Wall clock time and date at job start Tue Mar 31 2020 21:44:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47280 * 2 1 4 4 H 1.08994 * 109.47825 * 304.97485 * 3 2 1 5 5 O 1.42908 * 109.48002 * 65.00076 * 3 2 1 6 6 C 1.42903 * 114.09444 * 181.14277 * 5 3 2 7 7 C 1.53089 * 109.41612 * 298.83691 * 6 5 3 8 8 C 1.53177 * 109.16229 * 57.61120 * 7 6 5 9 9 C 1.53092 * 109.48217 * 184.94207 * 3 2 1 10 10 H 1.09001 * 109.52528 * 62.49829 * 9 3 2 11 11 C 1.50698 * 109.52277 * 302.31473 * 9 3 2 12 12 O 1.21286 * 120.00311 * 325.62811 * 11 9 3 13 13 N 1.34777 * 120.00361 * 145.62630 * 11 9 3 14 14 C 1.47129 * 121.05341 * 5.31721 * 13 11 9 15 15 C 1.52770 * 108.97179 * 232.16938 * 14 13 11 16 16 O 1.43099 * 109.42060 * 306.11224 * 15 14 13 17 17 C 1.42498 * 113.97097 * 59.83475 * 16 15 14 18 18 C 1.53462 * 113.76054 * 73.16904 * 17 16 15 19 19 N 1.47670 * 85.96882 * 91.28795 * 18 17 16 20 20 C 1.36937 * 134.45623 * 204.26305 * 19 18 17 21 21 H 1.08001 * 120.00167 * 180.02562 * 20 19 18 22 22 C 1.38813 * 119.99928 * 0.03549 * 20 19 18 23 23 N 1.31620 * 120.00223 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 120.00033 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47251 * 59.99754 * 24 22 20 26 26 H 1.48501 * 109.47370 * 180.02562 * 24 22 20 27 27 H 1.48504 * 109.47064 * 299.99956 * 24 22 20 28 28 C 1.47671 * 91.08725 * 24.29051 * 19 18 17 29 29 C 1.47343 * 121.05888 * 185.58815 * 13 11 9 30 30 H 1.08993 * 109.47288 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46675 * 300.00187 * 1 2 3 32 32 H 1.08999 * 109.46569 * 59.99615 * 1 2 3 33 33 H 1.09005 * 109.47306 * 119.99922 * 2 1 3 34 34 H 1.08998 * 109.47560 * 240.00004 * 2 1 3 35 35 H 1.08993 * 109.48312 * 58.82218 * 6 5 3 36 36 H 1.09002 * 109.47416 * 178.84466 * 6 5 3 37 37 H 1.08996 * 109.52712 * 177.51529 * 7 6 5 38 38 H 1.09005 * 109.52370 * 297.64452 * 7 6 5 39 39 H 1.09005 * 109.54611 * 62.88938 * 8 7 6 40 40 H 1.08999 * 109.54361 * 183.06390 * 8 7 6 41 41 H 1.08997 * 109.59104 * 351.99065 * 14 13 11 42 42 H 1.08997 * 109.60149 * 112.44737 * 14 13 11 43 43 H 1.09009 * 109.56266 * 186.06539 * 15 14 13 44 44 H 1.08994 * 109.34436 * 66.03359 * 15 14 13 45 45 H 1.09000 * 113.79207 * 205.54818 * 18 17 16 46 46 H 1.09002 * 113.79442 * 337.02615 * 18 17 16 47 47 H 0.96998 * 119.99823 * 179.97438 * 23 22 20 48 48 H 1.09000 * 113.78842 * 221.43782 * 28 19 18 49 49 H 1.09001 * 113.78932 * 89.96451 * 28 19 18 50 50 H 1.08997 * 109.75145 * 251.23966 * 29 13 11 51 51 H 1.09002 * 109.74752 * 11.92069 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6059 1.9815 -0.8420 5 8 1.6621 2.0816 1.2211 6 6 2.0688 3.4484 1.3143 7 6 3.5958 3.5310 1.2428 8 6 4.0735 2.8885 -0.0630 9 6 3.5659 1.4446 -0.1243 10 1 3.8545 0.9970 -1.0754 11 6 4.1646 0.6518 1.0089 12 8 3.6371 0.6617 2.1010 13 7 5.2862 -0.0683 0.8088 14 6 6.0098 -0.0062 -0.4707 15 6 6.2252 -1.4271 -0.9889 16 8 6.8662 -2.2104 0.0227 17 6 6.1246 -2.3087 1.2355 18 6 4.8956 -3.2223 1.1364 19 7 5.7941 -4.3052 1.5845 20 6 5.7922 -5.6684 1.4547 21 1 6.5898 -6.2532 1.8885 22 6 4.7654 -6.2985 0.7652 23 7 3.7932 -5.5857 0.2367 24 14 4.7632 -8.1580 0.5874 25 1 4.7284 -8.7840 1.9336 26 1 3.5679 -8.5800 -0.1863 27 1 5.9919 -8.5884 -0.1270 28 6 6.6950 -3.3289 2.2295 29 6 5.8233 -0.9471 1.8624 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3632 0.5139 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.8934 -0.5138 -0.8899 35 1 1.6352 4.0138 0.4896 36 1 1.7259 3.8657 2.2611 37 1 3.9057 4.5756 1.2694 38 1 4.0294 3.0007 2.0908 39 1 3.6801 3.4495 -0.9108 40 1 5.1630 2.8950 -0.0954 41 1 5.4243 0.5605 -1.1946 42 1 6.9761 0.4756 -0.3213 43 1 6.8529 -1.3995 -1.8797 44 1 5.2611 -1.8711 -1.2364 45 1 4.1088 -2.9800 1.8507 46 1 4.5244 -3.3514 0.1197 47 1 3.0758 -6.0261 -0.2453 48 1 7.7535 -3.5428 2.0813 49 1 6.4433 -3.1182 3.2689 50 1 6.7392 -0.5180 2.2686 51 1 5.0864 -1.0620 2.6574 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053285221.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:44:11 Heat of formation + Delta-G solvation = -58.529543 kcal Electronic energy + Delta-G solvation = -32447.877448 eV Core-core repulsion = 28349.688637 eV Total energy + Delta-G solvation = -4098.188812 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.93246 -39.59822 -37.84951 -36.17164 -34.40644 -34.04591 -33.68105 -32.22689 -30.35835 -29.77171 -27.83166 -26.21371 -25.47788 -25.06007 -23.97437 -23.27040 -22.12862 -21.31099 -20.94036 -18.87357 -18.56768 -17.29546 -16.83451 -16.49447 -16.03587 -15.78762 -15.70100 -15.15888 -14.80981 -14.59734 -14.44253 -14.27687 -14.03055 -13.78142 -13.56316 -13.35050 -13.27030 -13.01044 -12.82300 -12.55284 -12.38585 -12.19413 -11.98690 -11.63755 -11.59390 -11.32850 -11.23912 -11.11590 -10.85549 -10.81282 -10.79300 -10.69994 -10.61822 -10.37067 -10.21659 -9.91274 -9.57505 -9.50217 -9.22778 -9.17582 -8.79614 -8.16997 -6.85272 -5.72613 -3.04678 2.80410 3.02690 3.42732 3.46263 3.47554 3.79025 4.06109 4.33957 4.46950 4.50367 4.61368 4.75375 4.80919 4.94264 4.97684 5.09431 5.13981 5.17772 5.21947 5.28050 5.31505 5.40433 5.40909 5.42796 5.47965 5.55052 5.60379 5.63360 5.72661 5.76657 5.80767 5.84698 5.97309 5.99152 6.07808 6.11229 6.13481 6.32066 6.34807 6.43791 6.50047 6.51652 6.62530 7.03105 7.21046 7.30749 7.52130 7.54286 7.83535 8.00690 8.39016 9.07331 9.74074 10.60754 11.44438 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.015223 B = 0.003669 C = 0.003249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.825358 B = 7629.782955 C = 8616.351832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.124 4.124 3 C 0.112 3.888 4 H 0.062 0.938 5 O -0.352 6.352 6 C 0.065 3.935 7 C -0.160 4.160 8 C -0.108 4.108 9 C -0.146 4.146 10 H 0.099 0.901 11 C 0.526 3.474 12 O -0.514 6.514 13 N -0.613 5.613 14 C 0.072 3.928 15 C 0.046 3.954 16 O -0.342 6.342 17 C 0.050 3.950 18 C 0.154 3.846 19 N -0.603 5.603 20 C -0.219 4.219 21 H 0.080 0.920 22 C -0.007 4.007 23 N -0.922 5.922 24 Si 0.912 3.088 25 H -0.285 1.285 26 H -0.290 1.290 27 H -0.284 1.284 28 C 0.135 3.865 29 C 0.102 3.898 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.047 0.953 33 H 0.081 0.919 34 H 0.074 0.926 35 H 0.043 0.957 36 H 0.090 0.910 37 H 0.070 0.930 38 H 0.080 0.920 39 H 0.073 0.927 40 H 0.070 0.930 41 H 0.090 0.910 42 H 0.073 0.927 43 H 0.100 0.900 44 H 0.060 0.940 45 H 0.032 0.968 46 H 0.075 0.925 47 H 0.253 0.747 48 H 0.055 0.945 49 H 0.050 0.950 50 H 0.065 0.935 51 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.134 20.741 -4.261 21.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.161 4.161 3 C 0.054 3.946 4 H 0.080 0.920 5 O -0.270 6.270 6 C -0.012 4.012 7 C -0.197 4.197 8 C -0.146 4.146 9 C -0.167 4.167 10 H 0.117 0.883 11 C 0.313 3.687 12 O -0.388 6.388 13 N -0.348 5.348 14 C -0.052 4.052 15 C -0.032 4.032 16 O -0.260 6.260 17 C 0.008 3.992 18 C 0.028 3.972 19 N -0.329 5.329 20 C -0.347 4.347 21 H 0.098 0.902 22 C -0.203 4.203 23 N -0.570 5.570 24 Si 0.742 3.258 25 H -0.212 1.212 26 H -0.216 1.216 27 H -0.211 1.211 28 C 0.009 3.991 29 C -0.021 4.021 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.066 0.934 33 H 0.100 0.900 34 H 0.092 0.908 35 H 0.061 0.939 36 H 0.108 0.892 37 H 0.089 0.911 38 H 0.099 0.901 39 H 0.092 0.908 40 H 0.088 0.912 41 H 0.108 0.892 42 H 0.092 0.908 43 H 0.118 0.882 44 H 0.078 0.922 45 H 0.050 0.950 46 H 0.094 0.906 47 H 0.063 0.937 48 H 0.073 0.927 49 H 0.067 0.933 50 H 0.084 0.916 51 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -0.490 20.233 -3.647 20.565 hybrid contribution 0.016 -0.747 -0.430 0.863 sum -0.474 19.485 -4.077 19.913 Atomic orbital electron populations 1.21650 0.95079 1.01778 1.01635 1.21631 0.97024 0.93791 1.03665 1.21914 0.90124 0.94957 0.87615 0.92027 1.88089 1.77399 1.23719 1.37767 1.22454 0.93414 0.83868 1.01475 1.22221 0.97752 1.01050 0.98712 1.21492 1.01182 0.93279 0.98637 1.22157 0.98465 0.97024 0.99071 0.88332 1.20206 0.79587 0.79272 0.89624 1.90733 1.60203 1.62516 1.25387 1.48212 1.26323 1.44982 1.15250 1.22384 0.97442 0.99259 0.86068 1.22783 0.99549 0.89286 0.91563 1.87929 1.44323 1.71032 1.22678 1.23691 0.96996 0.91827 0.86711 1.22652 0.90554 0.83704 1.00297 1.45772 1.24150 1.01351 1.61627 1.18954 1.06600 0.79785 1.29356 0.90211 1.24751 0.96952 0.97955 1.00665 1.69804 1.12875 1.33865 1.40417 0.86199 0.76929 0.84979 0.77647 1.21192 1.21595 1.21100 1.22492 0.96202 0.86844 0.93571 1.22201 0.99355 0.89647 0.90941 0.92509 0.92037 0.93374 0.90021 0.90754 0.93887 0.89166 0.91139 0.90125 0.90789 0.91157 0.89228 0.90835 0.88245 0.92176 0.95002 0.90650 0.93694 0.92657 0.93283 0.91634 0.88186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 9.81 37.16 0.36 -1.42 16 2 C -0.12 -1.69 5.24 -26.73 -0.14 -1.83 16 3 C 0.11 1.36 2.24 -26.68 -0.06 1.30 16 4 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 5 O -0.35 -4.85 8.50 -55.60 -0.47 -5.33 16 6 C 0.07 0.68 6.84 37.20 0.25 0.93 16 7 C -0.16 -1.59 5.74 -26.59 -0.15 -1.74 16 8 C -0.11 -0.97 5.52 -26.55 -0.15 -1.12 16 9 C -0.15 -1.64 1.94 -91.63 -0.18 -1.82 16 10 H 0.10 0.94 5.96 -51.93 -0.31 0.63 16 11 C 0.53 7.83 5.16 -10.99 -0.06 7.77 16 12 O -0.51 -9.45 12.85 -14.81 -0.19 -9.64 16 13 N -0.61 -8.96 3.03 -172.71 -0.52 -9.48 16 14 C 0.07 0.84 6.45 -3.82 -0.02 0.81 16 15 C 0.05 0.67 6.87 37.04 0.25 0.92 16 16 O -0.34 -6.55 10.52 -35.23 -0.37 -6.92 16 17 C 0.05 0.97 1.21 -90.31 -0.11 0.86 16 18 C 0.15 3.73 6.65 -3.17 -0.02 3.70 16 19 N -0.60 -15.95 3.70 -180.34 -0.67 -16.61 16 20 C -0.22 -6.31 10.70 -15.06 -0.16 -6.48 16 21 H 0.08 2.20 7.83 -52.49 -0.41 1.79 16 22 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 23 N -0.92 -27.74 11.39 55.49 0.63 -27.11 16 24 Si 0.91 22.54 29.55 -169.99 -5.02 17.51 16 25 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 26 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 27 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 28 C 0.14 2.87 8.33 -3.18 -0.03 2.84 16 29 C 0.10 1.69 5.76 -3.64 -0.02 1.67 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.06 0.80 7.82 -51.93 -0.41 0.39 16 32 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.08 1.41 6.79 -51.93 -0.35 1.06 16 34 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.08 1.04 6.69 -51.93 -0.35 0.69 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.09 0.79 5.39 -51.93 -0.28 0.51 16 42 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.10 1.17 8.14 -51.92 -0.42 0.75 16 44 H 0.06 0.98 7.19 -51.93 -0.37 0.61 16 45 H 0.03 0.82 7.94 -51.93 -0.41 0.41 16 46 H 0.08 2.02 6.30 -51.93 -0.33 1.70 16 47 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 48 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 49 H 0.05 0.96 8.09 -51.93 -0.42 0.54 16 50 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 51 H 0.10 1.82 6.96 -51.93 -0.36 1.46 16 LS Contribution 385.96 15.07 5.82 5.82 Total: -1.00 -34.68 385.96 -9.75 -44.43 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: -8.63 Total: 1.22 kcal Atomic # 6 Polarization: 6.44 SS G_CDS: -0.32 Total: 6.12 kcal Atomic # 7 Polarization: -52.65 SS G_CDS: -0.56 Total: -53.21 kcal Atomic # 8 Polarization: -20.86 SS G_CDS: -1.03 Total: -21.89 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -34.68 -9.75 -44.43 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053285221.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.102 kcal (2) G-P(sol) polarization free energy of solvation -34.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds