Wall clock time and date at job start Tue Mar 31 2020 22:34:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53009 * 109.47122 * 2 1 4 4 O 1.45204 * 109.47539 * 119.99852 * 2 1 3 5 5 C 1.34224 * 116.99678 * 89.99830 * 4 2 1 6 6 O 1.20823 * 120.00286 * 0.02562 * 5 4 2 7 7 C 1.50704 * 119.99540 * 180.02562 * 5 4 2 8 8 C 1.53047 * 109.45900 * 179.97438 * 7 5 4 9 9 C 1.53194 * 109.31153 * 181.38483 * 8 7 5 10 10 N 1.46920 * 108.77494 * 305.36965 * 9 8 7 11 11 C 1.34786 * 120.62832 * 233.58135 * 10 9 8 12 12 O 1.21585 * 119.99988 * 354.94486 * 11 10 9 13 13 N 1.34772 * 119.99987 * 174.93867 * 11 10 9 14 14 C 1.46498 * 120.00142 * 185.03114 * 13 11 10 15 15 C 1.53001 * 109.47040 * 185.00843 * 14 13 11 16 16 C 1.50703 * 115.54944 * 275.56988 * 15 14 13 17 17 H 1.08000 * 119.99900 * 114.79576 * 16 15 14 18 18 C 1.37880 * 119.99936 * 294.79529 * 16 15 14 19 19 N 1.31514 * 120.00012 * 352.06984 * 18 16 15 20 20 Si 1.86794 * 119.99842 * 172.06663 * 18 16 15 21 21 H 1.48500 * 109.47389 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.47520 * 120.00197 * 20 18 16 23 23 H 1.48501 * 109.47457 * 240.00219 * 20 18 16 24 24 C 1.53003 * 117.49737 * 129.86904 * 15 14 13 25 25 C 1.52996 * 117.50101 * 61.24169 * 15 14 13 26 26 C 1.46927 * 118.74388 * 53.86477 * 10 9 8 27 27 C 1.53039 * 109.46443 * 300.07098 * 7 5 4 28 28 H 1.09001 * 109.47190 * 60.00733 * 1 2 3 29 29 H 1.09008 * 109.46854 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47433 * 299.99923 * 1 2 3 31 31 H 1.09001 * 109.47433 * 240.00077 * 2 1 3 32 32 H 1.09000 * 109.47147 * 179.97438 * 3 2 1 33 33 H 1.09006 * 109.46886 * 299.99949 * 3 2 1 34 34 H 1.09001 * 109.46904 * 59.99753 * 3 2 1 35 35 H 1.09005 * 109.45751 * 60.03314 * 7 5 4 36 36 H 1.09004 * 109.49410 * 61.43865 * 8 7 5 37 37 H 1.08993 * 109.52766 * 301.36024 * 8 7 5 38 38 H 1.08996 * 109.58257 * 185.57906 * 9 8 7 39 39 H 1.08999 * 109.70330 * 65.22838 * 9 8 7 40 40 H 0.97008 * 119.99775 * 5.02446 * 13 11 10 41 41 H 1.08998 * 109.46969 * 305.00506 * 14 13 11 42 42 H 1.08994 * 109.47322 * 65.00623 * 14 13 11 43 43 H 0.97003 * 119.99721 * 185.00083 * 19 18 16 44 44 H 1.09003 * 117.50095 * 359.97438 * 24 15 14 45 45 H 1.09000 * 117.50029 * 145.02187 * 24 15 14 46 46 H 1.08994 * 117.50255 * 214.97500 * 25 15 14 47 47 H 1.08998 * 117.50054 * 359.97438 * 25 15 14 48 48 H 1.08996 * 109.58751 * 65.91646 * 26 10 9 49 49 H 1.08998 * 109.58755 * 186.35100 * 26 10 9 50 50 H 1.08999 * 109.49457 * 298.56922 * 27 7 5 51 51 H 1.08998 * 109.49339 * 58.62821 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0141 -0.6844 1.1856 5 6 2.2172 -2.0074 1.0851 6 8 1.9982 -2.5747 0.0411 7 6 2.7184 -2.7852 2.2746 8 6 2.8625 -4.2608 1.8951 9 6 3.3389 -5.0539 3.1161 10 7 4.5714 -4.4392 3.6276 11 6 5.6837 -5.1787 3.8085 12 8 5.6487 -6.3817 3.6359 13 7 6.8348 -4.5846 4.1806 14 6 8.0685 -5.3694 4.2703 15 6 9.1910 -4.4928 4.8293 16 6 9.9156 -3.6415 3.8186 17 1 9.8481 -2.5650 3.8719 18 6 10.6645 -4.2371 2.8259 19 7 10.8756 -5.5350 2.8505 20 14 11.3792 -3.2006 1.4461 21 1 10.9993 -1.7791 1.6469 22 1 12.8591 -3.3232 1.4503 23 1 10.8470 -3.6753 0.1436 24 6 10.0058 -5.0490 5.9989 25 6 9.0042 -3.9164 6.2342 26 6 4.5668 -3.0044 3.9442 27 6 4.0779 -2.2328 2.7090 28 1 -0.3634 0.5137 -0.8901 29 1 -0.3633 -1.0278 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 3.1300 1.4426 0.0005 33 1 1.6766 1.9564 -0.8901 34 1 1.6766 1.9564 0.8900 35 1 2.0085 -2.6897 3.0963 36 1 3.5907 -4.3599 1.0901 37 1 1.8989 -4.6475 1.5634 38 1 3.5380 -6.0857 2.8266 39 1 2.5717 -5.0331 3.8901 40 1 6.8463 -3.6372 4.3889 41 1 7.9098 -6.2216 4.9310 42 1 8.3456 -5.7256 3.2781 43 1 11.4615 -5.9435 2.1943 44 1 9.7418 -6.0392 6.3703 45 1 11.0661 -4.7993 6.0375 46 1 9.4057 -2.9218 6.4276 47 1 8.0814 -4.1613 6.7601 48 1 3.8968 -2.8176 4.7834 49 1 5.5763 -2.6837 4.2013 50 1 4.7949 -2.3507 1.8965 51 1 3.9789 -1.1759 2.9564 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000884313830.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:36 Heat of formation + Delta-G solvation = -99.540750 kcal Electronic energy + Delta-G solvation = -30295.401749 eV Core-core repulsion = 26195.434558 eV Total energy + Delta-G solvation = -4099.967191 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.03529 -39.89031 -37.77807 -36.93519 -36.42430 -33.67866 -33.47445 -32.54727 -32.04629 -31.03335 -27.68769 -27.01458 -25.90544 -24.94796 -23.30868 -22.91647 -21.40645 -21.13840 -20.45278 -19.39457 -19.13252 -18.16466 -17.74735 -16.71406 -16.26202 -16.08438 -15.65876 -15.21522 -14.68649 -14.64669 -14.45582 -14.43537 -14.11131 -13.84361 -13.53907 -13.49708 -13.32017 -12.97276 -12.69432 -12.68140 -12.62018 -12.38197 -12.09347 -11.94016 -11.70328 -11.51316 -11.41620 -11.30832 -11.01868 -10.97477 -10.92934 -10.85691 -10.78484 -10.51859 -10.45207 -10.30126 -9.71009 -9.43731 -9.04614 -8.60375 -8.58331 -8.22021 -7.96309 -6.08557 -4.15224 1.99894 2.38824 3.01633 3.25166 3.34680 3.35959 3.72261 4.27115 4.33435 4.36163 4.40402 4.46359 4.52592 4.57390 4.75912 4.87562 4.96499 5.12776 5.13264 5.15233 5.24862 5.31073 5.35582 5.36450 5.41283 5.46610 5.53785 5.64814 5.65638 5.69823 5.73943 5.89213 5.92078 6.01450 6.12458 6.27674 6.31304 6.47554 6.61803 6.65332 6.69168 6.89742 7.04807 7.31046 7.33325 7.50468 7.53864 7.55614 7.84137 8.34434 8.55418 8.84515 9.16178 9.49793 10.99198 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.011756 B = 0.002875 C = 0.002551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2381.161808 B = 9736.936826 C =10973.373020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.078 3.922 3 C -0.150 4.150 4 O -0.352 6.352 5 C 0.466 3.534 6 O -0.506 6.506 7 C -0.076 4.076 8 C -0.120 4.120 9 C 0.134 3.866 10 N -0.638 5.638 11 C 0.702 3.298 12 O -0.597 6.597 13 N -0.726 5.726 14 C 0.180 3.820 15 C 0.035 3.965 16 C -0.500 4.500 17 H 0.061 0.939 18 C 0.073 3.927 19 N -0.873 5.873 20 Si 0.889 3.111 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.283 1.283 24 C -0.164 4.164 25 C -0.208 4.208 26 C 0.115 3.885 27 C -0.127 4.127 28 H 0.074 0.926 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.084 0.916 32 H 0.066 0.934 33 H 0.077 0.923 34 H 0.068 0.932 35 H 0.110 0.890 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.099 0.901 39 H 0.063 0.937 40 H 0.392 0.608 41 H 0.039 0.961 42 H 0.077 0.923 43 H 0.262 0.738 44 H 0.065 0.935 45 H 0.082 0.918 46 H 0.077 0.923 47 H 0.067 0.933 48 H 0.071 0.929 49 H 0.089 0.911 50 H 0.077 0.923 51 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.043 11.761 -0.943 23.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.023 3.977 3 C -0.207 4.207 4 O -0.269 6.269 5 C 0.309 3.691 6 O -0.393 6.393 7 C -0.096 4.096 8 C -0.158 4.158 9 C 0.010 3.990 10 N -0.378 5.378 11 C 0.404 3.596 12 O -0.476 6.476 13 N -0.380 5.380 14 C 0.057 3.943 15 C 0.034 3.966 16 C -0.537 4.537 17 H 0.079 0.921 18 C -0.131 4.131 19 N -0.509 5.509 20 Si 0.717 3.283 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.209 1.209 24 C -0.203 4.203 25 C -0.246 4.246 26 C -0.009 4.009 27 C -0.166 4.166 28 H 0.093 0.907 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.102 0.898 32 H 0.085 0.915 33 H 0.096 0.904 34 H 0.087 0.913 35 H 0.128 0.872 36 H 0.097 0.903 37 H 0.101 0.899 38 H 0.117 0.883 39 H 0.081 0.919 40 H 0.228 0.772 41 H 0.058 0.942 42 H 0.095 0.905 43 H 0.072 0.928 44 H 0.084 0.916 45 H 0.100 0.900 46 H 0.096 0.904 47 H 0.085 0.915 48 H 0.089 0.911 49 H 0.107 0.893 50 H 0.096 0.904 51 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -20.038 10.545 -1.564 22.697 hybrid contribution 0.434 1.032 -0.860 1.412 sum -19.604 11.577 -2.424 22.896 Atomic orbital electron populations 1.22206 0.94358 1.03012 1.03073 1.22740 0.94526 0.93188 0.87202 1.21895 1.02348 0.93359 1.03117 1.86574 1.76911 1.22375 1.41046 1.23839 0.73867 0.81167 0.90200 1.90657 1.47828 1.70059 1.30764 1.21106 0.99198 0.94844 0.94419 1.21899 1.03122 0.91647 0.99157 1.21350 0.85024 0.98457 0.94148 1.47297 1.11376 1.08585 1.70496 1.15951 0.80227 0.85064 0.78381 1.90870 1.84566 1.12620 1.59575 1.45491 1.07661 1.13087 1.71788 1.20905 0.79982 0.91578 1.01880 1.19083 0.94521 0.96766 0.86228 1.20455 1.30595 0.92088 1.10582 0.92099 1.24983 0.95861 0.94826 0.97471 1.69975 1.35652 1.09652 1.35608 0.86584 0.78701 0.80556 0.82447 1.19725 1.21011 1.20908 1.22710 0.96652 0.95063 1.05847 1.22877 1.00217 0.97924 1.03548 1.21657 1.02539 0.80537 0.96131 1.22026 0.94620 1.00405 0.99528 0.90736 0.92025 0.91494 0.89773 0.91488 0.90434 0.91330 0.87215 0.90343 0.89947 0.88279 0.91876 0.77160 0.94239 0.90456 0.92799 0.91613 0.89989 0.90438 0.91476 0.91121 0.89280 0.90439 0.89335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.20 9.55 37.16 0.35 -0.84 16 2 C 0.08 0.67 3.18 -26.73 -0.09 0.59 16 3 C -0.15 -0.96 9.57 37.16 0.36 -0.60 16 4 O -0.35 -3.56 9.76 -39.24 -0.38 -3.94 16 5 C 0.47 5.27 7.23 36.01 0.26 5.53 16 6 O -0.51 -7.10 15.20 -18.75 -0.28 -7.39 16 7 C -0.08 -0.73 2.59 -91.73 -0.24 -0.97 16 8 C -0.12 -1.32 4.65 -26.61 -0.12 -1.44 16 9 C 0.13 1.63 6.42 -3.71 -0.02 1.60 16 10 N -0.64 -9.10 2.97 -178.24 -0.53 -9.63 16 11 C 0.70 13.52 8.29 -86.91 -0.72 12.80 16 12 O -0.60 -13.86 15.76 5.29 0.08 -13.77 16 13 N -0.73 -14.13 5.37 -65.23 -0.35 -14.48 16 14 C 0.18 4.19 5.53 -4.04 -0.02 4.16 16 15 C 0.03 0.82 1.32 -155.66 -0.21 0.61 16 16 C -0.50 -12.87 8.82 -34.44 -0.30 -13.17 16 17 H 0.06 1.55 7.83 -52.49 -0.41 1.14 16 18 C 0.07 1.94 5.22 -17.82 -0.09 1.84 16 19 N -0.87 -24.34 12.60 55.43 0.70 -23.64 16 20 Si 0.89 20.64 29.55 -169.99 -5.02 15.61 16 21 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 24 C -0.16 -3.69 9.88 -26.72 -0.26 -3.95 16 25 C -0.21 -4.19 9.78 -26.73 -0.26 -4.46 16 26 C 0.12 1.23 6.46 -3.49 -0.02 1.21 16 27 C -0.13 -1.24 5.32 -26.39 -0.14 -1.38 16 28 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.51 8.14 -51.92 -0.42 0.09 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.08 0.83 7.16 -51.93 -0.37 0.46 16 32 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.08 1.05 8.13 -51.93 -0.42 0.63 16 37 H 0.08 0.83 8.07 -51.93 -0.42 0.41 16 38 H 0.10 1.42 7.04 -51.93 -0.37 1.05 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.39 6.75 5.87 -40.82 -0.24 6.52 16 41 H 0.04 0.94 7.87 -51.93 -0.41 0.53 16 42 H 0.08 2.09 7.26 -51.93 -0.38 1.71 16 43 H 0.26 7.02 8.32 -40.82 -0.34 6.68 16 44 H 0.07 1.42 8.06 -51.93 -0.42 1.00 16 45 H 0.08 1.91 8.14 -51.93 -0.42 1.49 16 46 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 47 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 48 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 49 H 0.09 0.99 5.56 -51.93 -0.29 0.70 16 50 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 51 H 0.09 0.71 8.08 -51.93 -0.42 0.29 16 LS Contribution 411.41 15.07 6.20 6.20 Total: -1.00 -32.07 411.41 -9.89 -41.97 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: -8.77 Total: 7.57 kcal Atomic # 6 Polarization: 3.05 SS G_CDS: -1.53 Total: 1.51 kcal Atomic # 7 Polarization: -47.57 SS G_CDS: -0.18 Total: -47.75 kcal Atomic # 8 Polarization: -24.52 SS G_CDS: -0.58 Total: -25.11 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -32.07 -9.89 -41.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884313830.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.575 kcal (2) G-P(sol) polarization free energy of solvation -32.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds