Wall clock time and date at job start Tue Mar 31 2020 21:11:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47269 * 2 1 4 4 C 1.52997 * 109.47232 * 239.99603 * 2 1 3 5 5 O 1.45206 * 109.46989 * 119.99587 * 2 1 3 6 6 C 1.34639 * 116.99892 * 59.99951 * 5 2 1 7 7 O 1.21513 * 119.99857 * 359.97438 * 6 5 2 8 8 N 1.34773 * 119.99616 * 179.97438 * 6 5 2 9 9 C 1.47165 * 120.70799 * 179.97438 * 8 6 5 10 10 C 1.53888 * 108.03039 * 132.76006 * 9 8 6 11 11 H 1.08992 * 112.10004 * 181.91950 * 10 9 8 12 12 C 1.54552 * 107.82821 * 306.51071 * 10 9 8 13 13 C 1.54273 * 104.85362 * 89.07177 * 12 10 9 14 14 C 1.54551 * 104.84761 * 359.97438 * 13 12 10 15 15 H 1.09002 * 112.18232 * 146.41177 * 14 13 12 16 16 C 1.47159 * 120.71326 * 359.72613 * 8 6 5 17 17 N 1.48306 * 107.20580 * 58.36083 * 10 9 8 18 18 C 1.34782 * 128.07319 * 106.70347 * 17 10 9 19 19 O 1.21281 * 119.99697 * 0.02562 * 18 17 10 20 20 C 1.50694 * 120.00087 * 180.02562 * 18 17 10 21 21 C 1.52997 * 109.47331 * 180.02562 * 20 18 17 22 22 C 1.50699 * 109.47628 * 179.97438 * 21 20 18 23 23 H 1.08001 * 119.99333 * 0.02562 * 22 21 20 24 24 C 1.37875 * 120.00481 * 180.02562 * 22 21 20 25 25 N 1.31517 * 119.99568 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 120.00189 * 180.02562 * 24 22 21 27 27 H 1.48493 * 109.47181 * 59.99777 * 26 24 22 28 28 H 1.48493 * 109.47045 * 179.97438 * 26 24 22 29 29 H 1.48501 * 109.46638 * 299.99476 * 26 24 22 30 30 H 1.09000 * 109.47140 * 300.00547 * 1 2 3 31 31 H 1.09001 * 109.47230 * 59.99691 * 1 2 3 32 32 H 1.09001 * 109.47375 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47362 * 180.02562 * 3 2 1 34 34 H 1.09002 * 109.46716 * 299.99747 * 3 2 1 35 35 H 1.09000 * 109.47486 * 59.99665 * 3 2 1 36 36 H 1.09001 * 109.46832 * 300.00199 * 4 2 1 37 37 H 1.09002 * 109.47153 * 60.00008 * 4 2 1 38 38 H 1.08996 * 109.46952 * 180.02562 * 4 2 1 39 39 H 1.08993 * 109.75755 * 252.39495 * 9 8 6 40 40 H 1.09005 * 109.74507 * 13.07959 * 9 8 6 41 41 H 1.09011 * 110.36053 * 207.91484 * 12 10 9 42 42 H 1.08997 * 110.36582 * 330.22624 * 12 10 9 43 43 H 1.09000 * 110.36602 * 241.15385 * 13 12 10 44 44 H 1.08998 * 110.46233 * 118.88443 * 13 12 10 45 45 H 1.09000 * 109.75009 * 346.87437 * 16 8 6 46 46 H 1.09004 * 109.74882 * 107.60381 * 16 8 6 47 47 H 1.09001 * 109.47435 * 300.00128 * 20 18 17 48 48 H 1.08999 * 109.47066 * 60.00110 * 20 18 17 49 49 H 1.09000 * 109.47306 * 300.00310 * 21 20 18 50 50 H 1.08999 * 109.47137 * 59.99931 * 21 20 18 51 51 H 0.97001 * 119.99905 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6844 1.1857 6 6 1.6521 -1.9723 1.3385 7 8 0.9508 -2.5094 0.5042 8 7 2.0680 -2.6655 2.4169 9 6 1.6814 -4.0736 2.5999 10 6 2.9445 -4.8697 2.9726 11 1 2.7386 -5.9334 3.0916 12 6 4.0168 -4.5872 1.8960 13 6 4.7708 -3.3416 2.4062 14 6 4.0852 -2.9842 3.7444 15 1 4.7864 -2.5675 4.4676 16 6 2.9227 -2.0323 3.4338 17 7 3.4961 -4.2639 4.2088 18 6 3.4681 -4.7601 5.4616 19 8 2.9427 -5.8315 5.6778 20 6 4.0898 -3.9836 6.5936 21 6 3.9226 -4.7634 7.8993 22 6 4.5448 -3.9873 9.0313 23 1 5.0123 -3.0329 8.8387 24 6 4.5173 -4.4954 10.3127 25 7 3.9475 -5.6573 10.5472 26 14 5.2879 -3.5329 11.7160 27 1 4.6170 -2.2138 11.8386 28 1 5.1257 -4.2899 12.9831 29 1 6.7331 -3.3297 11.4417 30 1 -0.3633 0.5139 0.8899 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9562 -0.8900 35 1 1.6767 1.9564 0.8899 36 1 1.6766 -1.7490 -1.2491 37 1 1.6767 -0.2075 -2.1392 38 1 3.1300 -0.7217 -1.2489 39 1 0.9465 -4.1529 3.4009 40 1 1.2596 -4.4632 1.6733 41 1 4.6982 -5.4335 1.8081 42 1 3.5446 -4.3780 0.9361 43 1 4.6693 -2.5200 1.6971 44 1 5.8233 -3.5735 2.5689 45 1 3.3124 -1.0888 3.0516 46 1 2.3449 -1.8526 4.3405 47 1 5.1508 -3.8351 6.3929 48 1 3.5979 -3.0150 6.6830 49 1 2.8617 -4.9123 8.1003 50 1 4.4148 -5.7318 7.8096 51 1 3.9277 -6.0147 11.4487 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000856465938.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:11:33 Heat of formation + Delta-G solvation = -110.102358 kcal Electronic energy + Delta-G solvation = -31121.942666 eV Core-core repulsion = 27021.517490 eV Total energy + Delta-G solvation = -4100.425177 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.49286 -40.30179 -38.17511 -37.03205 -34.80018 -33.82789 -33.51559 -32.09469 -31.45285 -30.62101 -27.72184 -27.67008 -27.21494 -25.75244 -24.96018 -23.00521 -22.07791 -21.22276 -20.26686 -19.84975 -18.71436 -17.75701 -16.91802 -16.82047 -16.70703 -15.93079 -15.55209 -15.34921 -15.00466 -14.81014 -14.50365 -14.44611 -14.33928 -13.81729 -13.71787 -13.38717 -13.03613 -12.99492 -12.80089 -12.67682 -12.45026 -12.23782 -12.19951 -12.18003 -12.08462 -11.71691 -11.61851 -11.54055 -11.35221 -11.18501 -11.07064 -10.92848 -10.67119 -10.62987 -10.62686 -10.20669 -9.98628 -9.68557 -9.29980 -9.22444 -9.05681 -8.40517 -8.32036 -5.97525 -4.02262 1.88242 2.63847 3.08791 3.14634 3.33198 3.38233 3.39675 3.54006 4.31849 4.40540 4.43474 4.45474 4.46679 4.59490 4.61671 4.67833 4.90779 5.02781 5.13981 5.15084 5.19218 5.22762 5.36986 5.37363 5.38207 5.39579 5.45712 5.48268 5.54873 5.55177 5.61419 5.63378 5.68677 5.71737 5.85462 5.97068 5.98904 6.01785 6.14774 6.17602 6.20475 6.24411 6.41838 6.85455 7.15328 7.71855 7.82076 7.83244 8.04948 8.13327 8.35752 8.67372 9.05745 9.61334 11.13367 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.018219 B = 0.002538 C = 0.002383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.495203 B =11031.680671 C =11749.151532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.136 3.864 3 C -0.141 4.141 4 C -0.182 4.182 5 O -0.362 6.362 6 C 0.655 3.345 7 O -0.571 6.571 8 N -0.588 5.588 9 C 0.121 3.879 10 C 0.117 3.883 11 H 0.114 0.886 12 C -0.125 4.125 13 C -0.125 4.125 14 C 0.117 3.883 15 H 0.117 0.883 16 C 0.102 3.898 17 N -0.628 5.628 18 C 0.533 3.467 19 O -0.529 6.529 20 C -0.124 4.124 21 C 0.037 3.963 22 C -0.528 4.528 23 H 0.055 0.945 24 C 0.058 3.942 25 N -0.889 5.889 26 Si 0.893 3.107 27 H -0.277 1.277 28 H -0.287 1.287 29 H -0.277 1.277 30 H 0.059 0.941 31 H 0.069 0.931 32 H 0.087 0.913 33 H 0.067 0.933 34 H 0.079 0.921 35 H 0.067 0.933 36 H 0.087 0.913 37 H 0.068 0.932 38 H 0.059 0.941 39 H 0.076 0.924 40 H 0.102 0.898 41 H 0.073 0.927 42 H 0.075 0.925 43 H 0.074 0.926 44 H 0.074 0.926 45 H 0.100 0.900 46 H 0.077 0.923 47 H 0.079 0.921 48 H 0.079 0.921 49 H 0.023 0.977 50 H 0.023 0.977 51 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.878 12.834 -25.346 28.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.099 3.901 3 C -0.198 4.198 4 C -0.240 4.240 5 O -0.277 6.277 6 C 0.410 3.590 7 O -0.461 6.461 8 N -0.328 5.328 9 C -0.002 4.002 10 C 0.013 3.987 11 H 0.132 0.868 12 C -0.163 4.163 13 C -0.164 4.164 14 C 0.012 3.988 15 H 0.135 0.865 16 C -0.022 4.022 17 N -0.365 5.365 18 C 0.325 3.675 19 O -0.404 6.404 20 C -0.164 4.164 21 C 0.000 4.000 22 C -0.566 4.566 23 H 0.073 0.927 24 C -0.143 4.143 25 N -0.528 5.528 26 Si 0.721 3.279 27 H -0.202 1.202 28 H -0.213 1.213 29 H -0.202 1.202 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.106 0.894 33 H 0.086 0.914 34 H 0.098 0.902 35 H 0.086 0.914 36 H 0.106 0.894 37 H 0.087 0.913 38 H 0.078 0.922 39 H 0.094 0.906 40 H 0.121 0.879 41 H 0.091 0.909 42 H 0.094 0.906 43 H 0.093 0.907 44 H 0.093 0.907 45 H 0.119 0.881 46 H 0.095 0.905 47 H 0.097 0.903 48 H 0.097 0.903 49 H 0.042 0.958 50 H 0.042 0.958 51 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.448 11.960 -25.228 28.027 hybrid contribution 0.373 0.598 0.786 1.056 sum -2.075 12.558 -24.442 27.558 Atomic orbital electron populations 1.22513 0.94044 1.05074 1.02432 1.22056 0.94358 0.91513 0.82143 1.21859 1.02261 0.92541 1.03131 1.22507 1.01503 1.03500 0.96446 1.86298 1.71474 1.23616 1.46310 1.17905 0.78781 0.80554 0.81720 1.90883 1.41571 1.70449 1.43223 1.46917 1.52449 1.12109 1.21346 1.22240 0.96738 0.78030 1.03145 1.22547 0.92735 0.98870 0.84550 0.86797 1.22479 0.97528 0.98310 0.97996 1.22505 0.99806 0.98170 0.95888 1.22549 0.94400 0.85460 0.96415 0.86537 1.22257 0.91811 0.96193 0.91924 1.49545 1.59111 1.21199 1.06668 1.21362 0.78499 0.86074 0.81557 1.90689 1.44702 1.22396 1.82566 1.21859 1.00085 0.99913 0.94502 1.18904 0.98174 0.95098 0.87829 1.21159 1.37501 1.05311 0.92633 0.92657 1.25023 0.95459 0.95000 0.98868 1.69988 1.43713 1.17948 1.21135 0.86649 0.79748 0.79961 0.81557 1.20244 1.21287 1.20238 0.92174 0.91241 0.89381 0.91436 0.90224 0.91410 0.89388 0.91256 0.92202 0.90589 0.87935 0.90865 0.90639 0.90698 0.90689 0.88134 0.90470 0.90259 0.90303 0.95833 0.95831 0.92867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.58 8.37 37.16 0.31 -1.27 16 2 C 0.14 1.16 1.13 -90.62 -0.10 1.05 16 3 C -0.14 -0.85 8.85 37.16 0.33 -0.52 16 4 C -0.18 -1.48 8.37 37.16 0.31 -1.17 16 5 O -0.36 -3.78 8.58 -40.32 -0.35 -4.13 16 6 C 0.66 7.74 7.74 54.05 0.42 8.16 16 7 O -0.57 -7.71 11.35 -19.28 -0.22 -7.93 16 8 N -0.59 -6.54 2.26 -177.59 -0.40 -6.94 16 9 C 0.12 1.40 5.90 -3.22 -0.02 1.38 16 10 C 0.12 1.42 4.12 -65.66 -0.27 1.15 16 11 H 0.11 1.48 7.92 -51.93 -0.41 1.07 16 12 C -0.12 -1.23 6.18 -25.25 -0.16 -1.38 16 13 C -0.13 -1.14 6.18 -25.25 -0.16 -1.29 16 14 C 0.12 1.23 3.97 -65.88 -0.26 0.96 16 15 H 0.12 1.12 7.42 -51.93 -0.39 0.73 16 16 C 0.10 1.02 5.87 -3.45 -0.02 1.00 16 17 N -0.63 -8.86 2.75 -153.28 -0.42 -9.28 16 18 C 0.53 10.12 7.92 -10.99 -0.09 10.04 16 19 O -0.53 -12.33 16.29 5.56 0.09 -12.24 16 20 C -0.12 -2.45 4.63 -27.89 -0.13 -2.58 16 21 C 0.04 0.99 4.26 -27.88 -0.12 0.88 16 22 C -0.53 -14.75 9.11 -34.44 -0.31 -15.07 16 23 H 0.06 1.45 7.74 -52.49 -0.41 1.04 16 24 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 25 N -0.89 -27.26 13.29 55.43 0.74 -26.52 16 26 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 27 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 28 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 29 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.09 0.97 5.88 -51.93 -0.31 0.67 16 33 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.09 0.92 5.88 -51.93 -0.31 0.61 16 37 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.10 1.15 7.11 -51.93 -0.37 0.78 16 41 H 0.07 0.70 8.14 -51.92 -0.42 0.28 16 42 H 0.07 0.72 7.84 -51.93 -0.41 0.32 16 43 H 0.07 0.63 7.83 -51.93 -0.41 0.22 16 44 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.10 0.85 7.04 -51.93 -0.37 0.48 16 46 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 47 H 0.08 1.43 8.04 -51.93 -0.42 1.01 16 48 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 49 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 50 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 51 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 398.37 15.07 6.00 6.00 Total: -1.00 -34.36 398.37 -8.77 -43.13 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -8.83 Total: -1.46 kcal Atomic # 6 Polarization: 3.28 SS G_CDS: -0.36 Total: 2.92 kcal Atomic # 7 Polarization: -42.66 SS G_CDS: -0.09 Total: -42.74 kcal Atomic # 8 Polarization: -23.83 SS G_CDS: -0.47 Total: -24.30 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -34.36 -8.77 -43.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000856465938.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.970 kcal (2) G-P(sol) polarization free energy of solvation -34.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds