Wall clock time and date at job start Tue Mar 31 2020 21:11:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47269 * 2 1 4 4 C 1.52997 * 109.47232 * 239.99603 * 2 1 3 5 5 O 1.45206 * 109.46989 * 119.99587 * 2 1 3 6 6 C 1.34639 * 116.99892 * 59.99951 * 5 2 1 7 7 O 1.21513 * 119.99857 * 359.97438 * 6 5 2 8 8 N 1.34773 * 119.99616 * 179.97438 * 6 5 2 9 9 C 1.47165 * 120.70799 * 179.97438 * 8 6 5 10 10 C 1.53888 * 108.03039 * 132.76006 * 9 8 6 11 11 H 1.08992 * 112.10004 * 181.91950 * 10 9 8 12 12 C 1.54552 * 107.82821 * 306.51071 * 10 9 8 13 13 C 1.54273 * 104.85362 * 89.07177 * 12 10 9 14 14 C 1.54551 * 104.84761 * 359.97438 * 13 12 10 15 15 H 1.09002 * 112.18232 * 146.41177 * 14 13 12 16 16 C 1.47159 * 120.71326 * 359.72613 * 8 6 5 17 17 N 1.48306 * 107.20580 * 58.36083 * 10 9 8 18 18 C 1.34782 * 128.07319 * 106.70347 * 17 10 9 19 19 O 1.21281 * 119.99697 * 0.02562 * 18 17 10 20 20 C 1.50694 * 120.00087 * 180.02562 * 18 17 10 21 21 C 1.52997 * 109.47331 * 180.02562 * 20 18 17 22 22 C 1.50699 * 109.47628 * 179.97438 * 21 20 18 23 23 H 1.08001 * 119.99333 * 0.02562 * 22 21 20 24 24 C 1.37875 * 120.00481 * 180.02562 * 22 21 20 25 25 N 1.31517 * 119.99568 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 120.00189 * 180.02562 * 24 22 21 27 27 H 1.48493 * 109.47181 * 59.99777 * 26 24 22 28 28 H 1.48493 * 109.47045 * 179.97438 * 26 24 22 29 29 H 1.48501 * 109.46638 * 299.99476 * 26 24 22 30 30 H 1.09000 * 109.47140 * 300.00547 * 1 2 3 31 31 H 1.09001 * 109.47230 * 59.99691 * 1 2 3 32 32 H 1.09001 * 109.47375 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47362 * 180.02562 * 3 2 1 34 34 H 1.09002 * 109.46716 * 299.99747 * 3 2 1 35 35 H 1.09000 * 109.47486 * 59.99665 * 3 2 1 36 36 H 1.09001 * 109.46832 * 300.00199 * 4 2 1 37 37 H 1.09002 * 109.47153 * 60.00008 * 4 2 1 38 38 H 1.08996 * 109.46952 * 180.02562 * 4 2 1 39 39 H 1.08993 * 109.75755 * 252.39495 * 9 8 6 40 40 H 1.09005 * 109.74507 * 13.07959 * 9 8 6 41 41 H 1.09011 * 110.36053 * 207.91484 * 12 10 9 42 42 H 1.08997 * 110.36582 * 330.22624 * 12 10 9 43 43 H 1.09000 * 110.36602 * 241.15385 * 13 12 10 44 44 H 1.08998 * 110.46233 * 118.88443 * 13 12 10 45 45 H 1.09000 * 109.75009 * 346.87437 * 16 8 6 46 46 H 1.09004 * 109.74882 * 107.60381 * 16 8 6 47 47 H 1.09001 * 109.47435 * 300.00128 * 20 18 17 48 48 H 1.08999 * 109.47066 * 60.00110 * 20 18 17 49 49 H 1.09000 * 109.47306 * 300.00310 * 21 20 18 50 50 H 1.08999 * 109.47137 * 59.99931 * 21 20 18 51 51 H 0.97001 * 119.99905 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6844 1.1857 6 6 1.6521 -1.9723 1.3385 7 8 0.9508 -2.5094 0.5042 8 7 2.0680 -2.6655 2.4169 9 6 1.6814 -4.0736 2.5999 10 6 2.9445 -4.8697 2.9726 11 1 2.7386 -5.9334 3.0916 12 6 4.0168 -4.5872 1.8960 13 6 4.7708 -3.3416 2.4062 14 6 4.0852 -2.9842 3.7444 15 1 4.7864 -2.5675 4.4676 16 6 2.9227 -2.0323 3.4338 17 7 3.4961 -4.2639 4.2088 18 6 3.4681 -4.7601 5.4616 19 8 2.9427 -5.8315 5.6778 20 6 4.0898 -3.9836 6.5936 21 6 3.9226 -4.7634 7.8993 22 6 4.5448 -3.9873 9.0313 23 1 5.0123 -3.0329 8.8387 24 6 4.5173 -4.4954 10.3127 25 7 3.9475 -5.6573 10.5472 26 14 5.2879 -3.5329 11.7160 27 1 4.6170 -2.2138 11.8386 28 1 5.1257 -4.2899 12.9831 29 1 6.7331 -3.3297 11.4417 30 1 -0.3633 0.5139 0.8899 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9562 -0.8900 35 1 1.6767 1.9564 0.8899 36 1 1.6766 -1.7490 -1.2491 37 1 1.6767 -0.2075 -2.1392 38 1 3.1300 -0.7217 -1.2489 39 1 0.9465 -4.1529 3.4009 40 1 1.2596 -4.4632 1.6733 41 1 4.6982 -5.4335 1.8081 42 1 3.5446 -4.3780 0.9361 43 1 4.6693 -2.5200 1.6971 44 1 5.8233 -3.5735 2.5689 45 1 3.3124 -1.0888 3.0516 46 1 2.3449 -1.8526 4.3405 47 1 5.1508 -3.8351 6.3929 48 1 3.5979 -3.0150 6.6830 49 1 2.8617 -4.9123 8.1003 50 1 4.4148 -5.7318 7.8096 51 1 3.9277 -6.0147 11.4487 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000856465938.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:11:32 Heat of formation + Delta-G solvation = -130.690649 kcal Electronic energy + Delta-G solvation = -31122.835442 eV Core-core repulsion = 27021.517490 eV Total energy + Delta-G solvation = -4101.317952 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.43774 -41.27330 -39.54525 -37.93820 -35.71639 -35.56892 -34.61917 -33.42745 -32.56566 -32.21040 -28.33699 -28.31312 -28.23590 -27.50153 -25.89212 -24.35875 -23.30136 -22.33402 -21.39909 -20.79374 -19.64741 -19.15525 -18.35784 -17.75146 -17.66546 -17.38871 -16.61554 -16.50874 -16.38163 -16.21407 -15.80332 -15.27573 -15.19614 -14.97387 -14.70875 -14.39478 -14.21070 -14.08524 -13.88255 -13.82364 -13.49977 -13.32196 -13.17616 -13.04196 -12.90441 -12.81100 -12.76665 -12.52824 -12.44973 -12.43742 -12.32520 -12.15154 -11.99707 -11.91515 -11.60299 -11.46504 -11.34662 -11.31033 -11.06004 -10.74304 -10.55166 -10.34656 -9.49482 -8.16715 -6.30851 1.03284 1.43268 1.47748 1.55331 1.62046 1.77333 1.89741 2.44176 2.74808 3.16430 3.38658 3.53387 3.68108 3.79059 3.81727 3.85747 3.96355 4.00123 4.09374 4.24033 4.34175 4.42336 4.45686 4.52400 4.53317 4.61195 4.61893 4.66565 4.67153 4.74094 4.82057 4.84532 4.90821 4.93138 4.93661 5.02961 5.08937 5.15050 5.16416 5.29348 5.32988 5.38452 5.40372 5.49190 5.51524 5.63053 5.85742 6.17918 6.25589 6.52777 6.87685 7.21618 7.24641 7.39555 8.95809 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.018219 B = 0.002538 C = 0.002383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.495203 B =11031.680671 C =11749.151532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.126 3.874 3 C -0.136 4.136 4 C -0.178 4.178 5 O -0.362 6.362 6 C 0.655 3.345 7 O -0.591 6.591 8 N -0.588 5.588 9 C 0.129 3.871 10 C 0.113 3.887 11 H 0.098 0.902 12 C -0.116 4.116 13 C -0.117 4.117 14 C 0.112 3.888 15 H 0.135 0.865 16 C 0.104 3.896 17 N -0.621 5.621 18 C 0.534 3.466 19 O -0.588 6.588 20 C -0.110 4.110 21 C 0.044 3.956 22 C -0.541 4.541 23 H 0.078 0.922 24 C -0.008 4.008 25 N -0.939 5.939 26 Si 0.973 3.027 27 H -0.262 1.262 28 H -0.290 1.290 29 H -0.261 1.261 30 H 0.057 0.943 31 H 0.089 0.911 32 H 0.060 0.940 33 H 0.073 0.927 34 H 0.099 0.901 35 H 0.067 0.933 36 H 0.061 0.939 37 H 0.087 0.913 38 H 0.065 0.935 39 H 0.058 0.942 40 H 0.106 0.894 41 H 0.077 0.923 42 H 0.081 0.919 43 H 0.090 0.910 44 H 0.087 0.913 45 H 0.125 0.875 46 H 0.069 0.931 47 H 0.105 0.895 48 H 0.103 0.897 49 H -0.020 1.020 50 H -0.019 1.019 51 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.044 16.522 -26.785 31.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.090 3.910 3 C -0.193 4.193 4 C -0.235 4.235 5 O -0.276 6.276 6 C 0.411 3.589 7 O -0.482 6.482 8 N -0.328 5.328 9 C 0.006 3.994 10 C 0.009 3.991 11 H 0.116 0.884 12 C -0.155 4.155 13 C -0.155 4.155 14 C 0.008 3.992 15 H 0.153 0.847 16 C -0.019 4.019 17 N -0.355 5.355 18 C 0.326 3.674 19 O -0.467 6.467 20 C -0.150 4.150 21 C 0.006 3.994 22 C -0.579 4.579 23 H 0.096 0.904 24 C -0.205 4.205 25 N -0.579 5.579 26 Si 0.797 3.203 27 H -0.186 1.186 28 H -0.216 1.216 29 H -0.185 1.185 30 H 0.076 0.924 31 H 0.108 0.892 32 H 0.079 0.921 33 H 0.092 0.908 34 H 0.118 0.882 35 H 0.086 0.914 36 H 0.080 0.920 37 H 0.106 0.894 38 H 0.084 0.916 39 H 0.076 0.924 40 H 0.124 0.876 41 H 0.096 0.904 42 H 0.100 0.900 43 H 0.109 0.891 44 H 0.106 0.894 45 H 0.143 0.857 46 H 0.088 0.912 47 H 0.123 0.877 48 H 0.121 0.879 49 H -0.002 1.002 50 H -0.001 1.001 51 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.503 15.721 -26.733 31.017 hybrid contribution -0.297 -0.534 1.114 1.271 sum -0.800 15.187 -25.618 29.793 Atomic orbital electron populations 1.22479 0.94461 1.03493 1.03375 1.22399 0.94240 0.92763 0.81627 1.21878 1.02653 0.90573 1.04149 1.22453 1.01822 1.02108 0.97099 1.86305 1.71359 1.22625 1.47329 1.17973 0.78476 0.80994 0.81452 1.90887 1.42362 1.71013 1.43977 1.46921 1.52579 1.11736 1.21560 1.22045 0.96024 0.78716 1.02623 1.22682 0.93926 0.98148 0.84357 0.88376 1.22429 0.96773 0.99152 0.97126 1.22499 1.00046 0.97997 0.94964 1.22924 0.94951 0.83649 0.97635 0.84696 1.22343 0.91249 0.96867 0.91470 1.49391 1.57929 1.22487 1.05682 1.21086 0.78121 0.85243 0.82999 1.90667 1.47445 1.24840 1.83794 1.21591 1.02133 0.99643 0.91596 1.18680 0.94762 0.94261 0.91708 1.21671 1.37081 1.06057 0.93080 0.90364 1.26145 0.95942 0.95987 1.02423 1.70179 1.45582 1.20264 1.21847 0.85379 0.79358 0.78482 0.77072 1.18638 1.21572 1.18541 0.92359 0.89201 0.92125 0.90802 0.88202 0.91426 0.91970 0.89391 0.91568 0.92366 0.87571 0.90400 0.90009 0.89103 0.89418 0.85659 0.91238 0.87653 0.87881 1.00170 1.00065 0.92915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.87 8.37 71.98 0.60 -2.27 16 2 C 0.13 1.86 1.13 -10.80 -0.01 1.84 16 3 C -0.14 -1.19 8.85 71.98 0.64 -0.56 16 4 C -0.18 -2.50 8.37 71.98 0.60 -1.90 16 5 O -0.36 -6.76 8.58 -55.49 -0.48 -7.23 16 6 C 0.66 14.65 7.74 129.79 1.00 15.66 16 7 O -0.59 -15.76 11.35 19.80 0.22 -15.54 16 8 N -0.59 -12.34 2.26 -946.19 -2.14 -14.48 16 9 C 0.13 3.01 5.90 86.55 0.51 3.52 16 10 C 0.11 2.73 4.12 45.47 0.19 2.92 16 11 H 0.10 2.70 7.92 -2.39 -0.02 2.68 16 12 C -0.12 -2.08 6.18 31.55 0.20 -1.89 16 13 C -0.12 -1.73 6.18 31.55 0.20 -1.54 16 14 C 0.11 2.05 3.97 45.31 0.18 2.23 16 15 H 0.14 2.05 7.42 -2.39 -0.02 2.03 16 16 C 0.10 1.82 5.87 86.40 0.51 2.33 16 17 N -0.62 -17.14 2.75 -757.24 -2.08 -19.22 16 18 C 0.53 20.72 7.92 87.65 0.69 21.42 16 19 O -0.59 -29.17 16.29 -3.03 -0.05 -29.22 16 20 C -0.11 -4.33 4.63 29.85 0.14 -4.19 16 21 C 0.04 2.41 4.26 29.85 0.13 2.53 16 22 C -0.54 -30.35 9.11 25.60 0.23 -30.11 16 23 H 0.08 3.94 7.74 -2.91 -0.02 3.91 16 24 C -0.01 -0.44 5.46 84.65 0.46 0.02 16 25 N -0.94 -59.57 13.29 21.45 0.28 -59.28 16 26 Si 0.97 43.82 29.54 68.60 2.03 45.84 16 27 H -0.26 -11.08 7.11 99.48 0.71 -10.38 16 28 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 29 H -0.26 -11.01 7.11 99.48 0.71 -10.31 16 30 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.06 1.32 5.88 -2.39 -0.01 1.31 16 33 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 35 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.06 1.23 5.88 -2.39 -0.01 1.22 16 37 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.11 2.42 7.11 -2.38 -0.02 2.40 16 41 H 0.08 1.35 8.14 -2.38 -0.02 1.33 16 42 H 0.08 1.41 7.84 -2.39 -0.02 1.39 16 43 H 0.09 1.14 7.83 -2.39 -0.02 1.12 16 44 H 0.09 1.15 8.14 -2.39 -0.02 1.14 16 45 H 0.13 1.64 7.04 -2.39 -0.02 1.63 16 46 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 47 H 0.11 3.58 8.04 -2.39 -0.02 3.56 16 48 H 0.10 3.54 8.14 -2.39 -0.02 3.52 16 49 H -0.02 -1.27 8.10 -2.39 -0.02 -1.29 16 50 H -0.02 -1.20 8.10 -2.39 -0.02 -1.22 16 51 H 0.26 15.64 8.31 -92.71 -0.77 14.87 16 Total: -1.00 -79.41 398.37 4.96 -74.46 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: 0.90 Total: 14.66 kcal Atomic # 6 Polarization: 3.75 SS G_CDS: 6.27 Total: 10.02 kcal Atomic # 7 Polarization: -89.05 SS G_CDS: -3.93 Total: -92.99 kcal Atomic # 8 Polarization: -51.69 SS G_CDS: -0.30 Total: -51.99 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.84 kcal Total: -79.41 4.96 -74.46 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000856465938.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.234 kcal (2) G-P(sol) polarization free energy of solvation -79.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds