50144 * 145.02549 * 24 23 14 46 46 H 1.09003 * 117.49650 * 214.98072 * 25 23 14 47 47 H 1.08995 * 117.50169 * 359.97438 * 25 23 14 48 48 H 1.08996 * 109.49743 * 178.67733 * 26 11 10 49 49 H 1.09006 * 109.49148 * 58.58513 * 26 11 10 50 50 H 1.09000 * 109.58569 * 246.15226 * 27 8 6 51 51 H 1.08998 * 109.58760 * 6.43060 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 8 2.0140 -0.6843 -1.1856 6 6 1.6522 -0.1727 -2.3772 7 8 0.9515 0.8189 -2.4252 8 7 2.0672 -0.7603 -3.5169 9 6 2.9199 -1.9562 -3.4751 10 6 4.1673 -1.7076 -4.3212 11 6 3.7487 -1.2827 -5.7306 12 6 4.9775 -1.0670 -6.5758 13 8 5.3982 0.0558 -6.7589 14 7 5.6092 -2.1217 -7.1281 15 6 6.7666 -1.9326 -7.8382 16 1 7.6388 -2.5303 -7.6182 17 6 6.8174 -0.9720 -8.8409 18 7 7.9711 -0.6422 -9.3769 19 14 5.2460 -0.1494 -9.4268 20 1 5.0581 1.1324 -8.7011 21 1 5.3404 0.1163 -10.8847 22 1 4.0904 -1.0433 -9.1603 23 6 5.0590 -3.4702 -6.9695 24 6 5.8656 -4.4689 -6.1371 25 6 5.7974 -4.6198 -7.6581 26 6 2.9464 0.0185 -5.6558 27 6 1.6811 -0.2134 -4.8248 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6766 1.9563 0.8900 32 1 3.1299 1.4426 0.0005 33 1 1.6765 1.9564 -0.8900 34 1 1.6767 -1.7489 1.2491 35 1 3.1300 -0.7209 1.2494 36 1 1.6767 -0.2075 2.1392 37 1 3.2132 -2.1599 -2.4453 38 1 2.3731 -2.8091 -3.8771 39 1 4.7583 -2.6217 -4.3773 40 1 4.7626 -0.9169 -3.8645 41 1 3.1332 -2.0634 -6.1776 42 1 8.0065 0.0281 -10.0771 43 1 3.9722 -3.5310 -6.9150 44 1 6.8054 -4.1225 -5.7070 45 1 5.3094 -5.1870 -5.5346 46 1 5.1962 -5.4373 -8.0563 47 1 6.6922 -4.3728 -8.2294 48 1 2.6687 0.3330 -6.6618 49 1 3.5529 0.7932 -5.1863 50 1 1.0310 -0.9211 -5.3393 51 1 1.1551 0.7309 -4.6851 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490773021.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:59:14 Heat of formation + Delta-G solvation = -78.302617 kcal Electronic energy + Delta-G solvation = -31549.571446 eV Core-core repulsion = 27450.525209 eV Total energy + Delta-G solvation = -4099.046236 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.97909 -39.68360 -38.16370 -36.66704 -36.21912 -34.28421 -33.06636 -32.55130 -31.38519 -31.02329 -27.62246 -27.55674 -26.66169 -24.62191 -23.35172 -22.44817 -21.89060 -21.42010 -20.62871 -19.54005 -18.90426 -17.93374 -17.12019 -16.74699 -16.24201 -16.18856 -15.37023 -15.14931 -14.74001 -14.66498 -14.43730 -14.21679 -13.91294 -13.70506 -13.63215 -13.42480 -13.05789 -12.86262 -12.70994 -12.58831 -12.35301 -12.14617 -12.09140 -12.01247 -11.93391 -11.59031 -11.44789 -11.24627 -11.17026 -11.08326 -10.97595 -10.68374 -10.51706 -10.48587 -10.23885 -10.09513 -10.02020 -9.89643 -9.78645 -8.83763 -8.62646 -8.39264 -7.45764 -6.19341 -4.08219 2.07324 2.80126 3.26609 3.41884 3.61227 3.71560 3.75047 4.27208 4.46400 4.51615 4.53665 4.56255 4.70346 4.80417 4.95172 4.98656 5.11040 5.20236 5.24465 5.29878 5.33010 5.33790 5.37220 5.46769 5.49977 5.51881 5.55417 5.59071 5.64288 5.66418 5.74119 5.75683 5.79372 5.93217 5.96391 6.05137 6.09520 6.09811 6.16712 6.28661 6.31677 6.39003 6.52322 6.53492 6.59942 6.85643 7.33043 7.83213 8.01623 8.29382 8.73533 8.88453 9.38998 9.77474 10.85708 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.018150 B = 0.003180 C = 0.002946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.355501 B = 8803.554798 C = 9502.878401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.135 3.865 3 C -0.184 4.184 4 C -0.140 4.140 5 O -0.362 6.362 6 C 0.654 3.346 7 O -0.573 6.573 8 N -0.592 5.592 9 C 0.115 3.885 10 C -0.120 4.120 11 C -0.104 4.104 12 C 0.469 3.531 13 O -0.540 6.540 14 N -0.441 5.441 15 C -0.341 4.341 16 H 0.092 0.908 17 C 0.088 3.912 18 N -0.874 5.874 19 Si 0.918 3.082 20 H -0.260 1.260 21 H -0.310 1.310 22 H -0.281 1.281 23 C 0.064 3.936 24 C -0.199 4.199 25 C -0.170 4.170 26 C -0.118 4.118 27 C 0.129 3.871 28 H 0.087 0.913 29 H 0.058 0.942 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.060 0.940 33 H 0.088 0.912 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.078 0.922 37 H 0.092 0.908 38 H 0.071 0.929 39 H 0.087 0.913 40 H 0.072 0.928 41 H 0.083 0.917 42 H 0.272 0.728 43 H 0.106 0.894 44 H 0.093 0.907 45 H 0.087 0.913 46 H 0.087 0.913 47 H 0.113 0.887 48 H 0.078 0.922 49 H 0.080 0.920 50 H 0.071 0.929 51 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.509 -5.147 16.874 22.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.099 3.901 3 C -0.241 4.241 4 C -0.197 4.197 5 O -0.277 6.277 6 C 0.409 3.591 7 O -0.463 6.463 8 N -0.332 5.332 9 C -0.007 4.007 10 C -0.159 4.159 11 C -0.126 4.126 12 C 0.259 3.741 13 O -0.422 6.422 14 N -0.162 5.162 15 C -0.468 4.468 16 H 0.110 0.890 17 C -0.120 4.120 18 N -0.510 5.510 19 Si 0.749 3.251 20 H -0.185 1.185 21 H -0.239 1.239 22 H -0.207 1.207 23 C -0.041 4.041 24 C -0.238 4.238 25 C -0.208 4.208 26 C -0.157 4.157 27 C 0.008 3.992 28 H 0.106 0.894 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.107 0.893 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.097 0.903 37 H 0.110 0.890 38 H 0.089 0.911 39 H 0.105 0.895 40 H 0.091 0.909 41 H 0.102 0.898 42 H 0.082 0.918 43 H 0.124 0.876 44 H 0.112 0.888 45 H 0.105 0.895 46 H 0.105 0.895 47 H 0.131 0.869 48 H 0.097 0.903 49 H 0.098 0.902 50 H 0.089 0.911 51 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -14.381 -4.149 16.717 22.438 hybrid contribution -0.598 0.271 -0.436 0.788 sum -14.979 -3.878 16.281 22.461 Atomic orbital electron populations 1.22506 0.94136 1.02776 1.04524 1.22041 0.94247 0.92275 0.81585 1.22519 1.01721 0.95367 1.04508 1.21853 1.02366 1.01012 0.94512 1.86292 1.71510 1.56257 1.13649 1.17945 0.78804 0.81249 0.81084 1.90870 1.41916 1.26794 1.86729 1.47031 1.52423 1.30178 1.03584 1.21683 0.90981 0.86299 1.01771 1.21756 0.97109 1.03252 0.93759 1.21274 0.96499 0.98665 0.96161 1.20296 0.86294 0.85853 0.81678 1.90518 1.67201 1.22910 1.61556 1.43143 1.23344 1.02741 1.46977 1.18665 0.88593 1.23802 1.15695 0.89042 1.25400 0.97277 0.95285 0.94058 1.69695 1.24994 1.30499 1.25769 0.86166 0.82491 0.81533 0.74877 1.18541 1.23933 1.20697 1.21805 0.94744 0.82813 1.04755 1.23294 1.03182 1.03061 0.94263 1.23138 1.04114 0.98703 0.94838 1.21788 0.95529 0.97776 1.00575 1.21707 0.96933 1.00306 0.80283 0.89378 0.92288 0.91302 0.91311 0.92086 0.89327 0.91525 0.91396 0.90274 0.88967 0.91089 0.89473 0.90912 0.89846 0.91828 0.87600 0.88808 0.89489 0.89507 0.86922 0.90308 0.90151 0.91111 0.88506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.75 8.37 37.16 0.31 -1.44 16 2 C 0.14 1.38 1.13 -90.62 -0.10 1.28 16 3 C -0.18 -1.93 8.37 37.16 0.31 -1.62 16 4 C -0.14 -1.04 8.85 37.16 0.33 -0.71 16 5 O -0.36 -4.52 8.53 -40.31 -0.34 -4.86 16 6 C 0.65 9.21 7.74 54.05 0.42 9.62 16 7 O -0.57 -9.02 11.29 -19.28 -0.22 -9.24 16 8 N -0.59 -7.76 2.98 -178.85 -0.53 -8.29 16 9 C 0.12 1.31 6.42 -3.93 -0.03 1.28 16 10 C -0.12 -1.68 5.28 -26.83 -0.14 -1.82 16 11 C -0.10 -1.72 1.79 -91.73 -0.16 -1.88 16 12 C 0.47 10.61 5.05 -10.99 -0.06 10.55 16 13 O -0.54 -14.57 11.86 5.54 0.07 -14.51 16 14 N -0.44 -10.12 2.39 -107.73 -0.26 -10.38 16 15 C -0.34 -9.35 8.23 -14.93 -0.12 -9.47 16 16 H 0.09 2.65 7.66 -52.49 -0.40 2.24 16 17 C 0.09 2.56 5.06 -17.46 -0.09 2.48 16 18 N -0.87 -26.58 13.96 55.50 0.77 -25.81 16 19 Si 0.92 24.31 24.61 -169.99 -4.18 20.13 16 20 H -0.26 -7.22 6.52 56.52 0.37 -6.85 16 21 H -0.31 -8.08 7.11 56.52 0.40 -7.68 16 22 H -0.28 -7.06 7.04 56.52 0.40 -6.66 16 23 C 0.06 1.14 5.22 -67.93 -0.35 0.78 16 24 C -0.20 -3.00 9.91 -26.73 -0.26 -3.27 16 25 C -0.17 -2.82 9.82 -26.73 -0.26 -3.08 16 26 C -0.12 -1.88 4.81 -26.63 -0.13 -2.01 16 27 C 0.13 1.67 6.43 -3.73 -0.02 1.65 16 28 H 0.09 1.06 5.88 -51.93 -0.31 0.75 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.09 1.15 5.88 -51.93 -0.31 0.85 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.09 0.97 6.93 -51.93 -0.36 0.61 16 38 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.09 1.16 7.07 -51.93 -0.37 0.80 16 40 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 41 H 0.08 1.21 6.40 -51.93 -0.33 0.88 16 42 H 0.27 7.82 8.31 -40.82 -0.34 7.48 16 43 H 0.11 1.59 6.49 -51.93 -0.34 1.25 16 44 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 45 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 46 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 47 H 0.11 2.19 6.83 -51.93 -0.35 1.84 16 48 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 49 H 0.08 1.44 7.94 -51.93 -0.41 1.03 16 50 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 51 H 0.10 1.30 7.00 -51.93 -0.36 0.94 16 LS Contribution 389.15 15.07 5.86 5.86 Total: -1.00 -33.98 389.15 -7.83 -41.80 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -8.63 Total: 2.94 kcal Atomic # 6 Polarization: 2.71 SS G_CDS: -0.36 Total: 2.34 kcal Atomic # 7 Polarization: -44.46 SS G_CDS: -0.02 Total: -44.48 kcal Atomic # 8 Polarization: -28.11 SS G_CDS: -0.50 Total: -28.60 kcal Atomic # 14 Polarization: 24.31 SS G_CDS: -4.18 Total: 20.13 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -33.98 -7.83 -41.80 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490773021.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.498 kcal (2) G-P(sol) polarization free energy of solvation -33.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds