Wall clock time and date at job start Tue Mar 31 2020 22:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53009 * 109.47122 * 2 1 4 4 O 1.45204 * 109.47539 * 119.99852 * 2 1 3 5 5 C 1.34224 * 116.99678 * 89.99830 * 4 2 1 6 6 O 1.20823 * 120.00286 * 0.02562 * 5 4 2 7 7 C 1.50704 * 119.99540 * 180.02562 * 5 4 2 8 8 C 1.53047 * 109.45900 * 179.97438 * 7 5 4 9 9 C 1.53194 * 109.31153 * 181.38483 * 8 7 5 10 10 N 1.46920 * 108.77494 * 305.36965 * 9 8 7 11 11 C 1.34786 * 120.62832 * 233.58135 * 10 9 8 12 12 O 1.21585 * 119.99988 * 354.94486 * 11 10 9 13 13 N 1.34772 * 119.99987 * 174.93867 * 11 10 9 14 14 C 1.46498 * 120.00142 * 185.03114 * 13 11 10 15 15 C 1.53001 * 109.47040 * 185.00843 * 14 13 11 16 16 C 1.50703 * 115.54944 * 275.56988 * 15 14 13 17 17 H 1.08000 * 119.99900 * 114.79576 * 16 15 14 18 18 C 1.37880 * 119.99936 * 294.79529 * 16 15 14 19 19 N 1.31514 * 120.00012 * 352.06984 * 18 16 15 20 20 Si 1.86794 * 119.99842 * 172.06663 * 18 16 15 21 21 H 1.48500 * 109.47389 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.47520 * 120.00197 * 20 18 16 23 23 H 1.48501 * 109.47457 * 240.00219 * 20 18 16 24 24 C 1.53003 * 117.49737 * 129.86904 * 15 14 13 25 25 C 1.52996 * 117.50101 * 61.24169 * 15 14 13 26 26 C 1.46927 * 118.74388 * 53.86477 * 10 9 8 27 27 C 1.53039 * 109.46443 * 300.07098 * 7 5 4 28 28 H 1.09001 * 109.47190 * 60.00733 * 1 2 3 29 29 H 1.09008 * 109.46854 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47433 * 299.99923 * 1 2 3 31 31 H 1.09001 * 109.47433 * 240.00077 * 2 1 3 32 32 H 1.09000 * 109.47147 * 179.97438 * 3 2 1 33 33 H 1.09006 * 109.46886 * 299.99949 * 3 2 1 34 34 H 1.09001 * 109.46904 * 59.99753 * 3 2 1 35 35 H 1.09005 * 109.45751 * 60.03314 * 7 5 4 36 36 H 1.09004 * 109.49410 * 61.43865 * 8 7 5 37 37 H 1.08993 * 109.52766 * 301.36024 * 8 7 5 38 38 H 1.08996 * 109.58257 * 185.57906 * 9 8 7 39 39 H 1.08999 * 109.70330 * 65.22838 * 9 8 7 40 40 H 0.97008 * 119.99775 * 5.02446 * 13 11 10 41 41 H 1.08998 * 109.46969 * 305.00506 * 14 13 11 42 42 H 1.08994 * 109.47322 * 65.00623 * 14 13 11 43 43 H 0.97003 * 119.99721 * 185.00083 * 19 18 16 44 44 H 1.09003 * 117.50095 * 359.97438 * 24 15 14 45 45 H 1.09000 * 117.50029 * 145.02187 * 24 15 14 46 46 H 1.08994 * 117.50255 * 214.97500 * 25 15 14 47 47 H 1.08998 * 117.50054 * 359.97438 * 25 15 14 48 48 H 1.08996 * 109.58751 * 65.91646 * 26 10 9 49 49 H 1.08998 * 109.58755 * 186.35100 * 26 10 9 50 50 H 1.08999 * 109.49457 * 298.56922 * 27 7 5 51 51 H 1.08998 * 109.49339 * 58.62821 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0141 -0.6844 1.1856 5 6 2.2172 -2.0074 1.0851 6 8 1.9982 -2.5747 0.0411 7 6 2.7184 -2.7852 2.2746 8 6 2.8625 -4.2608 1.8951 9 6 3.3389 -5.0539 3.1161 10 7 4.5714 -4.4392 3.6276 11 6 5.6837 -5.1787 3.8085 12 8 5.6487 -6.3817 3.6359 13 7 6.8348 -4.5846 4.1806 14 6 8.0685 -5.3694 4.2703 15 6 9.1910 -4.4928 4.8293 16 6 9.9156 -3.6415 3.8186 17 1 9.8481 -2.5650 3.8719 18 6 10.6645 -4.2371 2.8259 19 7 10.8756 -5.5350 2.8505 20 14 11.3792 -3.2006 1.4461 21 1 10.9993 -1.7791 1.6469 22 1 12.8591 -3.3232 1.4503 23 1 10.8470 -3.6753 0.1436 24 6 10.0058 -5.0490 5.9989 25 6 9.0042 -3.9164 6.2342 26 6 4.5668 -3.0044 3.9442 27 6 4.0779 -2.2328 2.7090 28 1 -0.3634 0.5137 -0.8901 29 1 -0.3633 -1.0278 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 3.1300 1.4426 0.0005 33 1 1.6766 1.9564 -0.8901 34 1 1.6766 1.9564 0.8900 35 1 2.0085 -2.6897 3.0963 36 1 3.5907 -4.3599 1.0901 37 1 1.8989 -4.6475 1.5634 38 1 3.5380 -6.0857 2.8266 39 1 2.5717 -5.0331 3.8901 40 1 6.8463 -3.6372 4.3889 41 1 7.9098 -6.2216 4.9310 42 1 8.3456 -5.7256 3.2781 43 1 11.4615 -5.9435 2.1943 44 1 9.7418 -6.0392 6.3703 45 1 11.0661 -4.7993 6.0375 46 1 9.4057 -2.9218 6.4276 47 1 8.0814 -4.1613 6.7601 48 1 3.8968 -2.8176 4.7834 49 1 5.5763 -2.6837 4.2013 50 1 4.7949 -2.3507 1.8965 51 1 3.9789 -1.1759 2.9564 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000884313830.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:35 Heat of formation + Delta-G solvation = -117.613713 kcal Electronic energy + Delta-G solvation = -30296.185452 eV Core-core repulsion = 26195.434558 eV Total energy + Delta-G solvation = -4100.750893 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.94520 -41.18774 -38.99909 -38.30556 -37.64199 -35.12637 -34.37972 -34.04841 -33.55496 -32.01590 -28.44487 -28.20474 -27.54677 -26.55123 -24.27494 -23.84363 -22.97566 -22.13497 -21.39478 -21.18447 -20.41675 -19.39958 -18.74771 -17.95853 -17.56738 -17.14148 -16.96036 -16.73091 -16.41862 -15.83506 -15.42744 -15.36164 -15.24278 -15.12778 -14.92054 -14.51617 -14.41493 -14.15648 -13.90973 -13.54543 -13.39921 -13.36913 -13.31804 -13.16176 -12.92411 -12.87389 -12.83415 -12.72304 -12.34351 -12.29863 -12.02932 -11.95044 -11.88723 -11.67822 -11.59023 -11.45011 -11.36103 -11.09620 -10.94728 -10.50663 -10.08487 -10.03148 -9.40028 -8.10899 -6.21668 1.13280 1.39442 1.43918 1.52485 1.61623 1.72874 2.23684 2.41441 3.02681 3.17034 3.44766 3.56780 3.63902 3.71471 3.80860 3.94237 4.01190 4.11880 4.16867 4.23989 4.30127 4.34684 4.57024 4.59239 4.65129 4.67703 4.69609 4.73472 4.76028 4.81351 4.83387 4.84083 4.85988 4.96300 4.99547 5.05599 5.10087 5.13102 5.21442 5.24062 5.27498 5.51036 5.58093 5.60518 5.62952 5.74112 5.83402 6.01684 6.37619 6.71066 6.83963 7.12070 7.46014 7.66255 8.96866 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.011756 B = 0.002875 C = 0.002551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2381.161808 B = 9736.936826 C =10973.373020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.068 3.932 3 C -0.145 4.145 4 O -0.350 6.350 5 C 0.468 3.532 6 O -0.541 6.541 7 C -0.070 4.070 8 C -0.112 4.112 9 C 0.133 3.867 10 N -0.630 5.630 11 C 0.696 3.304 12 O -0.645 6.645 13 N -0.719 5.719 14 C 0.199 3.801 15 C 0.009 3.991 16 C -0.503 4.503 17 H 0.065 0.935 18 C 0.024 3.976 19 N -0.908 5.908 20 Si 0.947 3.053 21 H -0.259 1.259 22 H -0.282 1.282 23 H -0.292 1.292 24 C -0.176 4.176 25 C -0.168 4.168 26 C 0.111 3.889 27 C -0.120 4.120 28 H 0.091 0.909 29 H 0.045 0.955 30 H 0.078 0.922 31 H 0.064 0.936 32 H 0.059 0.941 33 H 0.095 0.905 34 H 0.078 0.922 35 H 0.148 0.852 36 H 0.044 0.956 37 H 0.094 0.906 38 H 0.071 0.929 39 H 0.101 0.899 40 H 0.405 0.595 41 H 0.026 0.974 42 H 0.030 0.970 43 H 0.259 0.741 44 H 0.068 0.932 45 H 0.067 0.933 46 H 0.090 0.910 47 H 0.091 0.909 48 H 0.111 0.889 49 H 0.086 0.914 50 H 0.049 0.951 51 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.080 14.965 0.459 26.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.014 3.986 3 C -0.202 4.202 4 O -0.266 6.266 5 C 0.312 3.688 6 O -0.431 6.431 7 C -0.089 4.089 8 C -0.150 4.150 9 C 0.011 3.989 10 N -0.368 5.368 11 C 0.398 3.602 12 O -0.528 6.528 13 N -0.375 5.375 14 C 0.075 3.925 15 C 0.008 3.992 16 C -0.540 4.540 17 H 0.083 0.917 18 C -0.177 4.177 19 N -0.545 5.545 20 Si 0.773 3.227 21 H -0.183 1.183 22 H -0.208 1.208 23 H -0.218 1.218 24 C -0.215 4.215 25 C -0.205 4.205 26 C -0.011 4.011 27 C -0.159 4.159 28 H 0.110 0.890 29 H 0.064 0.936 30 H 0.097 0.903 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.114 0.886 34 H 0.097 0.903 35 H 0.165 0.835 36 H 0.063 0.937 37 H 0.112 0.888 38 H 0.089 0.911 39 H 0.119 0.881 40 H 0.244 0.756 41 H 0.045 0.955 42 H 0.049 0.951 43 H 0.068 0.932 44 H 0.087 0.913 45 H 0.086 0.914 46 H 0.109 0.891 47 H 0.109 0.891 48 H 0.129 0.871 49 H 0.104 0.896 50 H 0.068 0.932 51 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -22.112 13.840 -0.144 26.086 hybrid contribution 0.993 0.073 -1.316 1.650 sum -21.119 13.912 -1.460 25.331 Atomic orbital electron populations 1.22190 0.93076 1.02401 1.04528 1.22989 0.95664 0.93990 0.85960 1.21906 1.01901 0.91904 1.04511 1.86562 1.76666 1.21694 1.41707 1.24138 0.73051 0.81516 0.90057 1.90652 1.49509 1.70770 1.32182 1.21133 0.99943 0.93079 0.94765 1.21772 1.02592 0.93105 0.97541 1.21500 0.84828 0.97038 0.95576 1.47364 1.10288 1.10000 1.69136 1.16163 0.81178 0.84777 0.78116 1.90834 1.85492 1.14992 1.61452 1.45207 1.06743 1.13369 1.72198 1.20365 0.81624 0.91735 0.98815 1.19044 0.95012 0.97843 0.87270 1.20782 1.29885 0.92498 1.10879 0.91731 1.25695 0.96714 0.95681 0.99618 1.70100 1.36730 1.11207 1.36481 0.85676 0.77896 0.79768 0.79350 1.18264 1.20839 1.21824 1.22674 0.96416 0.96431 1.05970 1.22887 0.99978 0.97490 1.00166 1.21986 1.03546 0.77865 0.97725 1.21978 0.93845 1.01859 0.98193 0.89028 0.93622 0.90314 0.91739 0.92181 0.88634 0.90340 0.83488 0.93677 0.88785 0.91094 0.88141 0.75635 0.95529 0.95116 0.93211 0.91319 0.91397 0.89106 0.89084 0.87137 0.89607 0.93172 0.86599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.02 9.55 71.98 0.69 -1.34 16 2 C 0.07 1.07 3.18 30.60 0.10 1.17 16 3 C -0.15 -1.53 9.57 71.99 0.69 -0.84 16 4 O -0.35 -6.36 9.76 -51.36 -0.50 -6.86 16 5 C 0.47 9.90 7.23 71.24 0.52 10.42 16 6 O -0.54 -15.20 15.20 21.97 0.33 -14.87 16 7 C -0.07 -1.16 2.59 -11.51 -0.03 -1.19 16 8 C -0.11 -2.36 4.65 30.67 0.14 -2.21 16 9 C 0.13 3.07 6.42 86.36 0.55 3.63 16 10 N -0.63 -17.12 2.97 -836.08 -2.48 -19.60 16 11 C 0.70 26.97 8.29 179.05 1.49 28.46 16 12 O -0.64 -31.03 15.76 -3.98 -0.06 -31.10 16 13 N -0.72 -27.93 5.37 -478.55 -2.57 -30.51 16 14 C 0.20 9.54 5.53 86.38 0.48 10.02 16 15 C 0.01 0.43 1.32 -52.93 -0.07 0.36 16 16 C -0.50 -25.81 8.82 25.60 0.23 -25.59 16 17 H 0.06 3.20 7.83 -2.91 -0.02 3.17 16 18 C 0.02 1.27 5.22 84.66 0.44 1.71 16 19 N -0.91 -52.25 12.60 21.45 0.27 -51.98 16 20 Si 0.95 42.78 29.55 68.60 2.03 44.80 16 21 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 22 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 23 H -0.29 -13.48 7.11 99.48 0.71 -12.78 16 24 C -0.18 -7.88 9.88 30.60 0.30 -7.57 16 25 C -0.17 -6.37 9.78 30.60 0.30 -6.08 16 26 C 0.11 2.00 6.46 86.51 0.56 2.56 16 27 C -0.12 -2.02 5.32 30.82 0.16 -1.86 16 28 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.04 0.71 8.14 -2.38 -0.02 0.69 16 30 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.06 1.27 7.16 -2.39 -0.02 1.25 16 32 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.10 0.66 8.14 -2.38 -0.02 0.64 16 34 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.15 1.43 8.14 -2.38 -0.02 1.41 16 36 H 0.04 1.25 8.13 -2.38 -0.02 1.23 16 37 H 0.09 1.78 8.07 -2.39 -0.02 1.76 16 38 H 0.07 2.07 7.04 -2.39 -0.02 2.06 16 39 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.41 13.37 5.87 -92.70 -0.54 12.83 16 41 H 0.03 1.31 7.87 -2.39 -0.02 1.29 16 42 H 0.03 1.74 7.26 -2.39 -0.02 1.73 16 43 H 0.26 14.38 8.32 -92.71 -0.77 13.61 16 44 H 0.07 2.98 8.06 -2.39 -0.02 2.96 16 45 H 0.07 3.19 8.14 -2.39 -0.02 3.17 16 46 H 0.09 3.23 8.14 -2.39 -0.02 3.21 16 47 H 0.09 3.04 8.14 -2.39 -0.02 3.02 16 48 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 49 H 0.09 1.64 5.56 -2.39 -0.01 1.63 16 50 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 51 H 0.12 1.38 8.08 -2.39 -0.02 1.36 16 Total: -1.00 -73.47 411.41 3.93 -69.54 By element: Atomic # 1 Polarization: 28.55 SS G_CDS: 0.37 Total: 28.92 kcal Atomic # 6 Polarization: 5.09 SS G_CDS: 6.54 Total: 11.63 kcal Atomic # 7 Polarization: -97.30 SS G_CDS: -4.78 Total: -102.08 kcal Atomic # 8 Polarization: -52.59 SS G_CDS: -0.23 Total: -52.82 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.80 kcal Total: -73.47 3.93 -69.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884313830.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.072 kcal (2) G-P(sol) polarization free energy of solvation -73.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds